Clone BS12801 Report

Search the DGRC for BS12801

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptProc-R-RA
Protein status:BS12801.pep: full length peptide match
Sequenced Size:1670

Clone Sequence Records

BS12801.complete Sequence

1670 bp assembled on 2009-12-07

GenBank Submission: KX802076

> BS12801.complete
GAAGTTATCAGTCGACATGACAATGTCCTCGACGTCGACAGCGACTGCGA
CGTCGACAGCGACTGCGACGCTGGACGAGGCGAACGCCACTGTTGGCGAA
ATGTTTTCGGATGCGGATATGGCGGAAGTGCGGCATGTTGTCCAACGCAT
TTTGGTGCCGTGCGTTTTTGTTATTGGACTATTGGGAAATTCAGTGAGCA
TTTATGTTTTGACGCGAAAGCGCATGAGATGCACGACGAACATATATCTA
ACGGCACTGGCCATTACGGATATTGCCTACCTGACGTGCCAGTTAATCCT
GTCACTCCAGCACTATGACTATCCCAAGTATCATTTCAAGCTCTACTGGC
AGCTCTATGGCTATTTTGTCTGGCTGTGCGACAGTTTCGGTTACATCTCA
ATTTACATAGCCGTGTGCTTCACCATCGAGAGATTCATTGCGATACGCTA
TCCGCTCAAGAGGCAAACATTCTGCACGGAATCGCTGGCCAAAAAGGTGA
TAGCAGCGGTGGCCATCTTCTGTTTGCTGTCCACACTATCGACGGCATTC
GAGCATACAATTACGATTGGTACTAGGCAGATTGATGACGCCTACCAGCC
GTGCAACCAAACGGTGGCCAACATCTCGCCCATGCCGCCGCCACCCGTGG
CAGTCACGCCCCCACTGGCCACGCCCCCGCTGCCCACGCCGGCGACCATT
TGGCAATCGCCGGACTCCGCCATGGAGTCCACGACGTCCGGCAGCTCTAA
TCAGCTCGTCGACTGGGGCAGTGGCAGTGGTGATGGAGAGCCAGAGAACA
TTCCACGACATCGCCGTCACTGGCAGTCATCTGGATTTGTGACGCTGCCC
ACACTGAGAAAAACGCTGGAGGAGCAGGATCAGAAGGTGGCAGACGCGGC
CCAGAGGTCAGGGGTCACAGAGAGTTTGCTGCAATTGTGGCGTCGCAAGC
GCAGCGCTGAGAATCACAACATCAACAATACGGATGCATTCGCATTTAAC
GTAACGGAATACTGTCAAAATGTGACCTATTACAATCATGGTCTTTCGGA
ACTGGGCTATGATGAGCTATACAGCTATCTGTGGAACCTGTTCACCCTGC
TGGTCTTCGTGGTATTCCCCCTACTTCTATTGGCCACCTTCAACTCCATT
CTCATTCTATTGGTTCATCGGTCCAAGAATCTGCGTGGTGACCTGACCAA
TGCCAGCAGCATAAGGCGCACAAAACGCAAATCAAATTCTGGACTAAAAG
GCAGCGTATCGCAGGAAAATCGCGTGACGATCACACTTATTGCGGTGGTG
TTAATGTTCATAGTTTGCCAATTGCCTTGGGCGATCTATTTGATAGTCAA
TCAGTATATGGAAATTCAAATTGGCACTCAGGTGGTGGCGGGAAATGTGT
GTAACCTATTGGCCTCCCTACATGCGGCATCCAATTTTTTTCTATACTGT
GTACTTTCCGATAAGTACCGAAAGACGGTTCGAGAACTGATAACGGGATA
TCGCTATAGACGTCGACATGCGCGTAACAATACGAGTCTCTATGTGCCGC
ATACAACGACTACACTGACCCAAATAAATGGCGATCATTATGGTAGTAAT
TATGGCGGAGCCGGAAGTCGTCGAAATCGTAATACGGGTCGCCTGATAGC
GTGAAAGCTTTCTAGACCAT

BS12801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-R-RE 1638 CG6986-PE 1..1638 17..1654 8190 100 Plus
Proc-R-RD 1638 CG6986-PD 1..1638 17..1654 8190 100 Plus
Proc-R-RC 1638 CG6986-PC 1..1638 17..1654 8190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-R-RE 2784 CG6986-RE 453..2092 16..1655 8200 100 Plus
Proc-R-RD 3005 CG6986-RD 674..2313 16..1655 8200 100 Plus
Proc-R-RC 2672 CG6986-RC 341..1980 16..1655 8200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4727623..4728052 1226..1655 2150 100 Plus
X 23542271 X 4726424..4726714 504..794 1455 100 Plus
X 23542271 X 4726873..4727105 793..1025 1165 100 Plus
X 23542271 X 4727359..4727562 1022..1225 1020 100 Plus
X 23542271 X 4723367..4723567 16..216 1005 100 Plus
X 23542271 X 4725021..4725196 216..391 880 100 Plus
X 23542271 X 4726235..4726352 389..506 590 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:50:52 has no hits.

