Clone BS12819 Report

Search the DGRC for BS12819

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptSpf45-RC
Protein status:BS12819.pep: gold
Sequenced Size:16

Clone Sequence Records

BS12819.3prime Sequence

721 bp (659 high quality bases) assembled on 2006-10-13

> BS12819.3prime
ATGGTCTAGAAAGCTTCTAATGTAATTGGAAACATTTAAACTTATCATAG
TTGTAAAACCCAGCTCGCACTTGACGTCCTCCAAAAAAACGTCCATTAAG
GTCCACTACAGCTTTAATTGCACTTTCGATCCGCCTAAACTCTACGAATA
TTTTAACTGCATCTTCTGGCACAGTTCCGAACGATTCGTGAATGATTACA
CTGTTCACTTCCCCGTACTTGGTGTTGCATTCGTCTTTTACCTCGGGTTC
CAATTCTTCGTCAACGTCCCCGGGTCCTACCATGTTGCGTAGAAGAACAA
CCTTGCTTGGTGATTTCATAATCTCCGTAATGCTGTATCCGATGTCACCA
CTCTCAGCCGCCGTGTCTACCATCTGGGGAGGAGGCATGGCCTTGTGGCT
GGGACTTGTTCCTATTTGGGAGCCAATAGAAGGTGGCGACAATGCTAGGG
GTGGCAGAAAAACGTCTTTTTCGTGTATGATCCGTCCACCACGTTTGGAG
GTTTTCTCTACTTGAAGAGCTATGGCCATGCCCTGCTCCGATTTTCCGAG
ACCTTGACCATCCTTAAACCCATATTTTGCCATAATTTTGGCGGCCACCG
AGCTGGCAGAATATGGCATAGTATTAGTGGCTTCACAACCACTATCAATG
GACATTTCTTGGAGGGAAGGAGGGGGAGCGATTGTGGCACCTCCCTGTTT
AACTACAAGGCCCGGAGATGG

BS12819.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17540-PA 1212 CG17540-RA 508..1212 721..17 3475 99.7 Minus
CG17540-PC 1092 CG17540-RC 388..1092 721..17 3475 99.7 Minus
CG17540-PB 1116 CG17540-RB 412..1116 721..17 3475 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1354 CG17540-RB 535..1241 721..15 3505 99.7 Minus
Spf45-RC 1257 CG17540-RC 438..1144 721..15 3505 99.7 Minus
Spf45-RA 1397 CG17540-RA 578..1284 721..15 3505 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23067754 112..721 3035 99.8 Plus
2L 23513712 2L 23066987..23067085 15..113 480 99 Plus
Blast to na_te.dros performed on 2015-02-10 16:28:54 has no hits.

BS12819.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:53 Download gff for BS12819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17540-PB 412..1116 17..721 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:09 Download gff for BS12819.3prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 578..1290 7..721 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:20 Download gff for BS12819.3prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 578..1290 7..721 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:20 Download gff for BS12819.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 23066981..23067083 7..111 95 <- Plus
2L 23067145..23067754 112..721 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:09 Download gff for BS12819.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22959713..22959815 7..111 95 <- Plus
arm_2L 22959877..22960486 112..721 99   Plus

BS12819.5prime Sequence

801 bp (674 high quality bases) assembled on 2006-10-13

> BS12819.5prime
GAAGTTATCAGTCGACATGTTACAGACCCAGCTGGCAGTAAAAATGGCTG
TCAAAAAACCACTTATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTT
GCAGATCCAGAAGTTACATGTTTTGCTCCAATTACTACAGTTGTATCCAA
ACCATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGGATAAACA
GGGGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCCAAATGAA
TATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGG
CGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGTAAACGTG
GACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAAC
CTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACATGTACTT
GCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCC
CTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGCCACTAAT
ACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATA
TGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCA
TAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGATCATACAC
GAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGG
CTCCCAAATAGGAACAAGTCCAAGCCACAAGGCCATGCCTCCTCCCCAGA
T

BS12819.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17540-PA 1212 CG17540-RA 73..857 17..801 3900 99.8 Plus
CG17540-PC 1092 CG17540-RC 1..737 65..801 3660 99.8 Plus
CG17540-PB 1116 CG17540-RB 65..761 105..801 3460 99.8 Plus
CG17540-PB 1116 CG17540-RB 20..64 17..61 225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RA 1397 CG17540-RA 143..927 17..801 3910 99.9 Plus
Spf45-RC 1257 CG17540-RC 48..787 62..801 3685 99.9 Plus
Spf45-RB 1354 CG17540-RB 188..884 105..801 3470 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067405..23068144 801..62 3685 99.9 Minus
2L 23513712 2L 23068200..23068244 61..17 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:11:53 has no hits.

