Clone BS12809 Report

Search the DGRC for BS12809

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG32103-RC
Protein status:BS12809.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12809.5prime Sequence

730 bp (711 high quality bases) assembled on 2006-10-13

> BS12809.5prime
GAAGTTATCAGTCGACATGCTGCGGAATAGCACTTACCAGTACAATCTGC
CCGTCGATTACCACAATATTCAGCAAATGGCAGTCGCTGGCGACATGATG
GAGGACTTTGTGGTCATATTTCGCGATATGATGGGACGGTACCTCGACAT
TGGCGAGGATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCAGA
CGGGCCTCTGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAGTT
TCTCGGACGTGCACGGCGCCTCTGGACAGGATTAAAGTGTACTTGCAGGT
ACAAACACAAAGAATGGGAATCTCAGAGTGTATGCACATCATGCTGAACG
AGGGCGGATCGCGGAGCATGTGGCGAGGCAATGGCATCAATGTGTTGAAG
ATTGCCCCCGAAACGGCTTTCAAGTTCGCTGCCTACGAACAGATGAAGCG
ACTGATTCGCGGTGACGATGGCAGCCGCCAGATGAGCATCGTGGAGCGAT
TCTATGCGGGCGCAGCGGCAGGCGGAATTTCACAGACCATCATCTACCCC
ATGGAAGTATTAAAGACGCGCCTGGCGCTCCGGAGAACGGGACAGTATGC
GGGTATTGCCGATGCGGCGGTCAAGATCTACAAGCAGGAAGGAGTGCGCA
GCTTCTATCGTGGCTATGTACCGAACATCCTGGGTATTCTGCCCTATGCC
GGCATCGATTTGGCGGTATATGAAACCCCT

BS12809.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-PC 1092 CG32103-RC 1..712 17..728 3535 99.8 Plus
CG32103-PB 1752 CG32103-RB 784..1372 140..728 2920 99.8 Plus
CG32103-PA 1752 CG32103-RA 784..1372 140..728 2920 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-RC 2060 CG32103-RC 419..1130 17..728 3545 99.9 Plus
CG32103-RE 3836 CG32103-RE 1108..1696 140..728 2930 99.8 Plus
CG32103-RD 1603 CG32103-RD 85..673 140..728 2930 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12404507..12404939 728..296 2165 100 Minus
3L 28110227 3L 12405000..12405161 300..139 795 99.4 Minus
3L 28110227 3L 12408110..12408232 139..17 615 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:28:41 has no hits.

BS12809.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:46 Download gff for BS12809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-PC 1..713 17..730 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:07 Download gff for BS12809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 419..1131 17..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:18 Download gff for BS12809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 419..1131 17..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:18 Download gff for BS12809.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12404506..12404936 299..730 99 <- Minus
3L 12405002..12405160 140..298 99 <- Minus
3L 12408110..12408232 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:07 Download gff for BS12809.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12397606..12398036 299..730 99 <- Minus
arm_3L 12398102..12398260 140..298 99 <- Minus
arm_3L 12401210..12401332 17..139 100   Minus

