Clone Sequence Records
BS12818.3prime Sequence
834 bp (728 high quality bases) assembled on 2006-10-13
> BS12818.3prime
ATGGTCTAGAAAGCTTTTATGCGGTGGGCAGATACAGACGAGATGGCGTC
GCCAGGGGCACCTGAGGTGGCTGATAATCGTAGCCATTGCCGTTGCCATT
TCCGTATCCGTTTCCAACTCCATTTCCATTTCCGTATGCGTTTCCAGCTC
CATTTCCTTGTCCGTTTCCAACTCCATTTCCGTATCCGTTGCCAACTCCA
TTTCCGTATCCGTTTCCAACTCCATTACCGTAAGCATTGCCATTTCCATA
GGGAGACGTGTAGCTATAGTCATCGCCACTCTGTCCACTGCCCCTCAGAG
GACCTTGCGATCCTTGATCGGAGTCCAGGGTCTGCTGCAGGAACTGGAAA
CGGTTCTTGTTGCCCAACAGGCTGCTGGGATCCACGGTCTGGCGCTGTCC
GGCAGAAGCCAAAGGCTGGGGTTCGGGAATGTCCAGATCCAGCTCGGTGA
TGGGATGATAGCCGAACTCATCGGCGGTGTAACGGGTCTTGTACCGCTTG
CCATCGGCGCCGGTGAACGAGTAGGAGCCGCTGACCACGAAGGTCTTGTC
GTCCTTCAGTTTGCCCACGCTGCTCACTTCGATGCCGTTCTGGGTCTTCA
GTTCCAGCTTGAATTTCTTGCCCGAGTTGTAGTTCTGGAGGGTTTCGGTC
TTGGCCTTCATGACATCGCCGCTAAAGTGCACCGCCGGCTTGTCGTCATC
GATGTCCTCGGGCAGGGTGTAGATATCGCTGGGATTGTACTTGAAGAGGT
CCAGATTGCGATCTGTCAGATGCTTGACATCGGCAGCGGCCAGAGCAGCG
AAACCCCGAAGGATCAAAAAACTCTCATGTCGAC
BS12818.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2560-PA | 813 | CG2560-RA | 5..813 | 825..17 | 3995 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11A-RA | 1326 | CG2560-RA | 117..925 | 825..17 | 4015 | 99.8 | Minus |
Cpr11A-RA | 1326 | CG2560-RA | 693..792 | 201..96 | 235 | 82.1 | Minus |
Cpr11A-RA | 1326 | CG2560-RA | 741..846 | 249..150 | 235 | 82.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12488642..12489047 | 422..17 | 2030 | 100 | Minus |
X | 23542271 | X | 12487828..12488041 | 816..603 | 1055 | 99.5 | Minus |
X | 23542271 | X | 12488317..12488496 | 602..423 | 900 | 100 | Minus |
X | 23542271 | X | 12488832..12488944 | 208..96 | 295 | 84.1 | Minus |
X | 23542271 | X | 12488856..12488968 | 232..120 | 295 | 84.1 | Minus |
X | 23542271 | X | 12488815..12488891 | 201..125 | 220 | 85.7 | Minus |
X | 23542271 | X | 12488863..12488939 | 249..173 | 220 | 85.7 | Minus |
Blast to na_te.dros performed 2015-02-08 12:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 4063..4151 | 186..274 | 130 | 60.7 | Plus |
BS12818.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:52 Download gff for
BS12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2560-PA | 1..813 | 17..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:51 Download gff for
BS12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 113..928 | 13..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:34 Download gff for
BS12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 113..928 | 13..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:34 Download gff for
BS12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12487821..12488041 | 603..821 | 98 | -> | Minus |
X | 12488317..12488496 | 423..602 | 100 | -> | Minus |
X | 12488642..12489050 | 13..422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:51 Download gff for
BS12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12381854..12382074 | 603..821 | 98 | -> | Minus |
arm_X | 12382350..12382529 | 423..602 | 100 | -> | Minus |
arm_X | 12382675..12383083 | 13..422 | 99 | | Minus |
BS12818.5prime Sequence
846 bp (743 high quality bases) assembled on 2006-10-13
> BS12818.5prime
GAAGTTATCAGTCGACATGAAGAGTTTTCTGATCCTTCTGGGTTTCGCTG
CTCTGGCCGCTGCCGATGTCAAGCATCTGACAGATCGCAATCTGGACCTC
TTCAAGTACAATCCCAGCGATATCTACACCCTGCCCGAGGACATCGATGA
CGACAAGCCGGCGGTGCACTTTAGCGGCGATGTCATGAAGGCCAAGACCG
AAACCCTCCAGAACTACAACTCGGGCAAGAAATTCAAGCTGGAACTGAAG
ACCCAGAACGGCATCGAAGTGAGCAGCGTGGGCAAACTGAAGGACGACAA
GACCTTCGTGGTCAGCGGCTCCTACTCGTTCACCGGCGCCGATGGCAAGC
