Clone Sequence Records
BS12801.complete Sequence
1670 bp assembled on 2009-12-07
GenBank Submission: KX802076
> BS12801.complete
GAAGTTATCAGTCGACATGACAATGTCCTCGACGTCGACAGCGACTGCGA
CGTCGACAGCGACTGCGACGCTGGACGAGGCGAACGCCACTGTTGGCGAA
ATGTTTTCGGATGCGGATATGGCGGAAGTGCGGCATGTTGTCCAACGCAT
TTTGGTGCCGTGCGTTTTTGTTATTGGACTATTGGGAAATTCAGTGAGCA
TTTATGTTTTGACGCGAAAGCGCATGAGATGCACGACGAACATATATCTA
ACGGCACTGGCCATTACGGATATTGCCTACCTGACGTGCCAGTTAATCCT
GTCACTCCAGCACTATGACTATCCCAAGTATCATTTCAAGCTCTACTGGC
AGCTCTATGGCTATTTTGTCTGGCTGTGCGACAGTTTCGGTTACATCTCA
ATTTACATAGCCGTGTGCTTCACCATCGAGAGATTCATTGCGATACGCTA
TCCGCTCAAGAGGCAAACATTCTGCACGGAATCGCTGGCCAAAAAGGTGA
TAGCAGCGGTGGCCATCTTCTGTTTGCTGTCCACACTATCGACGGCATTC
GAGCATACAATTACGATTGGTACTAGGCAGATTGATGACGCCTACCAGCC
GTGCAACCAAACGGTGGCCAACATCTCGCCCATGCCGCCGCCACCCGTGG
CAGTCACGCCCCCACTGGCCACGCCCCCGCTGCCCACGCCGGCGACCATT
TGGCAATCGCCGGACTCCGCCATGGAGTCCACGACGTCCGGCAGCTCTAA
TCAGCTCGTCGACTGGGGCAGTGGCAGTGGTGATGGAGAGCCAGAGAACA
TTCCACGACATCGCCGTCACTGGCAGTCATCTGGATTTGTGACGCTGCCC
ACACTGAGAAAAACGCTGGAGGAGCAGGATCAGAAGGTGGCAGACGCGGC
CCAGAGGTCAGGGGTCACAGAGAGTTTGCTGCAATTGTGGCGTCGCAAGC
GCAGCGCTGAGAATCACAACATCAACAATACGGATGCATTCGCATTTAAC
GTAACGGAATACTGTCAAAATGTGACCTATTACAATCATGGTCTTTCGGA
ACTGGGCTATGATGAGCTATACAGCTATCTGTGGAACCTGTTCACCCTGC
TGGTCTTCGTGGTATTCCCCCTACTTCTATTGGCCACCTTCAACTCCATT
CTCATTCTATTGGTTCATCGGTCCAAGAATCTGCGTGGTGACCTGACCAA
TGCCAGCAGCATAAGGCGCACAAAACGCAAATCAAATTCTGGACTAAAAG
GCAGCGTATCGCAGGAAAATCGCGTGACGATCACACTTATTGCGGTGGTG
TTAATGTTCATAGTTTGCCAATTGCCTTGGGCGATCTATTTGATAGTCAA
TCAGTATATGGAAATTCAAATTGGCACTCAGGTGGTGGCGGGAAATGTGT
GTAACCTATTGGCCTCCCTACATGCGGCATCCAATTTTTTTCTATACTGT
GTACTTTCCGATAAGTACCGAAAGACGGTTCGAGAACTGATAACGGGATA
TCGCTATAGACGTCGACATGCGCGTAACAATACGAGTCTCTATGTGCCGC
ATACAACGACTACACTGACCCAAATAAATGGCGATCATTATGGTAGTAAT
TATGGCGGAGCCGGAAGTCGTCGAAATCGTAATACGGGTCGCCTGATAGC
GTGAAAGCTTTCTAGACCAT
BS12801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-R-RE | 1638 | CG6986-PE | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Proc-R-RD | 1638 | CG6986-PD | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Proc-R-RC | 1638 | CG6986-PC | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-R-RE | 2784 | CG6986-RE | 453..2092 | 16..1655 | 8200 | 100 | Plus |
Proc-R-RD | 3005 | CG6986-RD | 674..2313 | 16..1655 | 8200 | 100 | Plus |
Proc-R-RC | 2672 | CG6986-RC | 341..1980 | 16..1655 | 8200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4727623..4728052 | 1226..1655 | 2150 | 100 | Plus |
X | 23542271 | X | 4726424..4726714 | 504..794 | 1455 | 100 | Plus |
X | 23542271 | X | 4726873..4727105 | 793..1025 | 1165 | 100 | Plus |
X | 23542271 | X | 4727359..4727562 | 1022..1225 | 1020 | 100 | Plus |
X | 23542271 | X | 4723367..4723567 | 16..216 | 1005 | 100 | Plus |
X | 23542271 | X | 4725021..4725196 | 216..391 | 880 | 100 | Plus |
X | 23542271 | X | 4726235..4726352 | 389..506 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:50:52 has no hits.
