Clone Sequence Records
BS12808.3prime Sequence
782 bp (751 high quality bases) assembled on 2006-10-13
> BS12808.3prime
ATGGTCTAGAAAGCTTCTAGTATTCCATGGCCACGGCCCCCGAACCGTTG
TGCCCCGCCCCGTTCTGTGCCACCGCCTCCATCTCGTGCTGAAACTTATC
CGGCAGCTGGCCGCTTTGCAGGATCTGCGATAGACGCTCCACCTCTGCCA
GAGAGCTGGCCCGCTTGATGGCCTCGCGGATGCGCTGCATGTCCTGCGGA
TTGGCCAGTCGTCCGCCTTCCGATCCCCTTCCCTTGCCATTCCCCGCCTC
TGCAGCTATGGCGGCTGCGGCGCTCATCTTGGACTTCCGGCTAATCTCCT
TTAGCACGTCCTTGCCCTGCTTGGTGCGGAAGAACTCCTGCGCCGCCTGG
CGGTCCTTCTGCTTGATCTTCCTGAAGTCGAGTAGCCGCAGCTGCGGGAA
CTTGTAGGCCATGTACTCGCGGTAGTTGGGCTTCGTGGATACCGGGTTGA
TAAGCAGGCAGATGGTTTCCAGCTTGGTGAATCCGACCAGGGGCTCTAAG
TCGCTCAGCTCCTGCAGGTTGTTGCCGGTGAGAATGATGGAGCCCAGGTT
GGGCACCGCCTCCTCCAGCCCTTCGCTGATGCGCAGGATGCGGTTGTTGT
TCAGCAGCAGGCACTTGAGGCGCGGCAGATGCGGCAGGTTGTCCAGCTTG
CGCAGATCGTTGTCGGACAAGTCGATGGTATCAAACTGGTCCAGAGTTGC
GCCCAGGTTCTCGATTTGTGGAATCTTATAGCCGCGCAAATCCAGCTCGC
GCTCCCGGCATGGGTTTATGTATTGCATCGAC
BS12808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1406-PA | 798 | U2A-RA | 33..798 | 782..17 | 3830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2A-RA | 1001 | CG1406-RA | 160..925 | 782..17 | 3830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7675438..7676203 | 17..782 | 3830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:15:16 has no hits.
BS12808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:45 Download gff for
BS12808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1406-PA | 33..798 | 17..782 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:23 Download gff for
BS12808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 160..929 | 12..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:17 Download gff for
BS12808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 160..929 | 12..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:17 Download gff for
BS12808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7675434..7676203 | 12..782 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:23 Download gff for
BS12808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3562939..3563708 | 12..782 | 99 | | Plus |
BS12808.5prime Sequence
828 bp (811 high quality bases) assembled on 2006-10-13
> BS12808.5prime
GAAGTTATCAGTCGACATGGTGAAACTAACGCCGGAGCTGATAAACCAGT
CGATGCAATACATAAACCCATGCCGGGAGCGCGAGCTGGATTTGCGCGGC
TATAAGATTCCACAAATCGAGAACCTGGGCGCAACTCTGGACCAGTTTGA
TACCATCGACTTGTCCGACAACGATCTGCGCAAGCTGGACAACCTGCCGC
ATCTGCCGCGCCTCAAGTGCCTGCTGCTGAACAACAACCGCATCCTGCGC
ATCAGCGAAGGGCTGGAGGAGGCGGTGCCCAACCTGGGCTCCATCATTCT
CACCGGCAACAACCTGCAGGAGCTGAGCGACTTAGAGCCCCTGGTCGGAT
TCACCAAGCTGGAAACCATCTGCCTGCTTATCAACCCGGTATCCACGAAG
CCCAACTACCGCGAGTACATGGCCTACAAGTTCCCGCAGCTGCGGCTACT
CGACTTCAGGAAGATCAAGCAGAAGGACCGCCAGGCGGCGCAGGAGTTCT
TCCGCACCAAGCAGGGCAAGGACGTGCTAAAGGAGATTAGCCGGAAGTCC
AAGATGAGCGCCGCAGCCGCCATAGCTGCAGAGGCGGGGAATGGCAAGGG
AAGGGGATCGGAAGGCGGACGACTGGCCAATCCGCAGGACATGCAGCGCA
TCCGCGAGGCCATCAAGCGGGCCAGCTCTCTGGCAGAGGTGGAGCGTCTA
TCGCAGATCCTGCAAAGCGGCCAGCTGCCGGATAAGTTTCAGCACGAGAT
GGAGGCGGTGGCACAGAACGGGGCGGGGCACAACGGTTCGGGGGCCGTGG
CCATGGAATACTAGAAGCTTTCTAGACC
BS12808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1406-PA | 798 | U2A-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2A-RA | 1001 | CG1406-RA | 128..925 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7675438..7676235 | 814..17 | 3990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:03:48 has no hits.
