Clone Sequence Records
BS12825.5prime Sequence
405 bp (405 high quality bases) assembled on 2006-10-13
> BS12825.5prime
GAAGTTATCAGTCGACATGAAACTCAGCACATACAACTTCTTGACCTCCG
TGGCCATCAAGGGCGTCAAAGTGGGATTTCCCCTGAAACTGACGATTAAC
AAAAAGGAAGTGGTGGAGAGCGAATTTAATCCAACTTTTGTGGAGAGAAT
CCTTCCCAAGCTGGACTGGTCAGCGGTCTATGGAGCTGCTCAGGTGGCGG
AACTCACAGAAGACATTCCTGCCGTTCAGCCTGAAAACATTGTGGAGAAT
GAACTGCTTTTGCAGAAGCTTCACCATCTGCTCTTCGAGATCGACGTGCT
CGAGGGTCAACTGGAGTGCCCGGAGACAGGTCGTGTGTTTCCCATCAGCG
ATGGTATACCAAACATGCTCCTTAACGAGGACGAGGTCTAGAAGCTTTCT
AGACC
BS12825.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-PA | 375 | CG12975-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-RA | 627 | CG12975-RA | 119..494 | 17..392 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21216128..21216324 | 392..196 | 985 | 100 | Minus |
3L | 28110227 | 3L | 21216476..21216579 | 197..94 | 520 | 100 | Minus |
3L | 28110227 | 3L | 21216644..21216721 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:31:24 has no hits.
BS12825.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:57 Download gff for
BS12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-PA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:31 Download gff for
BS12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..496 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:04 Download gff for
BS12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..496 | 17..397 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:04 Download gff for
BS12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21216126..21216323 | 197..397 | 98 | <- | Minus |
3L | 21216477..21216578 | 95..196 | 100 | <- | Minus |
3L | 21216644..21216721 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:31 Download gff for
BS12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21209226..21209423 | 197..397 | 98 | <- | Minus |
arm_3L | 21209577..21209678 | 95..196 | 100 | <- | Minus |
arm_3L | 21209744..21209821 | 17..94 | 100 | | Minus |
BS12825.3prime Sequence
405 bp (405 high quality bases) assembled on 2006-10-13
> BS12825.3prime
ATGGTCTAGAAAGCTTCTAGACCTCGTCCTCGTTAAGGAGCATGTTTGGT
ATACCATCGCTGATGGGAAACACACGACCTGTCTCCGGGCACTCCAGTTG
ACCCTCGAGCACGTCGATCTCGAAGAGCAGATGGTGAAGCTTCTGCAAAA
GCAGTTCATTCTCCACAATGTTTTCAGGCTGAACGGCAGGAATGTCTTCT
GTGAGTTCCGCCACCTGAGCAGCTCCATAGACCGCTGACCAGTCCAGCTT
GGGAAGGATTCTCTCCACAAAAGTTGGATTAAATTCGCTCTCCACCACTT
CCTTTTTGTTAATCGTCAGTTTCAGGGGAAATCCCACTTTGACGCCCTTG
ATGGCCACGGAGGTCAAGAAGTTGTATGTGCTGAGTTTCATGTCGACTGA
TAACT
BS12825.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-PA | 375 | CG12975-RA | 1..375 | 391..17 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-RA | 627 | CG12975-RA | 119..494 | 391..16 | 1880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21216128..21216324 | 16..212 | 985 | 100 | Plus |
3L | 28110227 | 3L | 21216476..21216579 | 211..314 | 520 | 100 | Plus |
3L | 28110227 | 3L | 21216644..21216721 | 314..391 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:05:45 has no hits.
BS12825.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:57 Download gff for
BS12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-PA | 1..375 | 17..391 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:57 Download gff for
BS12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..496 | 11..391 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:02 Download gff for
BS12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..496 | 11..391 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:02 Download gff for
BS12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21216126..21216323 | 11..211 | 98 | <- | Plus |
3L | 21216477..21216578 | 212..313 | 100 | <- | Plus |
3L | 21216644..21216721 | 314..391 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:57 Download gff for
BS12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21209226..21209423 | 11..211 | 98 | <- | Plus |
arm_3L | 21209577..21209678 | 212..313 | 100 | <- | Plus |
arm_3L | 21209744..21209821 | 314..391 | 100 | | Plus |
BS12825.complete Sequence
407 bp assembled on 2006-11-01
GenBank Submission: FJ637306
> BS12825.complete
GAAGTTATCAGTCGACATGAAACTCAGCACATACAACTTCTTGACCTCCG
TGGCCATCAAGGGCGTCAAAGTGGGATTTCCCCTGAAACTGACGATTAAC
AAAAAGGAAGTGGTGGAGAGCGAATTTAATCCAACTTTTGTGGAGAGAAT
CCTTCCCAAGCTGGACTGGTCAGCGGTCTATGGAGCTGCTCAGGTGGCGG
AACTCACAGAAGACATTCCTGCCGTTCAGCCTGAAAACATTGTGGAGAAT
GAACTGCTTTTGCAGAAGCTTCACCATCTGCTCTTCGAGATCGACGTGCT
CGAGGGTCAACTGGAGTGCCCGGAGACAGGTCGTGTGTTTCCCATCAGCG
ATGGTATACCAAACATGCTCCTTAACGAGGACGAGGTCTAGAAGCTTTCT
AGACCAT
BS12825.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-RA | 375 | CG12975-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-RA | 627 | CG12975-RA | 119..494 | 17..392 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21216128..21216324 | 392..196 | 985 | 100 | Minus |
3L | 28110227 | 3L | 21216476..21216579 | 197..94 | 520 | 100 | Minus |
3L | 28110227 | 3L | 21216644..21216721 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:57:12 has no hits.
BS12825.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:51 Download gff for
BS12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:02 Download gff for
BS12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 104..481 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:29 Download gff for
BS12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..493 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:51 Download gff for
BS12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 104..481 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:42 Download gff for
BS12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..493 | 17..391 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:42 Download gff for
BS12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21216129..21216323 | 197..391 | 100 | <- | Minus |
3L | 21216477..21216578 | 95..196 | 100 | <- | Minus |
3L | 21216644..21216721 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:29 Download gff for
BS12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21209229..21209423 | 197..391 | 100 | <- | Minus |
arm_3L | 21209577..21209678 | 95..196 | 100 | <- | Minus |
arm_3L | 21209744..21209821 | 17..94 | 100 | | Minus |
BS12825.pep Sequence
Translation from 16 to 390
> BS12825.pep
MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLD
WSAVYGAAQVAELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLE
CPETGRVFPISDGIPNMLLNEDEV*
BS12825.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-PA | 124 | CG12975-PA | 1..124 | 1..124 | 631 | 100 | Plus |