BS12801.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:08 Download gff for
BS12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-RC | 340..1976 | 17..1653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:25 Download gff for
BS12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RB | 631..2267 | 17..1653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:50 Download gff for
BS12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-RC | 340..1976 | 17..1653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:10 Download gff for
BS12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RC | 342..1978 | 17..1653 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:10 Download gff for
BS12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4725022..4725194 | 217..389 | 100 | -> | Plus |
X | 4723368..4723567 | 17..216 | 100 | -> | Plus |
X | 4726236..4726352 | 390..506 | 100 | -> | Plus |
X | 4726427..4726714 | 507..794 | 100 | -> | Plus |
X | 4726875..4727101 | 795..1021 | 100 | -> | Plus |
X | 4727359..4727562 | 1022..1225 | 100 | -> | Plus |
X | 4727623..4728050 | 1226..1653 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:25 Download gff for
BS12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4619055..4619227 | 217..389 | 100 | -> | Plus |
arm_X | 4620269..4620385 | 390..506 | 100 | -> | Plus |
arm_X | 4617401..4617600 | 17..216 | 100 | -> | Plus |
arm_X | 4620460..4620747 | 507..794 | 100 | -> | Plus |
arm_X | 4620908..4621134 | 795..1021 | 100 | -> | Plus |
arm_X | 4621392..4621595 | 1022..1225 | 100 | -> | Plus |
arm_X | 4621656..4622083 | 1226..1653 | 100 | | Plus |
BS12801.3prime Sequence
746 bp (608 high quality bases) assembled on 2006-10-13
> BS12801.3prime
ATGGTCTAGAAAGCTTTCACGCTATCAGGCGACCCGTATTACGATTTCGA
CGACTTCCGGCTCCGCCATAATTACTACCATAATGATCGCCATTTATTTG
GGTCAGTGTAGTCGTTGTATGCGGCACATAGAGACTCGTATTGTTACGCG
CATGTCGACGTCTATAGCGATATCCCGTTATCAGTTCTCGAACCGTCTTT
CGGTACTTATCGGAAAGTACACAGTATAGAAAAAAATTGGATGCCGCATG
TAGGGAGGCCAATAGGTTACACACATTTCCCGCCACCACCTGAGTGCCAA
TTTGAATTTCCATATACTGATTGACTATCAAATAGATCGCCCAAGGCAAT
TGGCAAACTATGAACATTAACACCACCGCAATAAGTGTGATCGTCACGCG
ATTTTCCTGCGATACGCTGCCTTTTAGTCCAGAATTTGATTTGCGTTTTG
TGCGCCTTATGCTGCTGGCATTGGTCAGGTCACCACGCAGATTCTTGGAC
CGATGAACCAATAGAATGAGAATGGAGTTGAAGGTGGCCAATAGAAGTAG
GGGGAATACCACGAAGACCAGCAGGGTGAACAGGTTCCACAGATAGCTGT
ATAGCTCATCATAGCCCAGTTCCGAAAGACCATGGATTGTAATAGGTCAC
ATTTTGACAGTATTCCGTTACGTTAAATGCGAATGCATCCGTATTGTTGA
TGTTGTGATTCTCAGCGCTGCGCTTGCGACGCCCACATTGCAGCAA
BS12801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6986-PA | 1638 | CG6986-RA | 923..1638 | 733..17 | 3545 | 99.8 | Minus |
CG6986-PB | 1638 | CG6986-RB | 923..1638 | 733..17 | 3545 | 99.8 | Minus |
CG6986-PC | 1638 | CG6986-RC | 923..1638 | 733..17 | 3545 | 99.8 | Minus |
CG6986-PD | 1638 | CG6986-RD | 923..1638 | 733..17 | 3545 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-R-RE | 2784 | CG6986-RE | 1363..2092 | 746..16 | 3585 | 99.6 | Minus |
Proc-R-RD | 3005 | CG6986-RD | 1584..2313 | 746..16 | 3585 | 99.6 | Minus |
