Clone Sequence Records
BS12807.3prime Sequence
763 bp (695 high quality bases) assembled on 2006-10-13
> BS12807.3prime
ATGGTCTAGAAAGCTTTCATCTTTTATATGTGGTACACTCGTTCCCCTTG
TTTCCAATCGTCCAACTGTGATCAAGGATGTCTTCGCTTGTGAAACGAAC
GTCTGGATCCGCCTGAAGCATATTGGCAATAAGATCGCGCACTCCGTCCC
CTATATCAGACCAGTAAGGATCTGGAAACTCATAAATGCCAGAGATAATA
GCGTCGAATAGCGGCTCCTGTTGGTTGTCAGGCGCTACAAACGGCGGAAA
ACCGCATAGAAGTATATACAAAATGATTCCAGCGGCCCAAACGTCAATCT
TTAGCCCATATCCGACTTCTAACAATATCTCTGGTGCTACATATGTGGGA
GTCCCGCAGACAGCATATAGAAGATCGTTTACCTCACATGCTAATCCAAA
ATCAGCAAGCTTTAGTTCAAGAACGTTTCCATGCTCATCCAATTTCACTA
GAAGATTCTCAGGTTTTATATCTCGATGCACAATGCCCATTGAATGCAGA
TAAGTCATGGCCGCACCCAAATGTCTAATCATAATGCGCGACTGGTTTTC
TGAGAACCTCGTTACCTGAGTTATAGCGTCGAATAAATCACCACCACTTA
CATATTCCAGTACAAGATACATATTTGTATTTTGGTCTACACTCAAAATA
AGCGAAATTATATGCGGATGATTTAATTTTTTCATGACGCCAACTTCCGC
GTCTATGTAGTGTTCCTTGCCCTTGCATTTGTTCTTGTCTATTATTTTTA
GGGCGTAAGAATG
BS12807.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17528-PD | 2247 | CG17528-RD | 1501..2247 | 763..17 | 3685 | 99.7 | Minus |
| CG17528-PC | 2247 | CG17528-RC | 1501..2247 | 763..17 | 3685 | 99.7 | Minus |
| CG17528-PB | 1266 | CG17528-RB | 520..1266 | 763..17 | 3685 | 99.7 | Minus |
| CG17528-PA | 1266 | CG17528-RA | 520..1266 | 763..17 | 3685 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17528-RD | 4686 | CG17528-RD | 1917..2663 | 763..17 | 3705 | 99.7 | Minus |
| CG17528-RC | 2645 | CG17528-RC | 1711..2457 | 763..17 | 3705 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4817449..4817735 | 17..303 | 1435 | 100 | Plus |
| 2R | 25286936 | 2R | 4818207..4818377 | 593..763 | 825 | 98.8 | Plus |
| 2R | 25286936 | 2R | 4817996..4818155 | 447..606 | 755 | 98.1 | Plus |
| 2R | 25286936 | 2R | 4817785..4817934 | 299..448 | 750 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7531..7576 | 239..194 | 113 | 71.7 | Minus |
BS12807.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:44 Download gff for
BS12807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-PA | 520..1266 | 17..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:06:22 Download gff for
BS12807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 1711..2457 | 17..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:39 Download gff for
BS12807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 1711..2457 | 17..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:39 Download gff for
BS12807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4817449..4817730 | 17..298 | 100 | <- | Plus |
| 2R | 4817785..4817934 | 299..448 | 100 | <- | Plus |
| 2R | 4817998..4818143 | 449..594 | 100 | <- | Plus |
| 2R | 4818209..4818377 | 595..763 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:06:22 Download gff for
BS12807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 705290..705439 | 299..448 | 100 | <- | Plus |
| arm_2R | 705503..705648 | 449..594 | 100 | <- | Plus |