BS12819.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:53 Download gff for BS12819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17540-PA 73..857 17..801 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:15 Download gff for BS12819.5prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 143..927 17..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:22:27 Download gff for BS12819.5prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 143..927 17..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:22:27 Download gff for BS12819.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 23067405..23068144 62..801 99 <- Minus
2L 23068200..23068244 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:15 Download gff for BS12819.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22960137..22960876 62..801 99 <- Minus
arm_2L 22960932..22960976 17..61 100   Minus

BS12819.complete Sequence

1172 bp assembled on 2006-11-01

GenBank Submission: FJ637302

> BS12819.complete
GAAGTTATCAGTCGACATGTTACAGACCCAGCTGGCAGTAAAAATGGCTG
TCAAAAAACCACTTATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTT
GCAGATCCAGAAGTTACATGTTTTGCTCCAATTACTACAGTTGTATCCAA
ACCATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGGATAAACA
GGGGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCCAAATGAA
TATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGG
CGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGTAAACGTG
GACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAAC
CTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACATGTACTT
GCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCC
CTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGCCACTAAT
ACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATA
TGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCA
TAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGATCATACAC
GAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGG
CTCCCAAATAGGAACAAGTCCCAGCCACAAGGCCATGCCTCCTCCCCAGA
TGGTAGACACGGCGGCTGAGAGTGGTGACATCGGATACAGCATTACGGAG
ATTATGAAATCACCAAGCAAGGTTGTTCTTCTACGCAACATGGTAGGACC
CGGGGACGTTGACGAAGAATTGGAACCCGAGGTAAAAGACGAATGCAACA
CCAAGTACGGGGAAGTGAACAGTGTAATCATTCACGAATCGTTCGGAACT
GTGCCAGAAGATGCAGTTAAAATATTCGTAGAGTTTAGGCGGATCGAAAG
TGCAATTAAAGCTGTAGTGGACCTTAATGGACGTTTTTTTGGAGGACGTC
AAGTGCGAGCTGGGTTTTACAACTATGATAAGTTTAAATGTTTCCAATTA
CATTAGAAGCTTTCTAGACCAT

BS12819.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RA 1212 CG17540-PA 73..1212 17..1156 5685 99.9 Plus
Spf45-RC 1092 CG17540-PC 1..1092 65..1156 5445 99.9 Plus
Spf45-RB 1116 CG17540-PB 65..1116 105..1156 5245 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RA 1397 CG17540-RA 143..1284 17..1158 5695 99.9 Plus
Spf45-RC 1257 CG17540-RC 48..1144 62..1158 5470 99.9 Plus
Spf45-RB 1354 CG17540-RB 188..1241 105..1158 5255 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23068144 1061..62 5000 100 Minus
2L 23513712 2L 23066987..23067085 1158..1060 480 99 Minus
2L 23513712 2L 23068200..23068244 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:41:35 has no hits.

BS12819.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:05 Download gff for BS12819.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 73..1212 17..1156 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:21 Download gff for BS12819.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 204..1351 17..1166 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:33 Download gff for BS12819.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 148..1282 22..1156 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:06 Download gff for BS12819.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 204..1351 17..1166 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:50 Download gff for BS12819.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 148..1282 22..1156 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:50 Download gff for BS12819.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23066989..23067083 1062..1156 98 <- Minus
2L 23067145..23068144 62..1061 100 <- Minus
2L 23068200..23068239 22..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:33 Download gff for BS12819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22959721..22959815 1062..1156 98 <- Minus
arm_2L 22959877..22960876 62..1061 100 <- Minus
arm_2L 22960932..22960971 22..61 100   Minus

BS12819.pep Sequence

Translation from 16 to 1155

> BS12819.pep
MLQTQLAVKMAVKKPLMTPVVNLRSKRLADPEVTCFAPITTVVSKPLISG
KALPSILERINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDRE
DRDDKEKDRKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGL
VAKQGGATIAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDG
QGLGKSEQGMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGT
SPSHKAMPPPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDE
ELEPEVKDECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAV
VDLNGRFFGGRQVRAGFYNYDKFKCFQLH*

BS12819.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-PA 403 CG17540-PA 25..403 1..379 1960 100 Plus
Spf45-PC 363 CG17540-PC 1..363 17..379 1885 100 Plus
Spf45-PB 371 CG17540-PB 6..371 14..379 1819 95.9 Plus
pUf68-PJ 545 CG12085-PJ 444..538 284..373 192 47.9 Plus
pUf68-PI 545 CG12085-PI 444..538 284..373 192 47.9 Plus