Clone Sequence Records
BS12806.complete Sequence
1850 bp assembled on 2009-12-07
GenBank Submission: KX800815
> BS12806.complete
GAAGTTATCAGTCGACATGTACGAACCGGGTACGAGCAGCGAGGAGGGTG
TTGTATCTGAGACTGAGCCCGAGCCAGCAGGAGTATCTGTATCTGTATCT
GTATCTGTATCTGAGGAGCCATCGGCGAGCCGCTCCAGCCGGCTGACCGT
CATTACCGTGGTCGTGGTCGTCGTCGCCGTTCGCGCCATGAGTCGTCTGA
GGCGTGAAAGCAGCCGACAAAGCGTCATCACCGTCGAGCTGATACAGTTC
ATCATTCAGTATCGCGCCAAGGAGACGCAGGAGAAGAAGAAAAGGCGCCT
GGCCGACGAGGACGATGAGCTGTCGGAGGTGCAGCCGGATGCAGTGCCGC
CGGAGGTGCGCGAGTGGCTGGCCTCCACCTTCACCCGCCAGATGGCCACC
AGCCGGCGCAAGAGCGACGAGAAGCCCAAGTTCCGTTCGGTGGCCCACGC
CATCCGTGCTGGCATCTTTGTGGACCGCATGTATCGCCGCGTCTCCAGCT
CGGCCCTAACGGCCTTCCCACCGGACGTGGTCAGGCTGCTCAAGAACCTG
GACGACTGGACCTTCGATGTGTTCGCCCTGACGGAGGCAGCCAGCGGCCA
GGTGGTCAAGTACGTGGCCTATGAGCTCTTCAACCGCTACGGCTCGATTC
ACAAGTTCAAGATTGCGCCGGGAATTCTGGAGGCGTTCCTGCATCGCGTG
GAGGAGGGCTACTGCCGGTATCGGAATCCGTATCATAACAATCTGCACGC
CGTGGACGTGATGCAGACGATCCACTACTGCCTGTGCAACACGGGTCTGA
TGAACTGGCTGACGGACCTGGAGATCTTTGCCTCGCTGCTGGCCGCCCTG
CTCCACGATTACGAGCACACCGGCACCACCAATAACTTCCATGTGATGTC
CGGTTCGGAGACGGCACTGCTGTACAACGATCGGGCTGTGCTGGAGAATC
ATCATGCCAGCGCCAGTTTCCGGCTGCTGCGCGAGGATGAGTACAACATA
CTGTCGCATTTGTCGCGCGAGGAGTTCCGCGAATTGCGCGGCCTGGTTAT
CGAAATGGTACTCGGCACCGATATGACCAATCACTTTCAGCAGATGAAGG
CCATGCGACAGCTGCTGACGCTCCAGGAGGCGACCATTGACAAGCAGAAG
GTGCTGTCCCTGGTTCTCCACTGCTGCGACATCTCGCATCCGGCCAAGCA
GTGGGGCGTCCATCATCGCTGGACGATGCTACTGCTGGAGGAGTTCTTCC
GCCAGGGTGACCTCGAGAAGGAGCTGGGTTTGCCCTTCAGTCCGCTGTGT
GATCGCAACAATACGCTGGTGGCCGAGTCTCAGATCTGTTTCATCGATTT
CATCGTGGAGCCCAGCATGGGCGTCATGTCCGACATGCTGGAGCTCATAC
TGGCGCCAATTGCGCCGATGAACAAGTCCAAGCCCGCCACTCTGGTGGAG
CACGAGACGACCGCTAACTCCACGACAAACTCGGCGATCGTCATACCCAA
TTCGGGAATCACGCCCAGCATGGACAAGCCACGGGATCATCGCACCGAGG
CCAAGACCACCGCCGCCGAGTGCCTCGCACGCAAGAGTGTCACCGGCACC
ACCGCCTCCAAGTTCAACATACCCAAGCCGTGGCTCACCTGTCTGGTGGA
GAACAAGCGGATATGGAAGGAGCAGGCCGTCAAAGATGCCGAGGCTCGGG
CTTTGGCCACCGCAGCGGAGGAAGCTGCAGCTGCAGCGGCGGCGGAAGCG
GAGGAAAGCAAGCCGGAAACGGAAACGGCCGATGGCGAGCAGAGTGAGCC
AGCTGCGGAGCCGGCAGATGGCGCTGCGGCCTAAAAGCTTTCTAGACCAT
BS12806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde1c-RC | 1818 | CG44007-PC | 1..1818 | 17..1834 | 9075 | 99.9 | Plus |
| Pde1c-RL | 2568 | CG44007-PL | 1020..2568 | 286..1834 | 7700 | 99.8 | Plus |
| Pde1c-RJ | 3477 | CG44007-PJ | 1929..3477 | 286..1834 | 7700 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde1c-RC | 4561 | CG44007-RC | 341..2159 | 16..1834 | 9080 | 99.9 | Plus |
| Pde1c-RL | 4894 | CG44007-RL | 1718..3266 | 286..1834 | 7700 | 99.8 | Plus |
| Pde1c-RJ | 5321 | CG44007-RJ | 2145..3693 | 286..1834 | 7700 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11817353..11818495 | 1685..543 | 5700 | 99.9 | Minus |
| 2L | 23513712 | 2L | 11821006..11821285 | 295..16 | 1400 | 100 | Minus |
| 2L | 23513712 | 2L | 11818600..11818851 | 544..293 | 1260 | 100 | Minus |
