Clone Sequence Records
BS12823.3prime Sequence
561 bp (561 high quality bases) assembled on 2006-10-13
> BS12823.3prime
ATGGTCTAGAAAGCTTTCAGGCGTGCAGAAGTCCATCGCTTTGCCCAACC
AATTTCCCAAGGAGAGTCTGGTAGAGTGGCGACTCCGTGGGTATTCCCTC
GCTCTGCAGAAACAGCAATGTTTCTCTGGCACACATGGCAAAACCCAGTG
CCTCCGCCTGACTCCTTTGGGCTGGCGTCGGTGGCGCAAACTGGGCCGCC
ACCTCGGCATCCTCGTCACTTTCCTCAACATCCTCCGCTTCAGCTCCGGC
AGCCGCATAGCCATCTCGATCGTTTAGATCCTGCTCAAAGGCATCCAGCT
CCGCTTGCAGCTCCATTATTTTTTGCAGCGCTTCCAGAAGGATTCGATTG
GGGGCATCTGGCGGGTTGGGGCAATTCTGCCCTGGCTCTTCTGCTGGTGG
AGTTAGAGGACGATGGCGTTTCTCCGGAACCGCTTCAGTCGGTTGCTGCT
CCTGTTGCTGTTCCTGCGGCTGGACACGTTGCTCCTGCGCCTGCTGCTGC
TCCTCCTGGCTGGCTCGCTTGCGCTTCATGATCAGTTTGCCCGACATGTC
GACTGATAACT
BS12823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6520-PA | 531 | CG6520-RA | 1..531 | 547..17 | 2655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| insb-RB | 1059 | CG6520-RB | 306..841 | 548..13 | 2665 | 99.8 | Minus |
| insb-RA | 854 | CG6520-RA | 101..636 | 548..13 | 2665 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17475432..17475967 | 13..548 | 2665 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:50:42 has no hits.
BS12823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:55 Download gff for
BS12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-PA | 1..531 | 17..547 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:34 Download gff for
BS12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 101..636 | 13..548 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:33 Download gff for
BS12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| insb-RA | 101..636 | 13..548 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:33 Download gff for
BS12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17475432..17475967 | 13..548 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:34 Download gff for
BS12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13362937..13363472 | 13..548 | 99 | | Plus |
BS12823.5prime Sequence
561 bp (561 high quality bases) assembled on 2006-10-13
> BS12823.5prime
GAAGTTATCAGTCGACATGTCGGGCAAACTGATCATGAAGCGCAAGCGAG
CCAGCCAGGAGGAGCAGCAGCAGGCGCAGGAGCAACGTGTCCAGCCGCAG
GAACAGCAACAGGAGCAGCAACCGACTGAAGCGGTTCCGGAGAAACGCCA
TCGTCCTCTAACTCCACCAGCAGAAGAGCCAGGGCAGAATTGCCCCAACC
CGCCAGATGCCCCCAATCGAATCCTTCTGGAAGCGCTGCAAAAAATAATG
GAGCTGCAAGCGGAGCTGGATGCCTTTGAGCAGGATCTAAACGATCGAGA
TGGCTATGCGGCTGCCGGAGCTGAAGCGGAGGATGTTGAGGAAAGTGACG
AGGATGCCGAGGTGGCGGCCCAGTTTGCGCCACCGACGCCAGCCCAAAGG
AGTCAGGCGGAGGCACTGGGTTTTGCCATGTGTGCCAGAGAAACATTGCT
GTTTCTGCAGAGCGAGGGAATACCCACGGAGTCGCCACTCTACCAGACTC
TCCTTGGGAAATTGGTTGGGCAAAGCGATGGACTTCTGCACGCCTGAAAG
CTTTCTAGACC
BS12823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6520-PA | 531 | CG6520-RA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| insb-RB | 1059 | CG6520-RB | 306..841 | 16..551 | 2665 | 99.8 | Plus |
| insb-RA | 854 | CG6520-RA | 101..636 | 16..551 | 2665 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17475432..17475967 | 551..16 | 2665 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:16:33 has no hits.
BS12823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:55 Download gff for
BS12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-PA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:46 Download gff for
BS12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 101..636 | 16..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:25 Download gff for
BS12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| insb-RA | 101..636 | 16..551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:25 Download gff for
BS12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17475432..17475967 | 16..551 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:46 Download gff for
BS12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13362937..13363472 | 16..551 | 99 | | Minus |
BS12823.complete Sequence
563 bp assembled on 2006-11-01
GenBank Submission: FJ637304
> BS12823.complete
GAAGTTATCAGTCGACATGTCGGGCAAACTGATCATGAAGCGCAAGCGAG
CCAGCCAGGAGGAGCAGCAGCAGGCGCAGGAGCAACGTGTCCAGCCGCAG
GAACAGCAACAGGAGCAGCAACCGACTGAAGCGGTTCCGGAGAAACGCCA
TCGTCCTCTAACTCCACCAGCAGAAGAGCCAGGGCAGAATTGCCCCAACC
CGCCAGATGCCCCCAATCGAATCCTTCTGGAAGCGCTGCAAAAAATAATG
GAGCTGCAAGCGGAGCTGGATGCCTTTGAGCAGGATCTAAACGATCGAGA
TGGCTATGCGGCTGCCGGAGCTGAAGCGGAGGATGTTGAGGAAAGTGACG
AGGATGCCGAGGTGGCGGCCCAGTTTGCGCCACCGACGCCAGCCCAAAGG
AGTCAGGCGGAGGCACTGGGTTTTGCCATGTGTGCCAGAGAAACATTGCT
GTTTCTGCAGAGCGAGGGAATACCCACGGAGTCGCCACTCTACCAGACTC
TCCTTGGGAAATTGGTTGGGCAAAGCGATGGACTTCTGCACGCCTGAAAG
CTTTCTAGACCAT
BS12823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| insb-RB | 531 | CG6520-PB | 1..531 | 17..547 | 2655 | 100 | Plus |
| insb-RA | 531 | CG6520-PA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| insb-RB | 1059 | CG6520-RB | 306..841 | 16..551 | 2665 | 99.8 | Plus |
| insb-RA | 854 | CG6520-RA | 101..636 | 16..551 | 2665 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17475432..17475967 | 551..16 | 2665 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:53:13 has no hits.
BS12823.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:05 Download gff for
BS12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:57 Download gff for
BS12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 95..630 | 16..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:28 Download gff for
BS12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 102..631 | 17..546 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:05 Download gff for
BS12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 95..630 | 16..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:55 Download gff for
BS12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| insb-RA | 102..631 | 17..546 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:55 Download gff for
BS12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17475437..17475966 | 17..546 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:28 Download gff for
BS12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13362942..13363471 | 17..546 | 100 | | Minus |
BS12823.pep Sequence
Translation from 16 to 546
> BS12823.pep
MSGKLIMKRKRASQEEQQQAQEQRVQPQEQQQEQQPTEAVPEKRHRPLTP
PAEEPGQNCPNPPDAPNRILLEALQKIMELQAELDAFEQDLNDRDGYAAA
GAEAEDVEESDEDAEVAAQFAPPTPAQRSQAEALGFAMCARETLLFLQSE
GIPTESPLYQTLLGKLVGQSDGLLHA*
BS12823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| insb-PB | 176 | CG6520-PB | 1..176 | 1..176 | 899 | 100 | Plus |
| insb-PA | 176 | CG6520-PA | 1..176 | 1..176 | 899 | 100 | Plus |
