Clone Sequence Records
BS12816.3prime Sequence
822 bp (756 high quality bases) assembled on 2006-10-13
> BS12816.3prime
ATGGTCTAGAAAGCTTTTAAAGCAGGGGTCGCAGAAAACTCAACCAGGCC
ACCTTAAGCAGGGCCAGTGCAAAGAGAAGGGAACCCACGCTGGTGATTAT
CAACGAGATGATATCTCTCTTGGCATGCTGATCCACTCTGCCCACCAAGA
AGCTGTGTATCACGGTGCTGGTAATGTGGGCGCCATCGAAACCAAAGCAG
GGAATGGCATTGATCAACGCCAATCCTATGCTGAAGACCACGTTATACTT
GAGGAGCAGCAGCCAGGCATCCGGCCAGGCTGCCTTTAATAAGCTATATC
TCGGCACAAAGGCGGATACCTCCACAGTTCGAGTGACATCCCATGGATGG
CCCACATAGATCACCGGCGGCAGCTTCTCTCCGCGAAAATTCTGTCGCTT
GAACGTCATTATGGCAGTGATATTTCGTATAAGCGGTCGTAGGCAGAATC
CCTCGTTGCAAACTCCGGACGAGCAGTGCTCGGAGACCTCCTCCAAAGTG
CGGCGCACATTGAGACATACATGCTGCGGCAGCTCCACCGGCACATCTCC
ATTTGCGTCCTCCACCACCTCGAAGCAGCTTACGTTCGGATTTAGTTCAT
CACAGCACTGTAGCTGACCATCAATGCTATGATGTGAGATGGCGCTGCTT
TCGTCGTTAAGCTGCACGAAGTCCGCACTCACACAGTAGCCCGGCTTGAG
CTTCAGAGAGTTCTGCAGGCATGTCACCCAACTCTCCTCGCTGTTTACTG
GGCAGCCGTTTACTTGGGTTATTTGATTGTCCACTTGCAAGCCGCGCTCT
CCCCTCAGCGGGGATTTCCTTG
BS12816.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8988-PA | 1527 | S2P-RA | 722..1527 | 822..17 | 4030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-RA | 2020 | CG8988-RA | 1009..1814 | 822..17 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11842309..11843114 | 17..822 | 4030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:11:47 has no hits.
BS12816.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:51 Download gff for
BS12816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8988-PA | 722..1527 | 17..822 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:11 Download gff for
BS12816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 1009..1819 | 12..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:22:04 Download gff for
BS12816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 1009..1819 | 12..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:22:04 Download gff for
BS12816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11842304..11843114 | 12..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:11 Download gff for
BS12816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7729809..7730619 | 12..822 | 99 | | Plus |
BS12816.5prime Sequence
879 bp (739 high quality bases) assembled on 2006-10-13
> BS12816.5prime
GAAGTTATCAGTCGACATGGATCCCTTCGTGTTCTTCATAGTACTGGCAT
CGCTTTATGGCGTTCTTTACTTTTTCGACCGCTTCTTCAAGAGTTGCATG
CACTACCCGTACGATGCCTTCCTCAAGAACACCGGGCTGAGTATAAATTT
CATGAGCCTCCACTGGCACACGAGTGCCTTTAACAGGACCCTCCTACGCT
GGGGATCTGCCGGTAACAGCTGCACCCGGAGAGTAATGATCACCAGCTTT
AATGTAGGAGTCCTGGTCACCTTTTCTCTGCTCCCGATCGGTCTGATCCT
GCTCATTGCCACTATCTTCAGCAGTGGTGAACAAGACAGCTCTTCGTCTG
TATCCTCGCCCGTTGGAGTCCCTGTGCAGCTGGAAATTCTACTGCCCGGC
GTCAACTTGCCGTTGGAGGAGATCGGATACTACATCACAACCCTTGTGCT
CTGCTTGGTGGTGCACGAGATGGGACACGCCCTGGCCGCTGTGATGGAGG
ATGTGCCTGTCACCGGGTTTGGAATAAAGTTCATCTTCTGCCTGCCGTTA
GCATACACGGAGCTCTCCCACGACCACTTAAACAGTCTACGTTGGTTCCG
CAAGCTACGTGTTCTGTGCGCTGGAATCTGGCATAATTTTGTGTTCGCTG
GCGTGTGCTATCTCTTAATCTCAACGGTGGGAATCACTATGTCACCTTTG
TACGCTTACAACCAACACGTAGTGGTCACTGAACTAACAAGGAAATCCCC
GCTGAGGGGAGAGCGCGGCTTGCAAGTGGACAATCAAATAACCCAAGTTA
ACGGCTGCCCAGTAAACAGCGAGGAGAGTTGGGTGACATGCCTTGCAAAC
TCTCTGAAGCTCAGGCCGGGCTACTGTGT
BS12816.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8988-PA | 1527 | S2P-RA | 1..827 | 17..843 | 4110 | 99.8 | Plus |
| CG8988-PA | 1527 | S2P-RA | 832..863 | 848..879 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-RA | 2020 | CG8988-RA | 287..1150 | 16..879 | 4245 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11843390..11843829 | 529..90 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 11842973..11843324 | 879..528 | 1670 | 98.3 | Minus |
| 2R | 25286936 | 2R | 11843879..11843954 | 91..16 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:09:57 has no hits.
