Clone Sequence Records
BS12819.3prime Sequence
721 bp (659 high quality bases) assembled on 2006-10-13
> BS12819.3prime
ATGGTCTAGAAAGCTTCTAATGTAATTGGAAACATTTAAACTTATCATAG
TTGTAAAACCCAGCTCGCACTTGACGTCCTCCAAAAAAACGTCCATTAAG
GTCCACTACAGCTTTAATTGCACTTTCGATCCGCCTAAACTCTACGAATA
TTTTAACTGCATCTTCTGGCACAGTTCCGAACGATTCGTGAATGATTACA
CTGTTCACTTCCCCGTACTTGGTGTTGCATTCGTCTTTTACCTCGGGTTC
CAATTCTTCGTCAACGTCCCCGGGTCCTACCATGTTGCGTAGAAGAACAA
CCTTGCTTGGTGATTTCATAATCTCCGTAATGCTGTATCCGATGTCACCA
CTCTCAGCCGCCGTGTCTACCATCTGGGGAGGAGGCATGGCCTTGTGGCT
GGGACTTGTTCCTATTTGGGAGCCAATAGAAGGTGGCGACAATGCTAGGG
GTGGCAGAAAAACGTCTTTTTCGTGTATGATCCGTCCACCACGTTTGGAG
GTTTTCTCTACTTGAAGAGCTATGGCCATGCCCTGCTCCGATTTTCCGAG
ACCTTGACCATCCTTAAACCCATATTTTGCCATAATTTTGGCGGCCACCG
AGCTGGCAGAATATGGCATAGTATTAGTGGCTTCACAACCACTATCAATG
GACATTTCTTGGAGGGAAGGAGGGGGAGCGATTGTGGCACCTCCCTGTTT
AACTACAAGGCCCGGAGATGG
BS12819.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17540-PA | 1212 | CG17540-RA | 508..1212 | 721..17 | 3475 | 99.7 | Minus |
CG17540-PC | 1092 | CG17540-RC | 388..1092 | 721..17 | 3475 | 99.7 | Minus |
CG17540-PB | 1116 | CG17540-RB | 412..1116 | 721..17 | 3475 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RB | 1354 | CG17540-RB | 535..1241 | 721..15 | 3505 | 99.7 | Minus |
Spf45-RC | 1257 | CG17540-RC | 438..1144 | 721..15 | 3505 | 99.7 | Minus |
Spf45-RA | 1397 | CG17540-RA | 578..1284 | 721..15 | 3505 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067145..23067754 | 112..721 | 3035 | 99.8 | Plus |
2L | 23513712 | 2L | 23066987..23067085 | 15..113 | 480 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:28:54 has no hits.
BS12819.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:53 Download gff for
BS12819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17540-PB | 412..1116 | 17..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:09 Download gff for
BS12819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 578..1290 | 7..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:20 Download gff for
BS12819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 578..1290 | 7..721 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:20 Download gff for
BS12819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23066981..23067083 | 7..111 | 95 | <- | Plus |
2L | 23067145..23067754 | 112..721 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:09 Download gff for
BS12819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22959713..22959815 | 7..111 | 95 | <- | Plus |
arm_2L | 22959877..22960486 | 112..721 | 99 | | Plus |
BS12819.5prime Sequence
801 bp (674 high quality bases) assembled on 2006-10-13
> BS12819.5prime
GAAGTTATCAGTCGACATGTTACAGACCCAGCTGGCAGTAAAAATGGCTG
TCAAAAAACCACTTATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTT
GCAGATCCAGAAGTTACATGTTTTGCTCCAATTACTACAGTTGTATCCAA
ACCATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGGATAAACA
GGGGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCCAAATGAA
TATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGG
CGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGTAAACGTG
GACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAAC
CTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACATGTACTT
GCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCC
CTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGCCACTAAT
ACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATA
TGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCA
TAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGATCATACAC
GAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGG
CTCCCAAATAGGAACAAGTCCAAGCCACAAGGCCATGCCTCCTCCCCAGA
T
BS12819.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17540-PA | 1212 | CG17540-RA | 73..857 | 17..801 | 3900 | 99.8 | Plus |
CG17540-PC | 1092 | CG17540-RC | 1..737 | 65..801 | 3660 | 99.8 | Plus |
CG17540-PB | 1116 | CG17540-RB | 65..761 | 105..801 | 3460 | 99.8 | Plus |
CG17540-PB | 1116 | CG17540-RB | 20..64 | 17..61 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RA | 1397 | CG17540-RA | 143..927 | 17..801 | 3910 | 99.9 | Plus |
Spf45-RC | 1257 | CG17540-RC | 48..787 | 62..801 | 3685 | 99.9 | Plus |
Spf45-RB | 1354 | CG17540-RB | 188..884 | 105..801 | 3470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067405..23068144 | 801..62 | 3685 | 99.9 | Minus |
2L | 23513712 | 2L | 23068200..23068244 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:11:53 has no hits.