BS12809.3prime Sequence

745 bp (684 high quality bases) assembled on 2006-10-13

> BS12809.3prime
ATGGTCTAGAAAGCTTTCACGACATCTTAATGCCCAGGGCGCGACTCGTA
TACTCGTACACCACGTAGCTGATGGACACCGCCGGCAGGACCTTGAGGAA
GTTTGGCGTTATGCCGCGGTACAGCCCCGTCAGTCCCTCCTGTCGCACGA
TCTTGCGGAACAGGCCCGTCATCGTTTCCTCGCCGCTGTGCGCGTCGCTG
CTCTTCAGGGGTATTTGCGTTTTCCGCTTTTGATTGGCAATTGTTTCGGC
GGCTTGTGCCTGTAGCCGAGTGCGCACCAGGGCCAGCGGGTACGAGCAGA
GCTGCCCGAGTGTGCTCGATGTACTGCCGCATGCGAGGAGCACTAGAAAG
CTGGGCTGCTCGTTGTTGTCGTGATTGGCAATGTACCGCCTCTTGAGGGT
TTCATATACCGCCAAATCGATGCCGGCATAGGGCAGAATACCCAGGATGT
TCGGTACATAGCCACGATAGAAGCTGCGCACTCCTTCCTGCTTGTAGATC
TTGACCGCCGCATCGGCAATACCCGCATACTGTCCCGTTCTCCGGAGCGC
CAGGCGCGTCTTTAATACTTCCATGGGGTAGATGATGGTCTGTGAAATTC
CGCCTGCCGCTGCGCCCGCATAGAATCGCTCCACGATGCTCATCTGGCGG
CTGCCATCGTCACCGCGAATCAGTCGCTTCATCTGTTCGTAGGCAGCGAA
CTTGAAAAGCCGTTTCGGGGGCAATCTTCCACACATTGATGCCAT

BS12809.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-PB 1752 CG32103-RB 1062..1752 707..17 3455 100 Minus
CG32103-PC 1092 CG32103-RC 402..1092 707..17 3455 100 Minus
CG32103-PA 1752 CG32103-RA 1062..1752 707..17 3455 100 Minus
CG32103-PB 1752 CG32103-RB 1025..1064 745..706 175 97.5 Minus
CG32103-PC 1092 CG32103-RC 365..404 745..706 175 97.5 Minus
CG32103-PA 1752 CG32103-RA 1025..1064 745..706 175 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-RE 3836 CG32103-RE 1349..2076 745..17 3605 99.7 Minus
CG32103-RD 1603 CG32103-RD 326..1053 745..17 3605 99.7 Minus
CG32103-RC 2060 CG32103-RC 783..1510 745..17 3605 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12404363..12404854 253..745 2400 99.6 Plus
3L 28110227 3L 12404055..12404292 17..254 1190 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:58:35 has no hits.

BS12809.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:45 Download gff for BS12809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-PA 1025..1752 17..745 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:00 Download gff for BS12809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 783..1517 8..745 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:44 Download gff for BS12809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 783..1517 8..745 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:44 Download gff for BS12809.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12404044..12404290 8..252 98 <- Plus
3L 12404363..12404854 253..745 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:00 Download gff for BS12809.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12397144..12397390 8..252 98 <- Plus
arm_3L 12397463..12397954 253..745 99   Plus

BS12809.complete Sequence

1124 bp assembled on 2006-11-01

GenBank Submission: FJ637299

> BS12809.complete
GAAGTTATCAGTCGACATGCTGCGGAATAGCACTTACCAGTACAATCTGC
CCGTCGATTACCACAATATTCAGCAAATGGCAGTCGCTGGCGACATGATG
GAGGACTTTGTGGTCATATTTCGCGATATGATGGGACGGTACCTCGACAT
TGGCGAGGATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCAGA
CGGGCCTCTGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAGTT
TCTCGGACGTGCACGGCGCCTCTGGACAGGATTAAAGTGTACTTGCAGGT
ACAAACACAAAGAATGGGAATCTCAGAGTGTATGCACATCATGCTGAACG
AGGGCGGATCGCGGAGCATGTGGCGAGGCAATGGCATCAATGTGTTGAAG
ATTGCCCCCGAAACGGCTTTCAAGTTCGCTGCCTACGAACAGATGAAGCG
ACTGATTCGCGGTGACGATGGCAGCCGCCAGATGAGCATCGTGGAGCGAT
TCTATGCGGGCGCAGCGGCAGGCGGAATTTCACAGACCATCATCTACCCC
ATGGAAGTATTAAAGACGCGCCTGGCGCTCCGGAGAACGGGACAGTATGC
GGGTATTGCCGATGCGGCGGTCAAGATCTACAAGCAGGAAGGAGTGCGCA
GCTTCTATCGTGGCTATGTACCGAACATCCTGGGTATTCTGCCCTATGCC
GGCATCGATTTGGCGGTATATGAAACCCTCAAGAGGCGGTACATTGCCAA
TCACGACAACAACGAGCAGCCCAGCTTTCTAGTGCTCCTCGCATGCGGCA
GTACATCGAGCACACTCGGGCAGCTCTGCTCGTACCCGCTGGCCCTGGTG
CGCACTCGGCTACAGGCACAAGCCGCCGAAACAATTGCCAATCAAAAGCG
GAAAACGCAAATACCCCTGAAGAGCAGCGACGCGCACAGCGGCGAGGAAA
CGATGACGGGCCTGTTCCGCAAGATCGTGCGACAGGAGGGACTGACGGGG
CTGTACCGCGGCATAACGCCAAACTTCCTCAAGGTCCTGCCGGCGGTGTC
CATCAGCTACGTGGTGTACGAGTATACGAGTCGCGCCCTGGGCATTAAGA
TGTCGTGAAAGCTTTCTAGACCAT

