Clone Sequence Records
BS12822.3prime Sequence
717 bp (677 high quality bases) assembled on 2006-10-13
> BS12822.3prime
ATGGTCTAGAAAGCTTTTATTTGTCCTTCTTGCTGTCCTTGGGCTTCTCG
GCAGCCGGTTTGTTGGGATAAATAGCGAACATGGAGAGCTGAATGCCGCC
CAGGACCAGCAGCAAAAGGTTCTGCAGCACCATCACAGTATTCTTGATGG
AGATGGCATACAGCGTCCAGGAAAATGCCACCAGATTACCGGCAAAGATA
ATCGGGAACGGCATTCCCTCGGTGCTCTTCTTCTCAATGATTTTCGGCAG
ATGCAGCAGGGGAGAGCCCACCATCCAAACCAGGATGCCGGTGATCAGCA
TTCCCAGGCGGAACTCAATCTTGGCGGGATCCTCGAAGTTGGCATACGCG
GTGATGGCCAATAGGAACACCGAGGAATAGCCAATCTGCTTCCAGATCTT
GCTCCTGCTGGCGCTCGAGGCGTAGTAGTAAAATCCGAAGAGGAAGACGA
AGTTTATCACCAGGCCGATTAAATTCGTATTGATCATGGCAGCATCATTC
ATAATGTTGGCCAGCTTCAAGCTGAGAACGGTCAGCACCACTCCGAAGAG
AAATGGGCCCACCGGGTAGACGTCGCTGCTACCCTTCTTGCGGATGTCGT
TCATCAGAACCACTCCGGACAGAAATTGCAGGGTAGTTATGGTGCCGGCT
ACCTTGGCGATTAGTTCGCTGTGTGGCGCCAAGAGATCCCCCAGTGCCTC
CATGTCGACTGATAACT
BS12822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-PA | 687 | CG7272-RA | 1..687 | 703..17 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-RA | 1191 | CG7272-RA | 153..840 | 704..17 | 3440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15502837..15503242 | 533..128 | 2030 | 100 | Minus |
3L | 28110227 | 3L | 15501090..15501261 | 704..533 | 860 | 100 | Minus |
3L | 28110227 | 3L | 15503307..15503418 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:04:37 has no hits.
BS12822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:55 Download gff for
BS12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-PA | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:46 Download gff for
BS12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 153..840 | 17..704 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:55 Download gff for
BS12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 153..840 | 17..704 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:55 Download gff for
BS12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15503308..15503418 | 17..127 | 100 | | Minus |
3L | 15501090..15501260 | 534..704 | 100 | -> | Minus |
3L | 15502837..15503242 | 128..533 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:46 Download gff for
BS12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15494190..15494360 | 534..704 | 100 | -> | Minus |
arm_3L | 15495937..15496342 | 128..533 | 100 | -> | Minus |
arm_3L | 15496408..15496518 | 17..127 | 100 | | Minus |
BS12822.5prime Sequence
717 bp (717 high quality bases) assembled on 2006-10-13
> BS12822.5prime
GAAGTTATCAGTCGACATGGAGGCACTGGGGGATCTCTTGGCGCCACACA
GCGAACTAATCGCCAAGGTAGCCGGCACCATAACTACCCTGCAATTTCTG
TCCGGAGTGGTTCTGATGAACGACATCCGCAAGAAGGGTAGCAGCGACGT
CTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGACCGTTCTCAGCT
TGAAGCTGGCCAACATTATGAATGATGCTGCCATGATCAATACGAATTTA
ATCGGCCTGGTGATAAACTTCGTCTTCCTCTTCGGATTTTACTACTACGC
CTCGAGCGCCAGCAGGAGCAAGATCTGGAAGCAGATTGGCTATTCCTCGG
TGTTCCTATTGGCCATCACCGCGTATGCCAACTTCGAGGATCCCGCCAAG
ATTGAGTTCCGCCTGGGAATGCTGATCACCGGCATCCTGGTTTGGATGGT
GGGCTCTCCCCTGCTGCATCTGCCGAAAATCATTGAGAAGAAGAGCACCG
AGGGAATGCCGTTCCCGATTATCTTTGCCGGTAATCTGGTGGCATTTTCC
TGGACGCTGTATGCCATCTCCATCAAGAATACTGTGATGGTGCTGCAGAA
CCTTTTGCTGCTGGTCCTGGGCGGCATTCAGCTCTCCATGTTCGCTATTT
ATCCCAACAAACCGGCTGCCGAGAAGCCCAAGGACAGCAAGAAGGACAAA
TAAAAGCTTTCTAGACC
BS12822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-PA | 687 | CG7272-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-RA | 1191 | CG7272-RA | 153..840 | 16..703 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15502837..15503242 | 187..592 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 15501090..15501261 | 16..187 | 860 | 100 | Plus |
3L | 28110227 | 3L | 15503307..15503418 | 592..703 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:16:26 has no hits.