GGTACAAGACCCGTTACACCGCCGATGAGTTCGGCTATCATCCCATCACC
GAGCTGGATCTGGACATTCCCGAACCCCAGCCTTTGGCTTCTGCCGGACA
GCGCCAGACCGTGGATCCCAGCAGCCTGTTGGGCAACAAGAACCGTTTCC
AGTTCCTGCAGCAGACCCTGGACTCCGATCAAGGATCGCAAGGTCCTCTG
AGGGGCAGTGGACAGAGTGGCGATGACTATAGCTACACGTCTCCCTATGG
AAATGGCAATGCTTACGGTAATGGAGTTGGAAACGGATACGGAAATGGAG
TTGGCAACGGATACGGAAATGGAGTTGGAAACGGACAAGGAAATGGAGCT
GGAAACGCATACGGAAATGGAAATGGAGTTGGAAACGGATACGGAAATGG
CAACGGCAATGGCTACGATTATCAGCCACCTCAGGTGCCCCTGGCGACGC
CATCTCGTCTGTATCTGCCCACCGCATAAAAGCTTTCTAGACCATT
BS12818.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2560-PA | 813 | CG2560-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11A-RA | 1326 | CG2560-RA | 113..925 | 17..829 | 4065 | 100 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 693..792 | 645..750 | 235 | 82.1 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 741..846 | 597..696 | 235 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12488642..12489047 | 424..829 | 2030 | 100 | Plus |
X | 23542271 | X | 12487827..12488041 | 29..243 | 1075 | 100 | Plus |
X | 23542271 | X | 12488317..12488496 | 244..423 | 900 | 100 | Plus |
X | 23542271 | X | 12488832..12488944 | 638..750 | 295 | 84.1 | Plus |
X | 23542271 | X | 12488856..12488968 | 614..726 | 295 | 84.1 | Plus |
X | 23542271 | X | 12488815..12488891 | 645..721 | 220 | 85.7 | Plus |
X | 23542271 | X | 12488863..12488939 | 597..673 | 220 | 85.7 | Plus |
Blast to na_te.dros performed 2015-02-08 12:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 4063..4151 | 660..572 | 130 | 60.7 | Minus |
BS12818.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:52 Download gff for
BS12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2560-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:52 Download gff for
BS12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 106..928 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:37 Download gff for
BS12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 106..928 | 9..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:37 Download gff for
BS12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12487827..12488041 | 29..243 | 100 | -> | Plus |
X | 12488317..12488496 | 244..423 | 100 | -> | Plus |
X | 12488642..12489050 | 424..833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:52 Download gff for
BS12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12381860..12382074 | 29..243 | 100 | -> | Plus |
arm_X | 12382350..12382529 | 244..423 | 100 | -> | Plus |
arm_X | 12382675..12383083 | 424..833 | 99 | | Plus |
BS12818.complete Sequence
845 bp assembled on 2006-11-01
GenBank Submission: FJ637301
> BS12818.complete
GAAGTTATCAGTCGACATGAAGAGTTTTCTGATCCTTCTGGGTTTCGCTG
CTCTGGCCGCTGCCGATGTCAAGCATCTGACAGATCGCAATCTGGACCTC
TTCAAGTACAATCCCAGCGATATCTACACCCTGCCCGAGGACATCGATGA
CGACAAGCCGGCGGTGCACTTTAGCGGCGATGTCATGAAGGCCAAGACCG
AAACCCTCCAGAACTACAACTCGGGCAAGAAATTCAAGCTGGAACTGAAG
ACCCAGAACGGCATCGAAGTGAGCAGCGTGGGCAAACTGAAGGACGACAA
GACCTTCGTGGTCAGCGGCTCCTACTCGTTCACCGGCGCCGATGGCAAGC
GGTACAAGACCCGTTACACCGCCGATGAGTTCGGCTATCATCCCATCACC
GAGCTGGATCTGGACATTCCCGAACCCCAGCCTTTGGCTTCTGCCGGACA
GCGCCAGACCGTGGATCCCAGCAGCCTGTTGGGCAACAAGAACCGTTTCC
AGTTCCTGCAGCAGACCCTGGACTCCGATCAAGGATCGCAAGGTCCTCTG
AGGGGCAGTGGACAGAGTGGCGATGACTATAGCTACACGTCTCCCTATGG
AAATGGCAATGCTTACGGTAATGGAGTTGGAAACGGATACGGAAATGGAG
TTGGCAACGGATACGGAAATGGAGTTGGAAACGGACAAGGAAATGGAGCT
GGAAACGCATACGGAAATGGAAATGGAGTTGGAAACGGATACGGAAATGG
CAACGGCAATGGCTACGATTATCAGCCACCTCAGGTGCCCCTGGCGACGC
CATCTCGTCTGTATCTGCCCACCGCATAAAAGCTTTCTAGACCAT