BS12819.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:53 Download gff for
BS12819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17540-PA | 73..857 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:15 Download gff for
BS12819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 143..927 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:22:27 Download gff for
BS12819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 143..927 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:22:27 Download gff for
BS12819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23067405..23068144 | 62..801 | 99 | <- | Minus |
2L | 23068200..23068244 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:15 Download gff for
BS12819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22960137..22960876 | 62..801 | 99 | <- | Minus |
arm_2L | 22960932..22960976 | 17..61 | 100 | | Minus |
BS12819.complete Sequence
1172 bp assembled on 2006-11-01
GenBank Submission: FJ637302
> BS12819.complete
GAAGTTATCAGTCGACATGTTACAGACCCAGCTGGCAGTAAAAATGGCTG
TCAAAAAACCACTTATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTT
GCAGATCCAGAAGTTACATGTTTTGCTCCAATTACTACAGTTGTATCCAA
ACCATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGGATAAACA
GGGGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCCAAATGAA
TATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGG
CGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGTAAACGTG
GACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAAC
CTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACATGTACTT
GCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCC
CTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGCCACTAAT
ACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATA
TGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCA
TAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGATCATACAC
GAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGG
CTCCCAAATAGGAACAAGTCCCAGCCACAAGGCCATGCCTCCTCCCCAGA
TGGTAGACACGGCGGCTGAGAGTGGTGACATCGGATACAGCATTACGGAG
ATTATGAAATCACCAAGCAAGGTTGTTCTTCTACGCAACATGGTAGGACC
CGGGGACGTTGACGAAGAATTGGAACCCGAGGTAAAAGACGAATGCAACA
CCAAGTACGGGGAAGTGAACAGTGTAATCATTCACGAATCGTTCGGAACT
GTGCCAGAAGATGCAGTTAAAATATTCGTAGAGTTTAGGCGGATCGAAAG
TGCAATTAAAGCTGTAGTGGACCTTAATGGACGTTTTTTTGGAGGACGTC
AAGTGCGAGCTGGGTTTTACAACTATGATAAGTTTAAATGTTTCCAATTA
CATTAGAAGCTTTCTAGACCAT
BS12819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RA | 1212 | CG17540-PA | 73..1212 | 17..1156 | 5685 | 99.9 | Plus |
Spf45-RC | 1092 | CG17540-PC | 1..1092 | 65..1156 | 5445 | 99.9 | Plus |
Spf45-RB | 1116 | CG17540-PB | 65..1116 | 105..1156 | 5245 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RA | 1397 | CG17540-RA | 143..1284 | 17..1158 | 5695 | 99.9 | Plus |
Spf45-RC | 1257 | CG17540-RC | 48..1144 | 62..1158 | 5470 | 99.9 | Plus |
Spf45-RB | 1354 | CG17540-RB | 188..1241 | 105..1158 | 5255 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067145..23068144 | 1061..62 | 5000 | 100 | Minus |
2L | 23513712 | 2L | 23066987..23067085 | 1158..1060 | 480 | 99 | Minus |
2L | 23513712 | 2L | 23068200..23068244 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:41:35 has no hits.
BS12819.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:05 Download gff for
BS12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 73..1212 | 17..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:21 Download gff for
BS12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 204..1351 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:33 Download gff for
BS12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 148..1282 | 22..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:06 Download gff for
BS12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 204..1351 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:50 Download gff for
BS12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 148..1282 | 22..1156 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:50 Download gff for
BS12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23066989..23067083 | 1062..1156 | 98 | <- | Minus |
2L | 23067145..23068144 | 62..1061 | 100 | <- | Minus |
2L | 23068200..23068239 | 22..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:33 Download gff for
BS12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22959721..22959815 | 1062..1156 | 98 | <- | Minus |
arm_2L | 22959877..22960876 | 62..1061 | 100 | <- | Minus |
arm_2L | 22960932..22960971 | 22..61 | 100 | | Minus |
BS12819.pep Sequence
Translation from 16 to 1155
> BS12819.pep
MLQTQLAVKMAVKKPLMTPVVNLRSKRLADPEVTCFAPITTVVSKPLISG
KALPSILERINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDRE
DRDDKEKDRKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGL
VAKQGGATIAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDG
QGLGKSEQGMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGT
SPSHKAMPPPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDE
ELEPEVKDECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAV
VDLNGRFFGGRQVRAGFYNYDKFKCFQLH*
BS12819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-PA | 403 | CG17540-PA | 25..403 | 1..379 | 1960 | 100 | Plus |
Spf45-PC | 363 | CG17540-PC | 1..363 | 17..379 | 1885 | 100 | Plus |
Spf45-PB | 371 | CG17540-PB | 6..371 | 14..379 | 1819 | 95.9 | Plus |
pUf68-PJ | 545 | CG12085-PJ | 444..538 | 284..373 | 192 | 47.9 | Plus |
pUf68-PI | 545 | CG12085-PI | 444..538 | 284..373 | 192 | 47.9 | Plus |