BS12809.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-RC 1092 CG32103-PC 1..1092 17..1108 5445 99.9 Plus
CG32103-RE 1752 CG32103-PE 784..1752 140..1108 4830 99.9 Plus
CG32103-RD 1053 CG32103-PD 85..1053 140..1108 4830 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-RC 2060 CG32103-RC 419..1510 17..1108 5445 99.9 Plus
CG32103-RE 3836 CG32103-RE 1108..2076 140..1108 4830 99.9 Plus
CG32103-RD 1603 CG32103-RD 85..1053 140..1108 4830 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12404363..12404939 872..296 2885 100 Minus
3L 28110227 3L 12404055..12404292 1108..871 1190 100 Minus
3L 28110227 3L 12405000..12405161 300..139 795 99.4 Minus
3L 28110227 3L 12408110..12408232 139..17 615 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:15:30 has no hits.

BS12809.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:02 Download gff for BS12809.complete
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 1..1092 17..1108 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:16 Download gff for BS12809.complete
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 415..1513 17..1117 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:58 Download gff for BS12809.complete
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 419..1509 17..1107 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:02 Download gff for BS12809.complete
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 415..1513 17..1117 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:43 Download gff for BS12809.complete
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 419..1509 17..1107 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:43 Download gff for BS12809.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12404056..12404290 873..1107 100 <- Minus
3L 12404363..12404936 299..872 100 <- Minus
3L 12405002..12405160 140..298 99 <- Minus
3L 12408110..12408232 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:58 Download gff for BS12809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12397156..12397390 873..1107 100 <- Minus
arm_3L 12397463..12398036 299..872 100 <- Minus
arm_3L 12398102..12398260 140..298 99 <- Minus
arm_3L 12401210..12401332 17..139 100   Minus

BS12809.pep Sequence

Translation from 16 to 1107

> BS12809.pep
MLRNSTYQYNLPVDYHNIQQMAVAGDMMEDFVVIFRDMMGRYLDIGEDMN
VPDDFTQKEMQTGLWWRHLVAGGIAGAVSRTCTAPLDRIKVYLQVQTQRM
GISECMHIMLNEGGSRSMWRGNGINVLKIAPETAFKFAAYEQMKRLIRGD
DGSRQMSIVERFYAGAAAGGISQTIIYPMEVLKTRLALRRTGQYAGIADA
AVKIYKQEGVRSFYRGYVPNILGILPYAGIDLAVYETLKRRYIANHDNNE
QPSFLVLLACGSTSSTLGQLCSYPLALVRTRLQAQAAETIANQKRKTQIP
LKSSDAHSGEETMTGLFRKIVRQEGLTGLYRGITPNFLKVLPAVSISYVV
YEYTSRALGIKMS*

BS12809.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-PC 363 CG32103-PC 1..363 1..363 1864 100 Plus
CG32103-PD 350 CG32103-PD 24..350 37..363 1649 98.5 Plus
CG32103-PE 583 CG32103-PE 262..583 42..363 1648 100 Plus
CG32103-PB 583 CG32103-PB 262..583 42..363 1648 100 Plus
att-ORFA-PE 290 CG4241-PE 1..273 69..352 422 35.8 Plus