BS12818.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11A-RA | 813 | CG2560-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Cpr11A-RA | 813 | CG2560-PA | 598..710 | 638..750 | 295 | 84.1 | Plus |
Cpr11A-RA | 813 | CG2560-PA | 622..734 | 614..726 | 295 | 84.1 | Plus |
Cpr11A-RA | 813 | CG2560-PA | 581..657 | 645..721 | 220 | 85.7 | Plus |
Cpr11A-RA | 813 | CG2560-PA | 629..705 | 597..673 | 220 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11A-RA | 1326 | CG2560-RA | 113..925 | 17..829 | 4065 | 100 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 710..822 | 638..750 | 295 | 84.1 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 734..846 | 614..726 | 295 | 84.1 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 693..769 | 645..721 | 220 | 85.7 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 741..817 | 597..673 | 220 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12488642..12489047 | 424..829 | 2030 | 100 | Plus |
X | 23542271 | X | 12487827..12488041 | 29..243 | 1075 | 100 | Plus |
X | 23542271 | X | 12488317..12488496 | 244..423 | 900 | 100 | Plus |
X | 23542271 | X | 12488832..12488944 | 638..750 | 295 | 84.1 | Plus |
X | 23542271 | X | 12488856..12488968 | 614..726 | 295 | 84.1 | Plus |
X | 23542271 | X | 12488815..12488891 | 645..721 | 220 | 85.7 | Plus |
X | 23542271 | X | 12488863..12488939 | 597..673 | 220 | 85.7 | Plus |
Blast to na_te.dros performed 2014-11-27 19:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 4063..4151 | 660..572 | 130 | 60.7 | Minus |
BS12818.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:04 Download gff for
BS12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:19 Download gff for
BS12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 103..925 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:54 Download gff for
BS12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 113..923 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:04 Download gff for
BS12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 103..925 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:26 Download gff for
BS12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 113..923 | 17..827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:26 Download gff for
BS12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12487827..12488041 | 29..243 | 100 | -> | Plus |
X | 12488317..12488496 | 244..423 | 100 | -> | Plus |
X | 12488642..12489045 | 424..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:54 Download gff for
BS12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12381860..12382074 | 29..243 | 100 | -> | Plus |
arm_X | 12382350..12382529 | 244..423 | 100 | -> | Plus |
arm_X | 12382675..12383078 | 424..827 | 100 | | Plus |
BS12818.pep Sequence
Translation from 16 to 828
> BS12818.pep
MKSFLILLGFAALAAADVKHLTDRNLDLFKYNPSDIYTLPEDIDDDKPAV
HFSGDVMKAKTETLQNYNSGKKFKLELKTQNGIEVSSVGKLKDDKTFVVS
GSYSFTGADGKRYKTRYTADEFGYHPITELDLDIPEPQPLASAGQRQTVD
PSSLLGNKNRFQFLQQTLDSDQGSQGPLRGSGQSGDDYSYTSPYGNGNAY
GNGVGNGYGNGVGNGYGNGVGNGQGNGAGNAYGNGNGVGNGYGNGNGNGY
DYQPPQVPLATPSRLYLPTA*
BS12818.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11A-PA | 270 | CG2560-PA | 1..270 | 1..270 | 1444 | 100 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 141..318 | 66..249 | 207 | 33.9 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 141..318 | 66..249 | 207 | 33.9 | Plus |
Cpr65Au-PB | 106 | CG18778-PB | 22..100 | 53..126 | 148 | 38 | Plus |
Cpr65Au-PA | 106 | CG18778-PA | 22..100 | 53..126 | 148 | 38 | Plus |