BS12808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:45 Download gff for
BS12808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1406-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:39 Download gff for
BS12808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 128..929 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:50 Download gff for
BS12808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 128..929 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:50 Download gff for
BS12808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7675434..7676235 | 17..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:39 Download gff for
BS12808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3562939..3563740 | 17..819 | 99 | | Minus |
BS12808.complete Sequence
830 bp assembled on 2006-11-01
GenBank Submission: FJ637298
> BS12808.complete
GAAGTTATCAGTCGACATGGTGAAACTAACGCCGGAGCTGATAAACCAGT
CGATGCAATACATAAACCCATGCCGGGAGCGCGAGCTGGATTTGCGCGGC
TATAAGATTCCACAAATCGAGAACCTGGGCGCAACTCTGGACCAGTTTGA
TACCATCGACTTGTCCGACAACGATCTGCGCAAGCTGGACAACCTGCCGC
ATCTGCCGCGCCTCAAGTGCCTGCTGCTGAACAACAACCGCATCCTGCGC
ATCAGCGAAGGGCTGGAGGAGGCGGTGCCCAACCTGGGCTCCATCATTCT
CACCGGCAACAACCTGCAGGAGCTGAGCGACTTAGAGCCCCTGGTCGGAT
TCACCAAGCTGGAAACCATCTGCCTGCTTATCAACCCGGTATCCACGAAG
CCCAACTACCGCGAGTACATGGCCTACAAGTTCCCGCAGCTGCGGCTACT
CGACTTCAGGAAGATCAAGCAGAAGGACCGCCAGGCGGCGCAGGAGTTCT
TCCGCACCAAGCAGGGCAAGGACGTGCTAAAGGAGATTAGCCGGAAGTCC
AAGATGAGCGCCGCAGCCGCCATAGCTGCAGAGGCGGGGAATGGCAAGGG
AAGGGGATCGGAAGGCGGACGACTGGCCAATCCGCAGGACATGCAGCGCA
TCCGCGAGGCCATCAAGCGGGCCAGCTCTCTGGCAGAGGTGGAGCGTCTA
TCGCAGATCCTGCAAAGCGGCCAGCTGCCGGATAAGTTTCAGCACGAGAT
GGAGGCGGTGGCACAGAACGGGGCGGGGCACAACGGTTCGGGGGCCGTGG
CCATGGAATACTAGAAGCTTTCTAGACCAT
BS12808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2A-RA | 798 | CG1406-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2A-RA | 1001 | CG1406-RA | 128..925 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7675438..7676235 | 814..17 | 3990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:03:29 has no hits.
BS12808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:01 Download gff for
BS12808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:14 Download gff for
BS12808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 118..919 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:50 Download gff for
BS12808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 128..925 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:01 Download gff for
BS12808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 118..919 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:47 Download gff for
BS12808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 128..925 | 17..814 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:47 Download gff for
BS12808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7675438..7676235 | 17..814 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:50 Download gff for
BS12808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3562943..3563740 | 17..814 | 100 | | Minus |
BS12808.pep Sequence
Translation from 16 to 813
> BS12808.pep
MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLS
DNDLRKLDNLPHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNL
QELSDLEPLVGFTKLETICLLINPVSTKPNYREYMAYKFPQLRLLDFRKI
KQKDRQAAQEFFRTKQGKDVLKEISRKSKMSAAAAIAAEAGNGKGRGSEG
GRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLPDKFQHEMEAVAQ
NGAGHNGSGAVAMEY*
BS12808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2A-PA | 265 | CG1406-PA | 1..265 | 1..265 | 1341 | 100 | Plus |
| tilB-PA | 395 | CG14620-PA | 1..232 | 1..222 | 153 | 28.6 | Plus |
