Clone Sequence Records
BS12809.5prime Sequence
730 bp (711 high quality bases) assembled on 2006-10-13
> BS12809.5prime
GAAGTTATCAGTCGACATGCTGCGGAATAGCACTTACCAGTACAATCTGC
CCGTCGATTACCACAATATTCAGCAAATGGCAGTCGCTGGCGACATGATG
GAGGACTTTGTGGTCATATTTCGCGATATGATGGGACGGTACCTCGACAT
TGGCGAGGATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCAGA
CGGGCCTCTGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAGTT
TCTCGGACGTGCACGGCGCCTCTGGACAGGATTAAAGTGTACTTGCAGGT
ACAAACACAAAGAATGGGAATCTCAGAGTGTATGCACATCATGCTGAACG
AGGGCGGATCGCGGAGCATGTGGCGAGGCAATGGCATCAATGTGTTGAAG
ATTGCCCCCGAAACGGCTTTCAAGTTCGCTGCCTACGAACAGATGAAGCG
ACTGATTCGCGGTGACGATGGCAGCCGCCAGATGAGCATCGTGGAGCGAT
TCTATGCGGGCGCAGCGGCAGGCGGAATTTCACAGACCATCATCTACCCC
ATGGAAGTATTAAAGACGCGCCTGGCGCTCCGGAGAACGGGACAGTATGC
GGGTATTGCCGATGCGGCGGTCAAGATCTACAAGCAGGAAGGAGTGCGCA
GCTTCTATCGTGGCTATGTACCGAACATCCTGGGTATTCTGCCCTATGCC
GGCATCGATTTGGCGGTATATGAAACCCCT
BS12809.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-PC | 1092 | CG32103-RC | 1..712 | 17..728 | 3535 | 99.8 | Plus |
CG32103-PB | 1752 | CG32103-RB | 784..1372 | 140..728 | 2920 | 99.8 | Plus |
CG32103-PA | 1752 | CG32103-RA | 784..1372 | 140..728 | 2920 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-RC | 2060 | CG32103-RC | 419..1130 | 17..728 | 3545 | 99.9 | Plus |
CG32103-RE | 3836 | CG32103-RE | 1108..1696 | 140..728 | 2930 | 99.8 | Plus |
CG32103-RD | 1603 | CG32103-RD | 85..673 | 140..728 | 2930 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12404507..12404939 | 728..296 | 2165 | 100 | Minus |
3L | 28110227 | 3L | 12405000..12405161 | 300..139 | 795 | 99.4 | Minus |
3L | 28110227 | 3L | 12408110..12408232 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:28:41 has no hits.
BS12809.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:46 Download gff for
BS12809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-PC | 1..713 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:07 Download gff for
BS12809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 419..1131 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:18 Download gff for
BS12809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 419..1131 | 17..730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:18 Download gff for
BS12809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12404506..12404936 | 299..730 | 99 | <- | Minus |
3L | 12405002..12405160 | 140..298 | 99 | <- | Minus |
3L | 12408110..12408232 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:07 Download gff for
BS12809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12397606..12398036 | 299..730 | 99 | <- | Minus |
arm_3L | 12398102..12398260 | 140..298 | 99 | <- | Minus |
arm_3L | 12401210..12401332 | 17..139 | 100 | | Minus |
BS12809.3prime Sequence
745 bp (684 high quality bases) assembled on 2006-10-13
> BS12809.3prime
ATGGTCTAGAAAGCTTTCACGACATCTTAATGCCCAGGGCGCGACTCGTA
TACTCGTACACCACGTAGCTGATGGACACCGCCGGCAGGACCTTGAGGAA
GTTTGGCGTTATGCCGCGGTACAGCCCCGTCAGTCCCTCCTGTCGCACGA
TCTTGCGGAACAGGCCCGTCATCGTTTCCTCGCCGCTGTGCGCGTCGCTG
CTCTTCAGGGGTATTTGCGTTTTCCGCTTTTGATTGGCAATTGTTTCGGC
GGCTTGTGCCTGTAGCCGAGTGCGCACCAGGGCCAGCGGGTACGAGCAGA
GCTGCCCGAGTGTGCTCGATGTACTGCCGCATGCGAGGAGCACTAGAAAG
CTGGGCTGCTCGTTGTTGTCGTGATTGGCAATGTACCGCCTCTTGAGGGT
TTCATATACCGCCAAATCGATGCCGGCATAGGGCAGAATACCCAGGATGT
TCGGTACATAGCCACGATAGAAGCTGCGCACTCCTTCCTGCTTGTAGATC
