Clone BS12825 Report

Search the DGRC for BS12825

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG12975-RA
Protein status:BS12825.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12825.5prime Sequence

405 bp (405 high quality bases) assembled on 2006-10-13

> BS12825.5prime
GAAGTTATCAGTCGACATGAAACTCAGCACATACAACTTCTTGACCTCCG
TGGCCATCAAGGGCGTCAAAGTGGGATTTCCCCTGAAACTGACGATTAAC
AAAAAGGAAGTGGTGGAGAGCGAATTTAATCCAACTTTTGTGGAGAGAAT
CCTTCCCAAGCTGGACTGGTCAGCGGTCTATGGAGCTGCTCAGGTGGCGG
AACTCACAGAAGACATTCCTGCCGTTCAGCCTGAAAACATTGTGGAGAAT
GAACTGCTTTTGCAGAAGCTTCACCATCTGCTCTTCGAGATCGACGTGCT
CGAGGGTCAACTGGAGTGCCCGGAGACAGGTCGTGTGTTTCCCATCAGCG
ATGGTATACCAAACATGCTCCTTAACGAGGACGAGGTCTAGAAGCTTTCT
AGACC

BS12825.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-PA 375 CG12975-RA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-RA 627 CG12975-RA 119..494 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21216128..21216324 392..196 985 100 Minus
3L 28110227 3L 21216476..21216579 197..94 520 100 Minus
3L 28110227 3L 21216644..21216721 94..17 390 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:31:24 has no hits.

BS12825.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:57 Download gff for BS12825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-PA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:31 Download gff for BS12825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..496 17..397 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:04 Download gff for BS12825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..496 17..397 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:04 Download gff for BS12825.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21216126..21216323 197..397 98 <- Minus
3L 21216477..21216578 95..196 100 <- Minus
3L 21216644..21216721 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:31 Download gff for BS12825.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21209226..21209423 197..397 98 <- Minus
arm_3L 21209577..21209678 95..196 100 <- Minus
arm_3L 21209744..21209821 17..94 100   Minus

BS12825.3prime Sequence

405 bp (405 high quality bases) assembled on 2006-10-13

> BS12825.3prime
ATGGTCTAGAAAGCTTCTAGACCTCGTCCTCGTTAAGGAGCATGTTTGGT
ATACCATCGCTGATGGGAAACACACGACCTGTCTCCGGGCACTCCAGTTG
ACCCTCGAGCACGTCGATCTCGAAGAGCAGATGGTGAAGCTTCTGCAAAA
GCAGTTCATTCTCCACAATGTTTTCAGGCTGAACGGCAGGAATGTCTTCT
GTGAGTTCCGCCACCTGAGCAGCTCCATAGACCGCTGACCAGTCCAGCTT
GGGAAGGATTCTCTCCACAAAAGTTGGATTAAATTCGCTCTCCACCACTT
CCTTTTTGTTAATCGTCAGTTTCAGGGGAAATCCCACTTTGACGCCCTTG
ATGGCCACGGAGGTCAAGAAGTTGTATGTGCTGAGTTTCATGTCGACTGA
TAACT

BS12825.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-PA 375 CG12975-RA 1..375 391..17 1875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-RA 627 CG12975-RA 119..494 391..16 1880 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21216128..21216324 16..212 985 100 Plus
3L 28110227 3L 21216476..21216579 211..314 520 100 Plus
3L 28110227 3L 21216644..21216721 314..391 390 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:05:45 has no hits.

BS12825.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:57 Download gff for BS12825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-PA 1..375 17..391 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:57 Download gff for BS12825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..496 11..391 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:02 Download gff for BS12825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..496 11..391 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:02 Download gff for BS12825.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21216126..21216323 11..211 98 <- Plus
3L 21216477..21216578 212..313 100 <- Plus
3L 21216644..21216721 314..391 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:57 Download gff for BS12825.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21209226..21209423 11..211 98 <- Plus
arm_3L 21209577..21209678 212..313 100 <- Plus
arm_3L 21209744..21209821 314..391 100   Plus

BS12825.complete Sequence

407 bp assembled on 2006-11-01

GenBank Submission: FJ637306

> BS12825.complete
GAAGTTATCAGTCGACATGAAACTCAGCACATACAACTTCTTGACCTCCG
TGGCCATCAAGGGCGTCAAAGTGGGATTTCCCCTGAAACTGACGATTAAC
AAAAAGGAAGTGGTGGAGAGCGAATTTAATCCAACTTTTGTGGAGAGAAT
CCTTCCCAAGCTGGACTGGTCAGCGGTCTATGGAGCTGCTCAGGTGGCGG
AACTCACAGAAGACATTCCTGCCGTTCAGCCTGAAAACATTGTGGAGAAT
GAACTGCTTTTGCAGAAGCTTCACCATCTGCTCTTCGAGATCGACGTGCT
CGAGGGTCAACTGGAGTGCCCGGAGACAGGTCGTGTGTTTCCCATCAGCG
ATGGTATACCAAACATGCTCCTTAACGAGGACGAGGTCTAGAAGCTTTCT
AGACCAT

BS12825.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-RA 375 CG12975-PA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-RA 627 CG12975-RA 119..494 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21216128..21216324 392..196 985 100 Minus
3L 28110227 3L 21216476..21216579 197..94 520 100 Minus
3L 28110227 3L 21216644..21216721 94..17 390 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:57:12 has no hits.

BS12825.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:51 Download gff for BS12825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:02 Download gff for BS12825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 104..481 17..397 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:29 Download gff for BS12825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..493 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:51 Download gff for BS12825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 104..481 17..397 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:42 Download gff for BS12825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..493 17..391 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:42 Download gff for BS12825.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21216129..21216323 197..391 100 <- Minus
3L 21216477..21216578 95..196 100 <- Minus
3L 21216644..21216721 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:29 Download gff for BS12825.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21209229..21209423 197..391 100 <- Minus
arm_3L 21209577..21209678 95..196 100 <- Minus
arm_3L 21209744..21209821 17..94 100   Minus

BS12825.pep Sequence

Translation from 16 to 390

> BS12825.pep
MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLD
WSAVYGAAQVAELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLE
CPETGRVFPISDGIPNMLLNEDEV*

BS12825.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-PA 124 CG12975-PA 1..124 1..124 631 100 Plus