| arm_2R | 705714..705882 | 595..763 | 98 | | Plus |
| arm_2R | 704954..705235 | 17..298 | 100 | <- | Plus |
BS12807.5prime Sequence
793 bp (789 high quality bases) assembled on 2006-10-13
> BS12807.5prime
GAAGTTATCACTCGACATGGAATTAGAGAAAGTAAAGATAAACAGCCTTC
ATTGTAATGATGCTGTGCTCTCTTCACTTCAAGCATCCCCTTCTGGGACA
TCCCCTCAGAGCGTTCCTTCAAAGGCGAATGTCGTCACCGAGGCTTCTAT
TATCGAAAAGACGAATCAACCACATAATGTTCAGGAAGATAATAACTACA
ATAGAGATTGCGACAGCCCCGAAAGTTCTAGCTGGGAGCAGGATAAGGAG
TTGGATGATCTGCGGAACTTGCACTCCTCCTCTCTAACAAACAGCGTAGT
GGTGGGGAAATCGACTGGCTCGCTAAACGGCGTCTACTCTATCACATCAG
TCACTTCCGAAACTAAAACGCTTGAAAGTGTTGTCACGACCAACTCTGCT
AGTGGGTCGGCATGCTTAAGCAATACACCCACCGCTGATCACATAAAGAA
ACGTATCCCAAGCAGTCGAACGCCGACAAGAAAGGCACTGAGAATCAAAT
TCTACCGGAACGGGGATCGTTTTTATCCGGGTATAACAATTCCCGTGTCT
AACGAACGGTACAGATCCTTTGAAAGACTTTTTGAAGACCTAACCCGTCT
GTTGGAAGAGAATGTAAAGATACCAGGTGCTGTTCGCACCATCTACAACT
TGTGTGGGAAGAAGATTACCTCTCTCGATGAATTGGAAGATGGACAGAGC
TATGTTTGTTCCTGCAATAACAAGAATTTTAAGAAGGTTGAGTACAACAC
TGGTTCCCAGCCTTTGTCCAATCTGCCGCTGAGCAATAGTCGT
BS12807.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17528-PD | 2247 | CG17528-RD | 1..777 | 17..793 | 3785 | 99.4 | Plus |
| CG17528-PC | 2247 | CG17528-RC | 1..777 | 17..793 | 3785 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17528-RD | 4686 | CG17528-RD | 416..1193 | 16..793 | 3830 | 99.5 | Plus |
| CG17528-RC | 2645 | CG17528-RC | 210..987 | 16..793 | 3830 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4819288..4819936 | 664..16 | 3200 | 99.5 | Minus |
| 2R | 25286936 | 2R | 4819101..4819231 | 793..663 | 640 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:45:38 has no hits.
BS12807.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:44 Download gff for
BS12807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-PC | 1..777 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:33:15 Download gff for
BS12807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 206..987 | 10..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:43 Download gff for
BS12807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 206..987 | 10..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:43 Download gff for
BS12807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4819101..4819229 | 665..793 | 99 | <- | Minus |
| 2R | 4819288..4819940 | 8..664 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:33:15 Download gff for
BS12807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 706606..706734 | 665..793 | 99 | <- | Minus |
| arm_2R | 706793..707445 | 8..664 | 98 | | Minus |
BS12807.complete Sequence
2279 bp assembled on 2012-04-25
GenBank Submission: KX803179
> BS12807.complete
GAAGTTATCACTCGACATGGAATTAGAGAAAGTAAAGATAAACAGCCTTC
ATTGTAATGATGCTGTGCTCTCTTCACTTCAAGCATCCCCTTCTGGGACA
TCCCCTCAGAGCGTTCCTTCAAAGGCGAATGTCGTCACCGAGGCTTCTAT
TATCGAAAAGACGAATCAACCACATAATGTTCAGGAAGATAATAACTACA
ATAGAGATTGCGACAGCCCCGAAAGTTCTAGCTGGGAGCAGGATAAGGAG
