Clone BS12818 Report

Search the DGRC for BS12818

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCpr11A-RA
Protein status:BS12818.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12818.3prime Sequence

834 bp (728 high quality bases) assembled on 2006-10-13

> BS12818.3prime
ATGGTCTAGAAAGCTTTTATGCGGTGGGCAGATACAGACGAGATGGCGTC
GCCAGGGGCACCTGAGGTGGCTGATAATCGTAGCCATTGCCGTTGCCATT
TCCGTATCCGTTTCCAACTCCATTTCCATTTCCGTATGCGTTTCCAGCTC
CATTTCCTTGTCCGTTTCCAACTCCATTTCCGTATCCGTTGCCAACTCCA
TTTCCGTATCCGTTTCCAACTCCATTACCGTAAGCATTGCCATTTCCATA
GGGAGACGTGTAGCTATAGTCATCGCCACTCTGTCCACTGCCCCTCAGAG
GACCTTGCGATCCTTGATCGGAGTCCAGGGTCTGCTGCAGGAACTGGAAA
CGGTTCTTGTTGCCCAACAGGCTGCTGGGATCCACGGTCTGGCGCTGTCC
GGCAGAAGCCAAAGGCTGGGGTTCGGGAATGTCCAGATCCAGCTCGGTGA
TGGGATGATAGCCGAACTCATCGGCGGTGTAACGGGTCTTGTACCGCTTG
CCATCGGCGCCGGTGAACGAGTAGGAGCCGCTGACCACGAAGGTCTTGTC
GTCCTTCAGTTTGCCCACGCTGCTCACTTCGATGCCGTTCTGGGTCTTCA
GTTCCAGCTTGAATTTCTTGCCCGAGTTGTAGTTCTGGAGGGTTTCGGTC
TTGGCCTTCATGACATCGCCGCTAAAGTGCACCGCCGGCTTGTCGTCATC
GATGTCCTCGGGCAGGGTGTAGATATCGCTGGGATTGTACTTGAAGAGGT
CCAGATTGCGATCTGTCAGATGCTTGACATCGGCAGCGGCCAGAGCAGCG
AAACCCCGAAGGATCAAAAAACTCTCATGTCGAC

BS12818.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2560-PA 813 CG2560-RA 5..813 825..17 3995 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11A-RA 1326 CG2560-RA 117..925 825..17 4015 99.8 Minus
Cpr11A-RA 1326 CG2560-RA 693..792 201..96 235 82.1 Minus
Cpr11A-RA 1326 CG2560-RA 741..846 249..150 235 82.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12488642..12489047 422..17 2030 100 Minus
X 23542271 X 12487828..12488041 816..603 1055 99.5 Minus
X 23542271 X 12488317..12488496 602..423 900 100 Minus
X 23542271 X 12488832..12488944 208..96 295 84.1 Minus
X 23542271 X 12488856..12488968 232..120 295 84.1 Minus
X 23542271 X 12488815..12488891 201..125 220 85.7 Minus
X 23542271 X 12488863..12488939 249..173 220 85.7 Minus
Blast to na_te.dros performed 2015-02-08 12:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 4063..4151 186..274 130 60.7 Plus

BS12818.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:52 Download gff for BS12818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2560-PA 1..813 17..828 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:51 Download gff for BS12818.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 113..928 13..828 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:34 Download gff for BS12818.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 113..928 13..828 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:34 Download gff for BS12818.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12487821..12488041 603..821 98 -> Minus
X 12488317..12488496 423..602 100 -> Minus
X 12488642..12489050 13..422 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:51 Download gff for BS12818.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12381854..12382074 603..821 98 -> Minus
arm_X 12382350..12382529 423..602 100 -> Minus
arm_X 12382675..12383083 13..422 99   Minus