TTGACCGCCGCATCGGCAATACCCGCATACTGTCCCGTTCTCCGGAGCGC
CAGGCGCGTCTTTAATACTTCCATGGGGTAGATGATGGTCTGTGAAATTC
CGCCTGCCGCTGCGCCCGCATAGAATCGCTCCACGATGCTCATCTGGCGG
CTGCCATCGTCACCGCGAATCAGTCGCTTCATCTGTTCGTAGGCAGCGAA
CTTGAAAAGCCGTTTCGGGGGCAATCTTCCACACATTGATGCCAT
BS12809.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-PB | 1752 | CG32103-RB | 1062..1752 | 707..17 | 3455 | 100 | Minus |
CG32103-PC | 1092 | CG32103-RC | 402..1092 | 707..17 | 3455 | 100 | Minus |
CG32103-PA | 1752 | CG32103-RA | 1062..1752 | 707..17 | 3455 | 100 | Minus |
CG32103-PB | 1752 | CG32103-RB | 1025..1064 | 745..706 | 175 | 97.5 | Minus |
CG32103-PC | 1092 | CG32103-RC | 365..404 | 745..706 | 175 | 97.5 | Minus |
CG32103-PA | 1752 | CG32103-RA | 1025..1064 | 745..706 | 175 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-RE | 3836 | CG32103-RE | 1349..2076 | 745..17 | 3605 | 99.7 | Minus |
CG32103-RD | 1603 | CG32103-RD | 326..1053 | 745..17 | 3605 | 99.7 | Minus |
CG32103-RC | 2060 | CG32103-RC | 783..1510 | 745..17 | 3605 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12404363..12404854 | 253..745 | 2400 | 99.6 | Plus |
3L | 28110227 | 3L | 12404055..12404292 | 17..254 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:58:35 has no hits.
BS12809.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:45 Download gff for
BS12809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-PA | 1025..1752 | 17..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:00 Download gff for
BS12809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 783..1517 | 8..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:44 Download gff for
BS12809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 783..1517 | 8..745 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:44 Download gff for
BS12809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12404044..12404290 | 8..252 | 98 | <- | Plus |
3L | 12404363..12404854 | 253..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:00 Download gff for
BS12809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12397144..12397390 | 8..252 | 98 | <- | Plus |
arm_3L | 12397463..12397954 | 253..745 | 99 | | Plus |
BS12809.complete Sequence
1124 bp assembled on 2006-11-01
GenBank Submission: FJ637299
> BS12809.complete
GAAGTTATCAGTCGACATGCTGCGGAATAGCACTTACCAGTACAATCTGC
CCGTCGATTACCACAATATTCAGCAAATGGCAGTCGCTGGCGACATGATG
GAGGACTTTGTGGTCATATTTCGCGATATGATGGGACGGTACCTCGACAT
TGGCGAGGATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCAGA
CGGGCCTCTGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAGTT
TCTCGGACGTGCACGGCGCCTCTGGACAGGATTAAAGTGTACTTGCAGGT
ACAAACACAAAGAATGGGAATCTCAGAGTGTATGCACATCATGCTGAACG
AGGGCGGATCGCGGAGCATGTGGCGAGGCAATGGCATCAATGTGTTGAAG
ATTGCCCCCGAAACGGCTTTCAAGTTCGCTGCCTACGAACAGATGAAGCG
ACTGATTCGCGGTGACGATGGCAGCCGCCAGATGAGCATCGTGGAGCGAT
TCTATGCGGGCGCAGCGGCAGGCGGAATTTCACAGACCATCATCTACCCC
ATGGAAGTATTAAAGACGCGCCTGGCGCTCCGGAGAACGGGACAGTATGC
GGGTATTGCCGATGCGGCGGTCAAGATCTACAAGCAGGAAGGAGTGCGCA
GCTTCTATCGTGGCTATGTACCGAACATCCTGGGTATTCTGCCCTATGCC
GGCATCGATTTGGCGGTATATGAAACCCTCAAGAGGCGGTACATTGCCAA
TCACGACAACAACGAGCAGCCCAGCTTTCTAGTGCTCCTCGCATGCGGCA
GTACATCGAGCACACTCGGGCAGCTCTGCTCGTACCCGCTGGCCCTGGTG
CGCACTCGGCTACAGGCACAAGCCGCCGAAACAATTGCCAATCAAAAGCG
GAAAACGCAAATACCCCTGAAGAGCAGCGACGCGCACAGCGGCGAGGAAA
CGATGACGGGCCTGTTCCGCAAGATCGTGCGACAGGAGGGACTGACGGGG