BS12801.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:08 Download gff for BS12801.complete
Subject Subject Range Query Range Percent Splice Strand
CG6986-RC 340..1976 17..1653 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:25 Download gff for BS12801.complete
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RB 631..2267 17..1653 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:50 Download gff for BS12801.complete
Subject Subject Range Query Range Percent Splice Strand
CG6986-RC 340..1976 17..1653 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:10 Download gff for BS12801.complete
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RC 342..1978 17..1653 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:10 Download gff for BS12801.complete
Subject Subject Range Query Range Percent Splice Strand
X 4725022..4725194 217..389 100 -> Plus
X 4723368..4723567 17..216 100 -> Plus
X 4726236..4726352 390..506 100 -> Plus
X 4726427..4726714 507..794 100 -> Plus
X 4726875..4727101 795..1021 100 -> Plus
X 4727359..4727562 1022..1225 100 -> Plus
X 4727623..4728050 1226..1653 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:25 Download gff for BS12801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4619055..4619227 217..389 100 -> Plus
arm_X 4620269..4620385 390..506 100 -> Plus
arm_X 4617401..4617600 17..216 100 -> Plus
arm_X 4620460..4620747 507..794 100 -> Plus
arm_X 4620908..4621134 795..1021 100 -> Plus
arm_X 4621392..4621595 1022..1225 100 -> Plus
arm_X 4621656..4622083 1226..1653 100   Plus

BS12801.3prime Sequence

746 bp (608 high quality bases) assembled on 2006-10-13

> BS12801.3prime
ATGGTCTAGAAAGCTTTCACGCTATCAGGCGACCCGTATTACGATTTCGA
CGACTTCCGGCTCCGCCATAATTACTACCATAATGATCGCCATTTATTTG
GGTCAGTGTAGTCGTTGTATGCGGCACATAGAGACTCGTATTGTTACGCG
CATGTCGACGTCTATAGCGATATCCCGTTATCAGTTCTCGAACCGTCTTT
CGGTACTTATCGGAAAGTACACAGTATAGAAAAAAATTGGATGCCGCATG
TAGGGAGGCCAATAGGTTACACACATTTCCCGCCACCACCTGAGTGCCAA
TTTGAATTTCCATATACTGATTGACTATCAAATAGATCGCCCAAGGCAAT
TGGCAAACTATGAACATTAACACCACCGCAATAAGTGTGATCGTCACGCG
ATTTTCCTGCGATACGCTGCCTTTTAGTCCAGAATTTGATTTGCGTTTTG
TGCGCCTTATGCTGCTGGCATTGGTCAGGTCACCACGCAGATTCTTGGAC
CGATGAACCAATAGAATGAGAATGGAGTTGAAGGTGGCCAATAGAAGTAG
GGGGAATACCACGAAGACCAGCAGGGTGAACAGGTTCCACAGATAGCTGT
ATAGCTCATCATAGCCCAGTTCCGAAAGACCATGGATTGTAATAGGTCAC
ATTTTGACAGTATTCCGTTACGTTAAATGCGAATGCATCCGTATTGTTGA
TGTTGTGATTCTCAGCGCTGCGCTTGCGACGCCCACATTGCAGCAA

BS12801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6986-PA 1638 CG6986-RA 923..1638 733..17 3545 99.8 Minus
CG6986-PB 1638 CG6986-RB 923..1638 733..17 3545 99.8 Minus
CG6986-PC 1638 CG6986-RC 923..1638 733..17 3545 99.8 Minus
CG6986-PD 1638 CG6986-RD 923..1638 733..17 3545 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-R-RE 2784 CG6986-RE 1363..2092 746..16 3585 99.6 Minus
Proc-R-RD 3005 CG6986-RD 1584..2313 746..16 3585 99.6 Minus
Proc-R-RC 2672 CG6986-RC 1251..1980 746..16 3585 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4727623..4728052 445..16 2150 100 Minus
X 23542271 X 4727359..4727562 650..446 975 99.5 Minus
X 23542271 X 4727006..4727105 746..647 455 97 Minus
Blast to na_te.dros performed on 2015-02-10 22:40:41 has no hits.

BS12801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:40 Download gff for BS12801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6986-PD 912..1638 17..744 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:32 Download gff for BS12801.3prime
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RB 1542..2269 16..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:07 Download gff for BS12801.3prime
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RC 1253..1980 16..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:07 Download gff for BS12801.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4727008..4727101 651..744 97 -> Minus
X 4727359..4727562 446..650 99 -> Minus
X 4727623..4728052 16..445 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:32 Download gff for BS12801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4621041..4621134 651..744 97 -> Minus
arm_X 4621392..4621595 446..650 99 -> Minus
arm_X 4621656..4622085 16..445 100   Minus