BS12822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:55 Download gff for
BS12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:45 Download gff for
BS12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 153..840 | 16..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:05 Download gff for
BS12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 153..840 | 16..703 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:05 Download gff for
BS12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15503308..15503418 | 593..703 | 100 | | Plus |
3L | 15501093..15501260 | 19..186 | 100 | -> | Plus |
3L | 15502837..15503242 | 187..592 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:45 Download gff for
BS12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15494193..15494360 | 19..186 | 100 | -> | Plus |
arm_3L | 15495937..15496342 | 187..592 | 100 | -> | Plus |
arm_3L | 15496408..15496518 | 593..703 | 100 | | Plus |
BS12822.complete Sequence
719 bp assembled on 2006-11-01
GenBank Submission: FJ637303
> BS12822.complete
GAAGTTATCAGTCGACATGGAGGCACTGGGGGATCTCTTGGCGCCACACA
GCGAACTAATCGCCAAGGTAGCCGGCACCATAACTACCCTGCAATTTCTG
TCCGGAGTGGTTCTGATGAACGACATCCGCAAGAAGGGTAGCAGCGACGT
CTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGACCGTTCTCAGCT
TGAAGCTGGCCAACATTATGAATGATGCTGCCATGATCAATACGAATTTA
ATCGGCCTGGTGATAAACTTCGTCTTCCTCTTCGGATTTTACTACTACGC
CTCGAGCGCCAGCAGGAGCAAGATCTGGAAGCAGATTGGCTATTCCTCGG
TGTTCCTATTGGCCATCACCGCGTATGCCAACTTCGAGGATCCCGCCAAG
ATTGAGTTCCGCCTGGGAATGCTGATCACCGGCATCCTGGTTTGGATGGT
GGGCTCTCCCCTGCTGCATCTGCCGAAAATCATTGAGAAGAAGAGCACCG
AGGGAATGCCGTTCCCGATTATCTTTGCCGGTAATCTGGTGGCATTTTCC
TGGACGCTGTATGCCATCTCCATCAAGAATACTGTGATGGTGCTGCAGAA
CCTTTTGCTGCTGGTCCTGGGCGGCATTCAGCTCTCCATGTTCGCTATTT
ATCCCAACAAACCGGCTGCCGAGAAGCCCAAGGACAGCAAGAAGGACAAA
TAAAAGCTTTCTAGACCAT
BS12822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-RA | 687 | CG7272-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-RA | 1191 | CG7272-RA | 153..840 | 16..703 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15502837..15503242 | 187..592 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 15501090..15501261 | 16..187 | 860 | 100 | Plus |
3L | 28110227 | 3L | 15503307..15503418 | 592..703 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:19:18 has no hits.
BS12822.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:53 Download gff for
BS12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:57:22 Download gff for
BS12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 151..838 | 16..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:34 Download gff for
BS12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 154..832 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:53 Download gff for
BS12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 151..838 | 16..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:45 Download gff for
BS12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 154..832 | 17..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:45 Download gff for
BS12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15501091..15501260 | 17..186 | 100 | -> | Plus |
3L | 15502837..15503242 | 187..592 | 100 | -> | Plus |
3L | 15503308..15503410 | 593..695 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:34 Download gff for
BS12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15494191..15494360 | 17..186 | 100 | -> | Plus |
arm_3L | 15495937..15496342 | 187..592 | 100 | -> | Plus |
arm_3L | 15496408..15496510 | 593..695 | 100 | | Plus |
BS12822.pep Sequence
Translation from 16 to 702
> BS12822.pep
MEALGDLLAPHSELIAKVAGTITTLQFLSGVVLMNDIRKKGSSDVYPVGP
FLFGVVLTVLSLKLANIMNDAAMINTNLIGLVINFVFLFGFYYYASSASR
SKIWKQIGYSSVFLLAITAYANFEDPAKIEFRLGMLITGILVWMVGSPLL
HLPKIIEKKSTEGMPFPIIFAGNLVAFSWTLYAISIKNTVMVLQNLLLLV
LGGIQLSMFAIYPNKPAAEKPKDSKKDK*
BS12822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-PA | 228 | CG7272-PA | 1..228 | 1..228 | 1144 | 100 | Plus |
slv-PC | 226 | CG8717-PC | 6..208 | 11..213 | 212 | 27.2 | Plus |
slv-PB | 226 | CG8717-PB | 6..208 | 11..213 | 212 | 27.2 | Plus |
slv-PA | 226 | CG8717-PA | 6..208 | 11..213 | 212 | 27.2 | Plus |