TTGGATGATCTGCGGAACTTGCACTCCTCCTCTCTAACAAACAGCGTAGT
GGTGGGGAAATCGACTGGCTCGCTAAACGGCGTCTACTCTATCACATCAG
TCACTTCCGAAACTAAAACGCTTGAAAGTGTTGTCACGACCAACTCTGCT
AGTGGGTCGGCATGCTTAAGCAATACACCCACCGCTGATCACATAAAGAA
ACGTATCCCAAGCAGTCGAACGCCGACAAGAAAGGCACTGAGAATCAAAT
TCTACCGGAACGGGGATCGTTTTTATCCGGGTATAACAATTCCCGTGTCT
AACGAACGGTACAGATCCTTTGAAAGACTTTTTGAAGACCTAACCCGTCT
GTTGGAAGAGAATGTAAAGATACCAGGTGCTGTTCGCACCATCTACAACT
TGTGTGGGAAGAAGATTACCTCTCTCGATGAATTGGAAGATGGACAGAGC
TATGTTTGTTCCTGCAATAACGAGAATTTTAAGAAGGTTGAGTACAACAC
TGGTTCCCAGCCTTTGTCCAATCTGCCGCTGAGCAATAGTCGTTCCAACA
GTCATCGATTGGCTAAGTGTCGACCATCGTCTCCCCTAAAAAATGGCTTG
CTTGCAGGCAGCAGTCCTTTCCCAGCTTGTGGCGGAGGAACGGGAAACGG
AAGTCCACTTATCGCTTCCAGATTAAGCGATCGAGTTACAGTGGTTCATC
CTCGTATTGTGACGCTGATACGTAGTGGAACTAAGTCGCGGCGTATTATG
CGATTATTGCTAAACAAGCGTAACAGCCCGAGCTTCGATCATGTGCTGAC
CGCCATTACGCAAGTGGTTCGCTTGGACACGGGCTATGTGAGAAAAGTAT
TCACTCTTTCCGGTATCCCAGTGGTCCGACTATCTGATTTTTTTGGGTCG
GATGATGTTTTCTTCGCTTATGGGACAGAGCGGATTAACACTGCGGAGGA
CTTTAAGTTAGAGGCGGAGGAGCAGCGAGCTATTAATGTCATTCGTAAGA
CCATGCGCACGACTGGAACCACATGCAAGGGACCTAAGCCTAAGATGCCC
ATAAAGAGCAAAAAAGTGTATCCTCCTTTGGTTGATTCGGAGCCATTTAA
GGCAGAAACCACACCAGAAGATGATAGGCATGCGGCTTTACTTACGAGCA
CTGGTATGGAGATCAATGAATTGCCATCGAATATTCGTAACACTTACTCT
CTGGGAAGAATAATTGGCGACGGCAACTTTGCCATTGTGTTTAAGATTAA
GCACCGCCAAACTGGTCATTCCTACGCCCTAAAAATAATAGACAAGAACA
AATGCAAGGGCAAGGAACACTACATAGACGCGGAAGTTCGCGTCATGAAA
AAATTAAATCATCCGCATATAATTTCGCTTATTTTGAGTGTAGACCAAAA
TACAAATATGTATCTTGTACTGGAATATGTAAGTGGTGGTGATTTATTCG
ACGCTATAACTCAGGTAACGAGGTTCTCAGAAAACCAGTCGCGCATTATG
ATTAGACATTTGGGTGCGGCCATGACTTATCTGCATTCAATGGGCATTGT
GCATCGAGATATAAAACCTGAGAATCTTCTAGTGAAATTGGATGAGCATG
GAAACGTTCTTGAACTAAAGCTTGCTGATTTTGGATTAGCATGTGAGGTA
AACGATCTTCTATATGCTGTCTGCGGGACTCCCACATATGTAGCACCAGA
GATATTGTTAGAAGTCGGATATGGGCTAAAGATTGACGTTTGGGCCGCTG
GAATCATTTTGTATATACTTCTATGCGGTTTTCCGCCGTTTGTAGCGCCT
GACAACCAACAGGAGCCGCTATTCGACGCTATTATCTCTGGCATTTATGA
GTTTCCAGATCCTTACTGGTCTGATATAGGGGACGGAGTGCGCGATCTTA
TTGCCAATATGCTTCAGGCGGATCCAGACGTTCGTTTCACAAGCGAAGAC
ATCCTTGATCACAGTTGGACGATTGGAAACAAGGGGAACGAGTGTACCAC
ATATAAAAGATGAAAGCTTTCTAGACCAT
BS12807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17528-RD | 2247 | CG17528-PD | 1..2247 | 17..2263 | 11175 | 99.8 | Plus |
| CG17528-RC | 2247 | CG17528-PC | 1..2247 | 17..2263 | 11175 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17528-RD | 4686 | CG17528-RD | 416..2663 | 16..2263 | 11180 | 99.8 | Plus |
| CG17528-RC | 2645 | CG17528-RC | 210..2457 | 16..2263 | 11180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4818207..4819231 | 1687..663 | 5110 | 99.9 | Minus |
| 2R | 25286936 | 2R | 4819288..4819936 | 664..16 | 3200 | 99.5 | Minus |
| 2R | 25286936 | 2R | 4817449..4817735 | 2263..1977 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 4817996..4818155 | 1833..1674 | 755 | 98.1 | Minus |
| 2R | 25286936 | 2R | 4817785..4817934 | 1981..1832 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:14:48 has no hits.