BS12818.5prime Sequence

846 bp (743 high quality bases) assembled on 2006-10-13

> BS12818.5prime
GAAGTTATCAGTCGACATGAAGAGTTTTCTGATCCTTCTGGGTTTCGCTG
CTCTGGCCGCTGCCGATGTCAAGCATCTGACAGATCGCAATCTGGACCTC
TTCAAGTACAATCCCAGCGATATCTACACCCTGCCCGAGGACATCGATGA
CGACAAGCCGGCGGTGCACTTTAGCGGCGATGTCATGAAGGCCAAGACCG
AAACCCTCCAGAACTACAACTCGGGCAAGAAATTCAAGCTGGAACTGAAG
ACCCAGAACGGCATCGAAGTGAGCAGCGTGGGCAAACTGAAGGACGACAA
GACCTTCGTGGTCAGCGGCTCCTACTCGTTCACCGGCGCCGATGGCAAGC
GGTACAAGACCCGTTACACCGCCGATGAGTTCGGCTATCATCCCATCACC
GAGCTGGATCTGGACATTCCCGAACCCCAGCCTTTGGCTTCTGCCGGACA
GCGCCAGACCGTGGATCCCAGCAGCCTGTTGGGCAACAAGAACCGTTTCC
AGTTCCTGCAGCAGACCCTGGACTCCGATCAAGGATCGCAAGGTCCTCTG
AGGGGCAGTGGACAGAGTGGCGATGACTATAGCTACACGTCTCCCTATGG
AAATGGCAATGCTTACGGTAATGGAGTTGGAAACGGATACGGAAATGGAG
TTGGCAACGGATACGGAAATGGAGTTGGAAACGGACAAGGAAATGGAGCT
GGAAACGCATACGGAAATGGAAATGGAGTTGGAAACGGATACGGAAATGG
CAACGGCAATGGCTACGATTATCAGCCACCTCAGGTGCCCCTGGCGACGC
CATCTCGTCTGTATCTGCCCACCGCATAAAAGCTTTCTAGACCATT

BS12818.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2560-PA 813 CG2560-RA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11A-RA 1326 CG2560-RA 113..925 17..829 4065 100 Plus
Cpr11A-RA 1326 CG2560-RA 693..792 645..750 235 82.1 Plus
Cpr11A-RA 1326 CG2560-RA 741..846 597..696 235 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12488642..12489047 424..829 2030 100 Plus
X 23542271 X 12487827..12488041 29..243 1075 100 Plus
X 23542271 X 12488317..12488496 244..423 900 100 Plus
X 23542271 X 12488832..12488944 638..750 295 84.1 Plus
X 23542271 X 12488856..12488968 614..726 295 84.1 Plus
X 23542271 X 12488815..12488891 645..721 220 85.7 Plus
X 23542271 X 12488863..12488939 597..673 220 85.7 Plus
Blast to na_te.dros performed 2015-02-08 12:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 4063..4151 660..572 130 60.7 Minus

BS12818.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:52 Download gff for BS12818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2560-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:52 Download gff for BS12818.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 106..928 9..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:37 Download gff for BS12818.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 106..928 9..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:37 Download gff for BS12818.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12487827..12488041 29..243 100 -> Plus
X 12488317..12488496 244..423 100 -> Plus
X 12488642..12489050 424..833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:52 Download gff for BS12818.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12381860..12382074 29..243 100 -> Plus
arm_X 12382350..12382529 244..423 100 -> Plus
arm_X 12382675..12383083 424..833 99   Plus

BS12818.complete Sequence

845 bp assembled on 2006-11-01

GenBank Submission: FJ637301

> BS12818.complete
GAAGTTATCAGTCGACATGAAGAGTTTTCTGATCCTTCTGGGTTTCGCTG
CTCTGGCCGCTGCCGATGTCAAGCATCTGACAGATCGCAATCTGGACCTC
TTCAAGTACAATCCCAGCGATATCTACACCCTGCCCGAGGACATCGATGA
CGACAAGCCGGCGGTGCACTTTAGCGGCGATGTCATGAAGGCCAAGACCG
AAACCCTCCAGAACTACAACTCGGGCAAGAAATTCAAGCTGGAACTGAAG
ACCCAGAACGGCATCGAAGTGAGCAGCGTGGGCAAACTGAAGGACGACAA
GACCTTCGTGGTCAGCGGCTCCTACTCGTTCACCGGCGCCGATGGCAAGC
GGTACAAGACCCGTTACACCGCCGATGAGTTCGGCTATCATCCCATCACC
GAGCTGGATCTGGACATTCCCGAACCCCAGCCTTTGGCTTCTGCCGGACA
GCGCCAGACCGTGGATCCCAGCAGCCTGTTGGGCAACAAGAACCGTTTCC
AGTTCCTGCAGCAGACCCTGGACTCCGATCAAGGATCGCAAGGTCCTCTG
AGGGGCAGTGGACAGAGTGGCGATGACTATAGCTACACGTCTCCCTATGG
AAATGGCAATGCTTACGGTAATGGAGTTGGAAACGGATACGGAAATGGAG
TTGGCAACGGATACGGAAATGGAGTTGGAAACGGACAAGGAAATGGAGCT
GGAAACGCATACGGAAATGGAAATGGAGTTGGAAACGGATACGGAAATGG
CAACGGCAATGGCTACGATTATCAGCCACCTCAGGTGCCCCTGGCGACGC
CATCTCGTCTGTATCTGCCCACCGCATAAAAGCTTTCTAGACCAT