BS12816.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:51 Download gff for
BS12816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8988-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:08 Download gff for
BS12816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 283..1150 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:37 Download gff for
BS12816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 283..1150 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:37 Download gff for
BS12816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11842973..11843322 | 530..879 | 98 | <- | Minus |
| 2R | 11843390..11843827 | 92..529 | 100 | <- | Minus |
| 2R | 11843879..11843958 | 9..91 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:08 Download gff for
BS12816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7730478..7730827 | 530..879 | 98 | <- | Minus |
| arm_2R | 7730895..7731332 | 92..529 | 100 | <- | Minus |
| arm_2R | 7731384..7731463 | 9..91 | 96 | | Minus |
BS12816.complete Sequence
1559 bp assembled on 2006-11-01
GenBank Submission: FJ637300
> BS12816.complete
GAAGTTATCAGTCGACATGGATCCCTTCGTGTTCTTCATAGTACTGGCAT
CGCTTTATGGCGTTCTTTACTTTTTCGACCGCTTCTTCAAGAGTTGCATG
CACTACCCGTACGATGCCTTCCTCAAGAACACCGGGCTGAGTATAAATTT
CATGAGCCTCCACTGGCACACGAGTGCCTTTAACAGGACCCTCCTACGCT
GGGGATCTGCCGGTAACAGCTGCACCCGGAGAGTAATGATCACCAGCTTT
AATGTAGGAGTCCTGGTCACCTTTTCTCTGCTCCCGATCGGTCTGATCCT
GCTCATTGCCACTATCTTCAGCAGTGGTGAACAAGACAGCTCTTCGTCTG
TATCCTCGCCCGTTGGAGTCCCTGTGCAGCTGGAAATTCTACTGCCCGGC
GTCAACTTGCCGTTGGAGGAGATCGGATACTACATCACAACCCTTGTGCT
CTGCTTGGTGGTGCACGAGATGGGACACGCCCTGGCCGCTGTGATGGAGG
ATGTGCCTGTCACCGGGTTTGGAATAAAGTTCATCTTCTGCCTGCCGTTA
GCATACACGGAGCTCTCCCACGACCACTTAAACAGTCTACGTTGGTTCCG
CAAGCTACGTGTTCTGTGCGCTGGAATCTGGCATAATTTTGTGTTCGCTG
GCGTGTGCTATCTCTTAATCTCAACGGTGGGAATCACTATGTCACCTTTG
TACGCTTACAACCAACACGTAGTGGTCACTGAACTAACAAGGAAATCCCC
GCTGAGGGGAGAGCGCGGCTTGCAAGTGGACAATCAAATAACCCAAGTAA
ACGGCTGCCCAGTAAACAGCGAGGAGAGTTGGGTGACATGCCTGCAGAAC
TCTCTGAAGCTCAAGCCGGGCTACTGTGTGAGTGCGGACTTCGTGCAGCT
TAACGACGAAAGCAGCGCCATCTCACATCATAGCATTGATGGTCAGCTAC
AGTGCTGTGATGAACTAAATCCGAACGTAAGCTGCTTCGAGGTGGTGGAG
GACGCAAATGGAGATGTGCCGGTGGAGCTGCCGCAGCATGTATGTCTCAA
TGTGCGCCGCACTTTGGAGGAGGTCTCCGAGCACTGCTCGTCCGGAGTTT
GCAACGAGGGATTCTGCCTACGACCGCTTATACGAAATATCACTGCCATA
ATGACGTTCAAGCGACAGAATTTTCGCGGAGAGAAGCTGCCGCCGGTGAT
CTATGTGGGCCATCCATGGGATGTCACTCGAACTGTGGAGGTATCCGCCT
TTGTGCCGAGATATAGCTTATTAAAGGCAGCCTGGCCGGATGCCTGGCTG
CTGCTCCTCAAGTATAACGTGGTCTTCAGCATAGGATTGGCGTTGATCAA
TGCCATTCCCTGCTTTGGTTTCGATGGCGCCCACATTACCAGCACCGTGA
TACACAGCTTCTTGGTGGGCAGAGTGGATCAGCATGCCAAGAGAGATATC
ATCTCGTTGATAATCACCAGCGTGGGTTCCCTTCTCTTTGCACTGGCCCT
