Clone BS12822 Report

Search the DGRC for BS12822

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG7272-RA
Protein status:BS12822.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12822.3prime Sequence

717 bp (677 high quality bases) assembled on 2006-10-13

> BS12822.3prime
ATGGTCTAGAAAGCTTTTATTTGTCCTTCTTGCTGTCCTTGGGCTTCTCG
GCAGCCGGTTTGTTGGGATAAATAGCGAACATGGAGAGCTGAATGCCGCC
CAGGACCAGCAGCAAAAGGTTCTGCAGCACCATCACAGTATTCTTGATGG
AGATGGCATACAGCGTCCAGGAAAATGCCACCAGATTACCGGCAAAGATA
ATCGGGAACGGCATTCCCTCGGTGCTCTTCTTCTCAATGATTTTCGGCAG
ATGCAGCAGGGGAGAGCCCACCATCCAAACCAGGATGCCGGTGATCAGCA
TTCCCAGGCGGAACTCAATCTTGGCGGGATCCTCGAAGTTGGCATACGCG
GTGATGGCCAATAGGAACACCGAGGAATAGCCAATCTGCTTCCAGATCTT
GCTCCTGCTGGCGCTCGAGGCGTAGTAGTAAAATCCGAAGAGGAAGACGA
AGTTTATCACCAGGCCGATTAAATTCGTATTGATCATGGCAGCATCATTC
ATAATGTTGGCCAGCTTCAAGCTGAGAACGGTCAGCACCACTCCGAAGAG
AAATGGGCCCACCGGGTAGACGTCGCTGCTACCCTTCTTGCGGATGTCGT
TCATCAGAACCACTCCGGACAGAAATTGCAGGGTAGTTATGGTGCCGGCT
ACCTTGGCGATTAGTTCGCTGTGTGGCGCCAAGAGATCCCCCAGTGCCTC
CATGTCGACTGATAACT

BS12822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-PA 687 CG7272-RA 1..687 703..17 3435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-RA 1191 CG7272-RA 153..840 704..17 3440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15502837..15503242 533..128 2030 100 Minus
3L 28110227 3L 15501090..15501261 704..533 860 100 Minus
3L 28110227 3L 15503307..15503418 128..17 560 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:04:37 has no hits.

BS12822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:55 Download gff for BS12822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-PA 1..687 17..703 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:46 Download gff for BS12822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 153..840 17..704 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:55 Download gff for BS12822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 153..840 17..704 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:55 Download gff for BS12822.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15503308..15503418 17..127 100   Minus
3L 15501090..15501260 534..704 100 -> Minus
3L 15502837..15503242 128..533 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:46 Download gff for BS12822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15494190..15494360 534..704 100 -> Minus
arm_3L 15495937..15496342 128..533 100 -> Minus
arm_3L 15496408..15496518 17..127 100   Minus

BS12822.5prime Sequence

717 bp (717 high quality bases) assembled on 2006-10-13

> BS12822.5prime
GAAGTTATCAGTCGACATGGAGGCACTGGGGGATCTCTTGGCGCCACACA
GCGAACTAATCGCCAAGGTAGCCGGCACCATAACTACCCTGCAATTTCTG
TCCGGAGTGGTTCTGATGAACGACATCCGCAAGAAGGGTAGCAGCGACGT
CTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGACCGTTCTCAGCT
TGAAGCTGGCCAACATTATGAATGATGCTGCCATGATCAATACGAATTTA
ATCGGCCTGGTGATAAACTTCGTCTTCCTCTTCGGATTTTACTACTACGC
CTCGAGCGCCAGCAGGAGCAAGATCTGGAAGCAGATTGGCTATTCCTCGG
TGTTCCTATTGGCCATCACCGCGTATGCCAACTTCGAGGATCCCGCCAAG
ATTGAGTTCCGCCTGGGAATGCTGATCACCGGCATCCTGGTTTGGATGGT
GGGCTCTCCCCTGCTGCATCTGCCGAAAATCATTGAGAAGAAGAGCACCG
AGGGAATGCCGTTCCCGATTATCTTTGCCGGTAATCTGGTGGCATTTTCC
TGGACGCTGTATGCCATCTCCATCAAGAATACTGTGATGGTGCTGCAGAA
CCTTTTGCTGCTGGTCCTGGGCGGCATTCAGCTCTCCATGTTCGCTATTT
ATCCCAACAAACCGGCTGCCGAGAAGCCCAAGGACAGCAAGAAGGACAAA
TAAAAGCTTTCTAGACC

BS12822.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-PA 687 CG7272-RA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-RA 1191 CG7272-RA 153..840 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15502837..15503242 187..592 2030 100 Plus
3L 28110227 3L 15501090..15501261 16..187 860 100 Plus
3L 28110227 3L 15503307..15503418 592..703 560 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:16:26 has no hits.