BS12807.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:30:25 Download gff for
BS12807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 203..2454 | 10..2263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:41 Download gff for
BS12807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RD | 406..2651 | 17..2262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:33 Download gff for
BS12807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 211..2456 | 17..2262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:05 Download gff for
BS12807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 208..2453 | 17..2262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:22 Download gff for
BS12807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 211..2456 | 17..2262 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:22 Download gff for
BS12807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4817785..4817934 | 1832..1981 | 100 | <- | Minus |
| 2R | 4817998..4818143 | 1686..1831 | 100 | <- | Minus |
| 2R | 4817450..4817730 | 1982..2262 | 100 | <- | Minus |
| 2R | 4818209..4819229 | 665..1685 | 99 | <- | Minus |
| 2R | 4819288..4819935 | 17..664 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:33 Download gff for
BS12807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 704955..705235 | 1982..2262 | 100 | <- | Minus |
| arm_2R | 705290..705439 | 1832..1981 | 100 | <- | Minus |
| arm_2R | 705503..705648 | 1686..1831 | 100 | <- | Minus |
| arm_2R | 705714..706734 | 665..1685 | 99 | <- | Minus |
| arm_2R | 706793..707440 | 17..664 | 99 | | Minus |
BS12807.pep Sequence
Translation from 16 to 2262
> BS12807.pep
MELEKVKINSLHCNDAVLSSLQASPSGTSPQSVPSKANVVTEASIIEKTN
QPHNVQEDNNYNRDCDSPESSSWEQDKELDDLRNLHSSSLTNSVVVGKST
GSLNGVYSITSVTSETKTLESVVTTNSASGSACLSNTPTADHIKKRIPSS
RTPTRKALRIKFYRNGDRFYPGITIPVSNERYRSFERLFEDLTRLLEENV
KIPGAVRTIYNLCGKKITSLDELEDGQSYVCSCNNENFKKVEYNTGSQPL
SNLPLSNSRSNSHRLAKCRPSSPLKNGLLAGSSPFPACGGGTGNGSPLIA
SRLSDRVTVVHPRIVTLIRSGTKSRRIMRLLLNKRNSPSFDHVLTAITQV
VRLDTGYVRKVFTLSGIPVVRLSDFFGSDDVFFAYGTERINTAEDFKLEA
EEQRAINVIRKTMRTTGTTCKGPKPKMPIKSKKVYPPLVDSEPFKAETTP
EDDRHAALLTSTGMEINELPSNIRNTYSLGRIIGDGNFAIVFKIKHRQTG
HSYALKIIDKNKCKGKEHYIDAEVRVMKKLNHPHIISLILSVDQNTNMYL
VLEYVSGGDLFDAITQVTRFSENQSRIMIRHLGAAMTYLHSMGIVHRDIK
PENLLVKLDEHGNVLELKLADFGLACEVNDLLYAVCGTPTYVAPEILLEV
GYGLKIDVWAAGIILYILLCGFPPFVAPDNQQEPLFDAIISGIYEFPDPY
WSDIGDGVRDLIANMLQADPDVRFTSEDILDHSWTIGNKGNECTTYKR*
BS12807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17528-PD | 748 | CG17528-PD | 1..748 | 1..748 | 3858 | 99.6 | Plus |
| CG17528-PC | 748 | CG17528-PC | 1..748 | 1..748 | 3858 | 99.6 | Plus |
| CaMKI-PI | 390 | CG1495-PI | 20..293 | 465..741 | 552 | 38.7 | Plus |
| CaMKI-PA | 405 | CG1495-PA | 20..308 | 465..741 | 526 | 36.7 | Plus |
| CaMKI-PG | 405 | CG1495-PG | 20..308 | 465..741 | 526 | 36.7 | Plus |