BS12801.5prime Sequence

749 bp (662 high quality bases) assembled on 2006-10-13

> BS12801.5prime
GAAGTTATCAGTCGACATGACAATGTCCTCGACGTCGACAGCGACTGCGA
CGTCGACAGCGACTGCGACGCTGGACGAGGCGAACGCCACTGTTGGCGAA
ATGTTTTCGGATGCGGATATGGCGGAAGTGCGGCATGTTGTCCAACGCAT
TTTGGTGCCGTGCGTTTTTGTTATTGGACTATTGGGAAATTCAGTGAGCA
TTTATGTTTTGACGCGAAAGCGCATGAGATGCACGACGAACATATATCTA
ACGGCACTGGCCATTACGGATATTGCCTACCTGACGTGCCAGTTAATCCT
GTCACTCCAGCACTATGACTATCCCAAGTATCATTTCAAGCTCTACTGGC
AGCTCTATGGCTATTTTGTCTGGCTGTGCGACAGTTTCGGTTACATCTCA
ATTTACATAGCCGTGTGCTTCACCATCGAGAGATTCATTGCGATACGCTA
TCCGCTCAAGAGGCAAACATTCTGCACGGAATCGCTGGCCAAAAAGGTGA
TAGCAGCGGTGGCCATCTTCTGTTTGCTGTCCACACTATCGACGGCATTC
GAGCATACAATTACGATTGGTACTAGGCAGATTGATGACGCCTACCAGCC
GTGCAACCAAACGGTGGCCAACATCTCGCCCATGCCGCCGCCACCCGTGG
CAGTCACGCCCCCACTGGCCACGCCCCCGCTGCCCACGCCGGCGACCATT
TTGGGCATCGCCGGACTCCGCCATGGAGTCCACGACGTCCGGCAGCTCT

BS12801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6986-PA 1638 CG6986-RA 1..732 17..749 3575 99.5 Plus
CG6986-PB 1638 CG6986-RB 1..732 17..749 3575 99.5 Plus
CG6986-PC 1638 CG6986-RC 1..732 17..749 3575 99.5 Plus
CG6986-PD 1638 CG6986-RD 1..732 17..749 3575 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-R-RE 2784 CG6986-RE 453..1185 16..749 3615 99.6 Plus
Proc-R-RD 3005 CG6986-RD 674..1406 16..749 3615 99.6 Plus
Proc-R-RC 2672 CG6986-RC 341..1073 16..749 3615 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4726424..4726668 504..749 1150 98.8 Plus
X 23542271 X 4723367..4723567 16..216 1005 100 Plus
X 23542271 X 4725021..4725196 216..391 880 100 Plus
X 23542271 X 4726235..4726352 389..506 590 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:45:12 has no hits.

BS12801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:40 Download gff for BS12801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6986-PD 1..732 17..749 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:39:02 Download gff for BS12801.5prime
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RB 626..1362 9..749 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:54 Download gff for BS12801.5prime
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RC 337..1073 9..749 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:54 Download gff for BS12801.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4723363..4723567 9..216 98 -> Plus
X 4725022..4725194 217..389 100 -> Plus
X 4726236..4726352 390..506 100 -> Plus
X 4726427..4726668 507..749 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:39:02 Download gff for BS12801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4620269..4620385 390..506 100 -> Plus
arm_X 4617396..4617600 9..216 98 -> Plus
arm_X 4619055..4619227 217..389 100 -> Plus
arm_X 4620460..4620701 507..749 98   Plus

BS12801.pep Sequence

Translation from 16 to 1653

> BS12801.pep
MTMSSTSTATATSTATATLDEANATVGEMFSDADMAEVRHVVQRILVPCV
FVIGLLGNSVSIYVLTRKRMRCTTNIYLTALAITDIAYLTCQLILSLQHY
DYPKYHFKLYWQLYGYFVWLCDSFGYISIYIAVCFTIERFIAIRYPLKRQ
TFCTESLAKKVIAAVAIFCLLSTLSTAFEHTITIGTRQIDDAYQPCNQTV
ANISPMPPPPVAVTPPLATPPLPTPATIWQSPDSAMESTTSGSSNQLVDW
GSGSGDGEPENIPRHRRHWQSSGFVTLPTLRKTLEEQDQKVADAAQRSGV
TESLLQLWRRKRSAENHNINNTDAFAFNVTEYCQNVTYYNHGLSELGYDE
LYSYLWNLFTLLVFVVFPLLLLATFNSILILLVHRSKNLRGDLTNASSIR
RTKRKSNSGLKGSVSQENRVTITLIAVVLMFIVCQLPWAIYLIVNQYMEI
QIGTQVVAGNVCNLLASLHAASNFFLYCVLSDKYRKTVRELITGYRYRRR
HARNNTSLYVPHTTTTLTQINGDHYGSNYGGAGSRRNRNTGRLIA*

BS12801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-R-PE 545 CG6986-PE 1..545 1..545 2840 100 Plus
Proc-R-PD 545 CG6986-PD 1..545 1..545 2840 100 Plus
Proc-R-PC 545 CG6986-PC 1..545 1..545 2840 100 Plus
Proc-R-PB 545 CG6986-PB 1..545 1..545 2840 100 Plus
Proc-R-PA 545 CG6986-PA 1..545 1..545 2840 100 Plus