BS12822.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:55 Download gff for BS12822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-PA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:45 Download gff for BS12822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 153..840 16..703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:05 Download gff for BS12822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 153..840 16..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:05 Download gff for BS12822.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15503308..15503418 593..703 100   Plus
3L 15501093..15501260 19..186 100 -> Plus
3L 15502837..15503242 187..592 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:45 Download gff for BS12822.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15494193..15494360 19..186 100 -> Plus
arm_3L 15495937..15496342 187..592 100 -> Plus
arm_3L 15496408..15496518 593..703 100   Plus

BS12822.complete Sequence

719 bp assembled on 2006-11-01

GenBank Submission: FJ637303

> BS12822.complete
GAAGTTATCAGTCGACATGGAGGCACTGGGGGATCTCTTGGCGCCACACA
GCGAACTAATCGCCAAGGTAGCCGGCACCATAACTACCCTGCAATTTCTG
TCCGGAGTGGTTCTGATGAACGACATCCGCAAGAAGGGTAGCAGCGACGT
CTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGACCGTTCTCAGCT
TGAAGCTGGCCAACATTATGAATGATGCTGCCATGATCAATACGAATTTA
ATCGGCCTGGTGATAAACTTCGTCTTCCTCTTCGGATTTTACTACTACGC
CTCGAGCGCCAGCAGGAGCAAGATCTGGAAGCAGATTGGCTATTCCTCGG
TGTTCCTATTGGCCATCACCGCGTATGCCAACTTCGAGGATCCCGCCAAG
ATTGAGTTCCGCCTGGGAATGCTGATCACCGGCATCCTGGTTTGGATGGT
GGGCTCTCCCCTGCTGCATCTGCCGAAAATCATTGAGAAGAAGAGCACCG
AGGGAATGCCGTTCCCGATTATCTTTGCCGGTAATCTGGTGGCATTTTCC
TGGACGCTGTATGCCATCTCCATCAAGAATACTGTGATGGTGCTGCAGAA
CCTTTTGCTGCTGGTCCTGGGCGGCATTCAGCTCTCCATGTTCGCTATTT
ATCCCAACAAACCGGCTGCCGAGAAGCCCAAGGACAGCAAGAAGGACAAA
TAAAAGCTTTCTAGACCAT

BS12822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-RA 687 CG7272-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-RA 1191 CG7272-RA 153..840 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15502837..15503242 187..592 2030 100 Plus
3L 28110227 3L 15501090..15501261 16..187 860 100 Plus
3L 28110227 3L 15503307..15503418 592..703 560 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:19:18 has no hits.

BS12822.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:53 Download gff for BS12822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:57:22 Download gff for BS12822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 151..838 16..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:34 Download gff for BS12822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 154..832 17..695 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:53 Download gff for BS12822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 151..838 16..703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:45 Download gff for BS12822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 154..832 17..695 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:45 Download gff for BS12822.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15501091..15501260 17..186 100 -> Plus
3L 15502837..15503242 187..592 100 -> Plus
3L 15503308..15503410 593..695 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:34 Download gff for BS12822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15494191..15494360 17..186 100 -> Plus
arm_3L 15495937..15496342 187..592 100 -> Plus
arm_3L 15496408..15496510 593..695 100   Plus

BS12822.pep Sequence

Translation from 16 to 702

> BS12822.pep
MEALGDLLAPHSELIAKVAGTITTLQFLSGVVLMNDIRKKGSSDVYPVGP
FLFGVVLTVLSLKLANIMNDAAMINTNLIGLVINFVFLFGFYYYASSASR
SKIWKQIGYSSVFLLAITAYANFEDPAKIEFRLGMLITGILVWMVGSPLL
HLPKIIEKKSTEGMPFPIIFAGNLVAFSWTLYAISIKNTVMVLQNLLLLV
LGGIQLSMFAIYPNKPAAEKPKDSKKDK*

BS12822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-PA 228 CG7272-PA 1..228 1..228 1144 100 Plus
slv-PC 226 CG8717-PC 6..208 11..213 212 27.2 Plus
slv-PB 226 CG8717-PB 6..208 11..213 212 27.2 Plus
slv-PA 226 CG8717-PA 6..208 11..213 212 27.2 Plus