Proc-R-RC | 2672 | CG6986-RC | 1251..1980 | 746..16 | 3585 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4727623..4728052 | 445..16 | 2150 | 100 | Minus |
X | 23542271 | X | 4727359..4727562 | 650..446 | 975 | 99.5 | Minus |
X | 23542271 | X | 4727006..4727105 | 746..647 | 455 | 97 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:40:41 has no hits.
BS12801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:40 Download gff for
BS12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-PD | 912..1638 | 17..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:32 Download gff for
BS12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RB | 1542..2269 | 16..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:07 Download gff for
BS12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RC | 1253..1980 | 16..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:07 Download gff for
BS12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4727008..4727101 | 651..744 | 97 | -> | Minus |
X | 4727359..4727562 | 446..650 | 99 | -> | Minus |
X | 4727623..4728052 | 16..445 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:32 Download gff for
BS12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4621041..4621134 | 651..744 | 97 | -> | Minus |
arm_X | 4621392..4621595 | 446..650 | 99 | -> | Minus |
arm_X | 4621656..4622085 | 16..445 | 100 | | Minus |
BS12801.5prime Sequence
749 bp (662 high quality bases) assembled on 2006-10-13
> BS12801.5prime
GAAGTTATCAGTCGACATGACAATGTCCTCGACGTCGACAGCGACTGCGA
CGTCGACAGCGACTGCGACGCTGGACGAGGCGAACGCCACTGTTGGCGAA
ATGTTTTCGGATGCGGATATGGCGGAAGTGCGGCATGTTGTCCAACGCAT
TTTGGTGCCGTGCGTTTTTGTTATTGGACTATTGGGAAATTCAGTGAGCA
TTTATGTTTTGACGCGAAAGCGCATGAGATGCACGACGAACATATATCTA
ACGGCACTGGCCATTACGGATATTGCCTACCTGACGTGCCAGTTAATCCT
GTCACTCCAGCACTATGACTATCCCAAGTATCATTTCAAGCTCTACTGGC
AGCTCTATGGCTATTTTGTCTGGCTGTGCGACAGTTTCGGTTACATCTCA
ATTTACATAGCCGTGTGCTTCACCATCGAGAGATTCATTGCGATACGCTA
TCCGCTCAAGAGGCAAACATTCTGCACGGAATCGCTGGCCAAAAAGGTGA
TAGCAGCGGTGGCCATCTTCTGTTTGCTGTCCACACTATCGACGGCATTC
GAGCATACAATTACGATTGGTACTAGGCAGATTGATGACGCCTACCAGCC
GTGCAACCAAACGGTGGCCAACATCTCGCCCATGCCGCCGCCACCCGTGG
CAGTCACGCCCCCACTGGCCACGCCCCCGCTGCCCACGCCGGCGACCATT
TTGGGCATCGCCGGACTCCGCCATGGAGTCCACGACGTCCGGCAGCTCT
BS12801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6986-PA | 1638 | CG6986-RA | 1..732 | 17..749 | 3575 | 99.5 | Plus |
CG6986-PB | 1638 | CG6986-RB | 1..732 | 17..749 | 3575 | 99.5 | Plus |
CG6986-PC | 1638 | CG6986-RC | 1..732 | 17..749 | 3575 | 99.5 | Plus |
CG6986-PD | 1638 | CG6986-RD | 1..732 | 17..749 | 3575 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-R-RE | 2784 | CG6986-RE | 453..1185 | 16..749 | 3615 | 99.6 | Plus |
Proc-R-RD | 3005 | CG6986-RD | 674..1406 | 16..749 | 3615 | 99.6 | Plus |
Proc-R-RC | 2672 | CG6986-RC | 341..1073 | 16..749 | 3615 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4726424..4726668 | 504..749 | 1150 | 98.8 | Plus |
X | 23542271 | X | 4723367..4723567 | 16..216 | 1005 | 100 | Plus |
X | 23542271 | X | 4725021..4725196 | 216..391 | 880 | 100 | Plus |
X | 23542271 | X | 4726235..4726352 | 389..506 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:45:12 has no hits.