BS12818.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11A-RA 813 CG2560-PA 1..813 17..829 4065 100 Plus
Cpr11A-RA 813 CG2560-PA 598..710 638..750 295 84.1 Plus
Cpr11A-RA 813 CG2560-PA 622..734 614..726 295 84.1 Plus
Cpr11A-RA 813 CG2560-PA 581..657 645..721 220 85.7 Plus
Cpr11A-RA 813 CG2560-PA 629..705 597..673 220 85.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11A-RA 1326 CG2560-RA 113..925 17..829 4065 100 Plus
Cpr11A-RA 1326 CG2560-RA 710..822 638..750 295 84.1 Plus
Cpr11A-RA 1326 CG2560-RA 734..846 614..726 295 84.1 Plus
Cpr11A-RA 1326 CG2560-RA 693..769 645..721 220 85.7 Plus
Cpr11A-RA 1326 CG2560-RA 741..817 597..673 220 85.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12488642..12489047 424..829 2030 100 Plus
X 23542271 X 12487827..12488041 29..243 1075 100 Plus
X 23542271 X 12488317..12488496 244..423 900 100 Plus
X 23542271 X 12488832..12488944 638..750 295 84.1 Plus
X 23542271 X 12488856..12488968 614..726 295 84.1 Plus
X 23542271 X 12488815..12488891 645..721 220 85.7 Plus
X 23542271 X 12488863..12488939 597..673 220 85.7 Plus
Blast to na_te.dros performed 2014-11-27 19:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 4063..4151 660..572 130 60.7 Minus

BS12818.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:04 Download gff for BS12818.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:19 Download gff for BS12818.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 103..925 9..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:54 Download gff for BS12818.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 113..923 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:04 Download gff for BS12818.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 103..925 9..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:26 Download gff for BS12818.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 113..923 17..827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:26 Download gff for BS12818.complete
Subject Subject Range Query Range Percent Splice Strand
X 12487827..12488041 29..243 100 -> Plus
X 12488317..12488496 244..423 100 -> Plus
X 12488642..12489045 424..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:54 Download gff for BS12818.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12381860..12382074 29..243 100 -> Plus
arm_X 12382350..12382529 244..423 100 -> Plus
arm_X 12382675..12383078 424..827 100   Plus

BS12818.pep Sequence

Translation from 16 to 828

> BS12818.pep
MKSFLILLGFAALAAADVKHLTDRNLDLFKYNPSDIYTLPEDIDDDKPAV
HFSGDVMKAKTETLQNYNSGKKFKLELKTQNGIEVSSVGKLKDDKTFVVS
GSYSFTGADGKRYKTRYTADEFGYHPITELDLDIPEPQPLASAGQRQTVD
PSSLLGNKNRFQFLQQTLDSDQGSQGPLRGSGQSGDDYSYTSPYGNGNAY
GNGVGNGYGNGVGNGYGNGVGNGQGNGAGNAYGNGNGVGNGYGNGNGNGY
DYQPPQVPLATPSRLYLPTA*

BS12818.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11A-PA 270 CG2560-PA 1..270 1..270 1444 100 Plus
Cpr47Ef-PD 601 CG13214-PD 141..318 66..249 207 33.9 Plus
Cpr47Ef-PC 612 CG13214-PC 141..318 66..249 207 33.9 Plus
Cpr65Au-PB 106 CG18778-PB 22..100 53..126 148 38 Plus
Cpr65Au-PA 106 CG18778-PA 22..100 53..126 148 38 Plus