| 2L | 23513712 | 2L | 11816558..11816708 | 1834..1684 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:13:40 has no hits.
BS12806.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:09 Download gff for
BS12806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 342..2157 | 17..1832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:07 Download gff for
BS12806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 342..2157 | 17..1832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:39 Download gff for
BS12806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 342..2157 | 17..1832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:48 Download gff for
BS12806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 342..2157 | 17..1832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:48 Download gff for
BS12806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11821007..11821284 | 17..294 | 100 | | Minus |
| 2L | 11818600..11818849 | 295..544 | 100 | <- | Minus |
| 2L | 11816560..11816706 | 1686..1832 | 100 | <- | Minus |
| 2L | 11817353..11818493 | 545..1685 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:07 Download gff for
BS12806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11818600..11818849 | 295..544 | 100 | <- | Minus |
| arm_2L | 11821007..11821284 | 17..294 | 100 | | Minus |
| arm_2L | 11816560..11816706 | 1686..1832 | 100 | <- | Minus |
| arm_2L | 11817353..11818493 | 545..1685 | 99 | <- | Minus |
BS12806.3prime Sequence
855 bp (766 high quality bases) assembled on 2006-10-13
> BS12806.3prime
ATGGTCTAGAAAGCTTTTAGGCCGCAGCGCCATCTGCCGGCTCCGCAGCT
GGCTCACTCTGCTCGCCATCGGCCGTTTCCGTTTCCGGCTTGCTTTCCTC
CGCTTCCGCCGCCGCTGCAGCTGCAGCTTCCTCCGCTGCGGTGGCCAAAG
CCCGAGCCTCGGCATCTTTGACGGCCTGCTCCTTCCATATCCGCTTGTTC
TCCACCAGACAGGTGAGCCACGGCTTGGGTATGTTGAACTTGGAGGCGGT
GGTGCCGGTGACACTCTTGCGTGCGAGGCACTCGGCGGCGGTGGTCTTGG
CCTCGGTGCGATGATCCCGTGGCTTGTCCATGCTGGGCGTGATTCCCGAA
TTGGGTATGACGATCGCCGAGTTTGTCGTGGAGTTAGCGGTCGTCTCGTG
CTCCACCAGAGTGGCGGGCTTGGACTTGTTCATCGGCGCAATTGGCGCCA
GTATGAGCTCCAGCATGTCGGACATGACGCCCATGCTGGGCTCCACGATG
AAATCGATGAAACAGATCTGAGACTCGGCCACCAGCGTATTGTTGCGATC
ACACAGCGGACTGAAGGGCAAACCCAGCTCCTTCTCGAGGTCACCCTGGC
GGAAGAACTCCTCCAGCAGTAGCATCGTCCAGCGATGATGGACGCCCCAC
TGCTTGGCCGGATGCGAGATGTCGCAGCAGTGGAGAACCAGGGACAGCAC
CTTCTGCTTGTCAATGGTCGCCTCCTGGAGCGTCAGCAGCTGTCGCATGG
CCTTCATCTGCTGAAAGTGATTGGTCATATCGGTGCCGAGTACCATTTCG
ATAACCAGGCCGCGCAATTCGCGGAACTCCTCGCGCGACAAATGCGACAG
TATGT
BS12806.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14940-PA | 1818 | Pde1c-RA | 980..1818 | 855..17 | 4170 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde1c-RL | 4894 | CG44007-RL | 2428..3266 | 855..17 | 4180 | 99.9 | Minus |
| Pde1c-RK | 5071 | CG44007-RK | 2605..3443 | 855..17 | 4180 | 99.9 | Minus |