GCTTAAGGTGGCCTGGTTGAGTTTTCTGCGACCCCTGCTTTAAAAGCTTT
CTAGACCAT
BS12816.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-RA | 1527 | CG8988-PA | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-RA | 2020 | CG8988-RA | 287..1814 | 16..1543 | 7640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11842309..11843324 | 1543..528 | 5080 | 100 | Minus |
| 2R | 25286936 | 2R | 11843390..11843829 | 529..90 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 11843879..11843954 | 91..16 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:01:49 has no hits.
BS12816.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:03 Download gff for
BS12816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 1..1527 | 17..1543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:17 Download gff for
BS12816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 281..1817 | 9..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:52 Download gff for
BS12816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 288..1812 | 17..1541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:03 Download gff for
BS12816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 281..1817 | 9..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:05 Download gff for
BS12816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 288..1812 | 17..1541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:05 Download gff for
BS12816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11842311..11843322 | 530..1541 | 100 | <- | Minus |
| 2R | 11843390..11843827 | 92..529 | 100 | <- | Minus |
| 2R | 11843879..11843953 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:52 Download gff for
BS12816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7729816..7730827 | 530..1541 | 100 | <- | Minus |
| arm_2R | 7730895..7731332 | 92..529 | 100 | <- | Minus |
| arm_2R | 7731384..7731458 | 17..91 | 100 | | Minus |
BS12816.pep Sequence
Translation from 16 to 1542
> BS12816.pep
MDPFVFFIVLASLYGVLYFFDRFFKSCMHYPYDAFLKNTGLSINFMSLHW
HTSAFNRTLLRWGSAGNSCTRRVMITSFNVGVLVTFSLLPIGLILLIATI
FSSGEQDSSSSVSSPVGVPVQLEILLPGVNLPLEEIGYYITTLVLCLVVH
EMGHALAAVMEDVPVTGFGIKFIFCLPLAYTELSHDHLNSLRWFRKLRVL
CAGIWHNFVFAGVCYLLISTVGITMSPLYAYNQHVVVTELTRKSPLRGER
GLQVDNQITQVNGCPVNSEESWVTCLQNSLKLKPGYCVSADFVQLNDESS
AISHHSIDGQLQCCDELNPNVSCFEVVEDANGDVPVELPQHVCLNVRRTL
EEVSEHCSSGVCNEGFCLRPLIRNITAIMTFKRQNFRGEKLPPVIYVGHP
WDVTRTVEVSAFVPRYSLLKAAWPDAWLLLLKYNVVFSIGLALINAIPCF
GFDGAHITSTVIHSFLVGRVDQHAKRDIISLIITSVGSLLFALALLKVAW
LSFLRPLL*
BS12816.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-PA | 508 | CG8988-PA | 1..508 | 1..508 | 2671 | 100 | Plus |