CTGTACCGCGGCATAACGCCAAACTTCCTCAAGGTCCTGCCGGCGGTGTC
CATCAGCTACGTGGTGTACGAGTATACGAGTCGCGCCCTGGGCATTAAGA
TGTCGTGAAAGCTTTCTAGACCAT
BS12809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-RC | 1092 | CG32103-PC | 1..1092 | 17..1108 | 5445 | 99.9 | Plus |
CG32103-RE | 1752 | CG32103-PE | 784..1752 | 140..1108 | 4830 | 99.9 | Plus |
CG32103-RD | 1053 | CG32103-PD | 85..1053 | 140..1108 | 4830 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-RC | 2060 | CG32103-RC | 419..1510 | 17..1108 | 5445 | 99.9 | Plus |
CG32103-RE | 3836 | CG32103-RE | 1108..2076 | 140..1108 | 4830 | 99.9 | Plus |
CG32103-RD | 1603 | CG32103-RD | 85..1053 | 140..1108 | 4830 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12404363..12404939 | 872..296 | 2885 | 100 | Minus |
3L | 28110227 | 3L | 12404055..12404292 | 1108..871 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 12405000..12405161 | 300..139 | 795 | 99.4 | Minus |
3L | 28110227 | 3L | 12408110..12408232 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:15:30 has no hits.
BS12809.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:02 Download gff for
BS12809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 1..1092 | 17..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:16 Download gff for
BS12809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 415..1513 | 17..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:58 Download gff for
BS12809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 419..1509 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:02 Download gff for
BS12809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 415..1513 | 17..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:43 Download gff for
BS12809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 419..1509 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:43 Download gff for
BS12809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12404056..12404290 | 873..1107 | 100 | <- | Minus |
3L | 12404363..12404936 | 299..872 | 100 | <- | Minus |
3L | 12405002..12405160 | 140..298 | 99 | <- | Minus |
3L | 12408110..12408232 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:58 Download gff for
BS12809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12397156..12397390 | 873..1107 | 100 | <- | Minus |
arm_3L | 12397463..12398036 | 299..872 | 100 | <- | Minus |
arm_3L | 12398102..12398260 | 140..298 | 99 | <- | Minus |
arm_3L | 12401210..12401332 | 17..139 | 100 | | Minus |
BS12809.pep Sequence
Translation from 16 to 1107
> BS12809.pep
MLRNSTYQYNLPVDYHNIQQMAVAGDMMEDFVVIFRDMMGRYLDIGEDMN
VPDDFTQKEMQTGLWWRHLVAGGIAGAVSRTCTAPLDRIKVYLQVQTQRM
GISECMHIMLNEGGSRSMWRGNGINVLKIAPETAFKFAAYEQMKRLIRGD
DGSRQMSIVERFYAGAAAGGISQTIIYPMEVLKTRLALRRTGQYAGIADA
AVKIYKQEGVRSFYRGYVPNILGILPYAGIDLAVYETLKRRYIANHDNNE
QPSFLVLLACGSTSSTLGQLCSYPLALVRTRLQAQAAETIANQKRKTQIP
LKSSDAHSGEETMTGLFRKIVRQEGLTGLYRGITPNFLKVLPAVSISYVV
YEYTSRALGIKMS*
BS12809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-PC | 363 | CG32103-PC | 1..363 | 1..363 | 1864 | 100 | Plus |
CG32103-PD | 350 | CG32103-PD | 24..350 | 37..363 | 1649 | 98.5 | Plus |
CG32103-PE | 583 | CG32103-PE | 262..583 | 42..363 | 1648 | 100 | Plus |
CG32103-PB | 583 | CG32103-PB | 262..583 | 42..363 | 1648 | 100 | Plus |
att-ORFA-PE | 290 | CG4241-PE | 1..273 | 69..352 | 422 | 35.8 | Plus |