| Pde1c-RJ | 5321 | CG44007-RJ | 2855..3693 | 855..17 | 4180 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11817353..11818042 | 166..855 | 3435 | 99.9 | Plus |
| 2L | 23513712 | 2L | 11816558..11816708 | 17..167 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:40:50 has no hits.
BS12806.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:43 Download gff for
BS12806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14940-PA | 980..1818 | 17..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:34 Download gff for
BS12806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RG | 2464..3302 | 17..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:39 Download gff for
BS12806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RJ | 2855..3693 | 17..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:39 Download gff for
BS12806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11816558..11816706 | 17..165 | 100 | <- | Plus |
| 2L | 11817353..11818042 | 166..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:34 Download gff for
BS12806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11816558..11816706 | 17..165 | 100 | <- | Plus |
| arm_2L | 11817353..11818042 | 166..855 | 99 | | Plus |
BS12806.5prime Sequence
763 bp (687 high quality bases) assembled on 2006-10-13
> BS12806.5prime
GAAGTTATCAGTCGACATGTACGAACCGGGTACGAGCAGCGAGGAGGGTG
TTGTATCTGAGACTGAGCCCGAGCCAGCAGGAGTATCTGTATCTGTATCT
GTATCTGTATCTGAGGAGCCATCGGCGAGCCGCTCCAGCCGGCTGACCGT
CATTACCGTGGTCGTGGTCGTCGTCGCCGTTCGCGCCATGAGTCGTCTGA
GGCGTGAAAGCAGCCGACAAAGCGTCATCACCGTCGAGCTGATACAGTTC
ATCATTCAGTATCGCGCCAAGGAGACGCAGGAGAAGAAGAAAAGGCGCCT
GGCCGACGAGGACGATGAGCTGTCGGAGGTGCAGCCGGATGCAGTGCCGC
CGGAGGTGCGCGAGTGGCTGGCCTCCACCTTCACCCGCCAGATGGCCACC
AGCCGGCGCAAGAGCGACGAGAAGCCCAAGTTCCGTTCGGTGGCCCACGC
CATCCGTGCTGGCATCTTTGTGGACCGCATGTATCGCCGCGTCTCCAGCT
CGGCCCTAACGGCCTTCCCACCGGACGTGGTCAGGCTGCTCAAGAACCTG
GACGACTGGACCTTCGATGTGTTCGCCCTGACGGAGGCAGCCAGCGGCCA
GGTGGTCAAGTACGTGGCCTATGAGCTCTTCAACCGCTACGGCTCGATTC
ACAAGTTCAAGATTGCGCCGGGAATTCTGGAGGCGTTCCTGCATCGCGTG
GAGGAGGGCTACTGCCGGTATCGGAATCCGTATCATAACCATCTGCACGC
CGTGGACGTGATG
BS12806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14940-PA | 1818 | Pde1c-RA | 1..747 | 17..763 | 3710 | 99.8 | Plus |
| CG32223-PA | 1950 | CG32223-RA | 1845..1871 | 109..83 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde1c-RC | 4561 | CG44007-RC | 341..1088 | 16..763 | 3725 | 99.9 | Plus |
| Pde1c-RL | 4894 | CG44007-RL | 1718..2195 | 286..763 | 2345 | 99.4 | Plus |
| Pde1c-RJ | 5321 | CG44007-RJ | 2145..2622 | 286..763 | 2345 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11821006..11821285 | 295..16 | 1400 | 100 | Minus |
| 2L | 23513712 | 2L | 11818600..11818851 | 544..293 | 1260 | 100 | Minus |
| 2L | 23513712 | 2L | 11818275..11818495 | 763..543 | 1090 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:44:18 has no hits.