BS12801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:40 Download gff for
BS12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-PD | 1..732 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:39:02 Download gff for
BS12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RB | 626..1362 | 9..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:54 Download gff for
BS12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RC | 337..1073 | 9..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:54 Download gff for
BS12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4723363..4723567 | 9..216 | 98 | -> | Plus |
X | 4725022..4725194 | 217..389 | 100 | -> | Plus |
X | 4726236..4726352 | 390..506 | 100 | -> | Plus |
X | 4726427..4726668 | 507..749 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:39:02 Download gff for
BS12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4620269..4620385 | 390..506 | 100 | -> | Plus |
arm_X | 4617396..4617600 | 9..216 | 98 | -> | Plus |
arm_X | 4619055..4619227 | 217..389 | 100 | -> | Plus |
arm_X | 4620460..4620701 | 507..749 | 98 | | Plus |
BS12801.pep Sequence
Translation from 16 to 1653
> BS12801.pep
MTMSSTSTATATSTATATLDEANATVGEMFSDADMAEVRHVVQRILVPCV
FVIGLLGNSVSIYVLTRKRMRCTTNIYLTALAITDIAYLTCQLILSLQHY
DYPKYHFKLYWQLYGYFVWLCDSFGYISIYIAVCFTIERFIAIRYPLKRQ
TFCTESLAKKVIAAVAIFCLLSTLSTAFEHTITIGTRQIDDAYQPCNQTV
ANISPMPPPPVAVTPPLATPPLPTPATIWQSPDSAMESTTSGSSNQLVDW
GSGSGDGEPENIPRHRRHWQSSGFVTLPTLRKTLEEQDQKVADAAQRSGV
TESLLQLWRRKRSAENHNINNTDAFAFNVTEYCQNVTYYNHGLSELGYDE
LYSYLWNLFTLLVFVVFPLLLLATFNSILILLVHRSKNLRGDLTNASSIR
RTKRKSNSGLKGSVSQENRVTITLIAVVLMFIVCQLPWAIYLIVNQYMEI
QIGTQVVAGNVCNLLASLHAASNFFLYCVLSDKYRKTVRELITGYRYRRR
HARNNTSLYVPHTTTTLTQINGDHYGSNYGGAGSRRNRNTGRLIA*
BS12801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-R-PE | 545 | CG6986-PE | 1..545 | 1..545 | 2840 | 100 | Plus |
Proc-R-PD | 545 | CG6986-PD | 1..545 | 1..545 | 2840 | 100 | Plus |
Proc-R-PC | 545 | CG6986-PC | 1..545 | 1..545 | 2840 | 100 | Plus |
Proc-R-PB | 545 | CG6986-PB | 1..545 | 1..545 | 2840 | 100 | Plus |
Proc-R-PA | 545 | CG6986-PA | 1..545 | 1..545 | 2840 | 100 | Plus |