BS12806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:43 Download gff for
BS12806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14940-PA | 1..747 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:33:11 Download gff for
BS12806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 339..1088 | 12..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:20 Download gff for
BS12806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 339..1088 | 12..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:20 Download gff for
BS12806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11818275..11818493 | 545..763 | 99 | <- | Minus |
| 2L | 11818600..11818849 | 295..544 | 100 | <- | Minus |
| 2L | 11821007..11821287 | 12..294 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:33:11 Download gff for
BS12806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11818275..11818493 | 545..763 | 99 | <- | Minus |
| arm_2L | 11818600..11818849 | 295..544 | 100 | <- | Minus |
| arm_2L | 11821007..11821287 | 12..294 | 99 | | Minus |
BS12806.pep Sequence
Translation from 16 to 1833
> BS12806.pep
MYEPGTSSEEGVVSETEPEPAGVSVSVSVSVSEEPSASRSSRLTVITVVV
VVVAVRAMSRLRRESSRQSVITVELIQFIIQYRAKETQEKKKRRLADEDD
ELSEVQPDAVPPEVREWLASTFTRQMATSRRKSDEKPKFRSVAHAIRAGI
FVDRMYRRVSSSALTAFPPDVVRLLKNLDDWTFDVFALTEAASGQVVKYV
AYELFNRYGSIHKFKIAPGILEAFLHRVEEGYCRYRNPYHNNLHAVDVMQ
TIHYCLCNTGLMNWLTDLEIFASLLAALLHDYEHTGTTNNFHVMSGSETA
LLYNDRAVLENHHASASFRLLREDEYNILSHLSREEFRELRGLVIEMVLG
TDMTNHFQQMKAMRQLLTLQEATIDKQKVLSLVLHCCDISHPAKQWGVHH
RWTMLLLEEFFRQGDLEKELGLPFSPLCDRNNTLVAESQICFIDFIVEPS
MGVMSDMLELILAPIAPMNKSKPATLVEHETTANSTTNSAIVIPNSGITP
SMDKPRDHRTEAKTTAAECLARKSVTGTTASKFNIPKPWLTCLVENKRIW
KEQAVKDAEARALATAAEEAAAAAAAEAEESKPETETADGEQSEPAAEPA
DGAAA*
BS12806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde1c-PC | 605 | CG44007-PC | 1..605 | 1..605 | 3090 | 100 | Plus |
| Pde1c-PH | 952 | CG44007-PH | 400..952 | 54..605 | 2666 | 94.2 | Plus |
| Pde1c-PL | 855 | CG44007-PL | 342..855 | 92..605 | 2659 | 99.8 | Plus |
| Pde1c-PJ | 1158 | CG44007-PJ | 645..1158 | 92..605 | 2659 | 99.8 | Plus |
| Pde1c-PG | 834 | CG44007-PG | 321..834 | 92..605 | 2659 | 99.8 | Plus |
