Clone Sequence Records
BS12826.3prime Sequence
648 bp (648 high quality bases) assembled on 2006-10-13
> BS12826.3prime
ATGGTCTAGAAAGCTTTCAATAGTTCCCGGAGCAGATGCCGTTGTGAGCA
TAATGGTGCTGTTTGTGCCGGCAGGCACACAAGTTAGGAGCGAAGCAGTA
AGCTCGTGGTCCGCAGTTGTGATCACAGATTGGCATGCATTGCTGTCCAT
GAAGCAGGCTGTCCCTTAGCTCGTATCCCTGGGCACAGATGCACCGTCCG
TCGGAGGAGCAGTTGCCATGTGTGCAGCGCCCAAGGCAGGGGTCCAGCAG
ACGGGGAGCCCTGTGGCGGCACTTTTGGGAGAGGGGATCAAAGTAGTAGT
GCCTGTCCTCACGGCACACACAGAGATCTGGTGCGGCGCAGTAGCCACCT
GCCGCCACGCACCCGGGGAGGCACTCTGCGGCACACACCAAACCATCCGG
ATTACCCGCCATATACTGATCGGCACAGGGACAGGATCCGTCCTCGAAGC
ACACTCCATTCAGGCAGACGATGTTGCAGCGCCTTACGCACTGGCGGGTG
TTGACCACCAGCATTTCGTAGTCTGAGCAAAGCTGTGAAGGCTCGTTGAT
CTCCCAGTAGCCGTAGTCGTAGTAATAGTGACCCTCTACTACTGCCCACA
GCAGCAACTGTAGGAAGACCATCCGGCGCGACATGTCGACTGATAACT
BS12826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15861-PA | 618 | CG15861-RA | 1..618 | 634..17 | 3065 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15861-RB | 1563 | CG15861-RB | 671..1292 | 638..17 | 3080 | 99.7 | Minus |
| CG15861-RA | 1067 | CG15861-RA | 175..796 | 638..17 | 3080 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24944018..24944426 | 230..638 | 2015 | 99.5 | Plus |
| 2R | 25286936 | 2R | 24943823..24943934 | 120..231 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 24943663..24943765 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:32:02 has no hits.
BS12826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:58 Download gff for
BS12826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-PA | 1..618 | 17..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:29 Download gff for
BS12826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 169..799 | 12..644 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:48 Download gff for
BS12826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 169..799 | 12..644 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:48 Download gff for
BS12826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24943660..24943765 | 12..119 | 97 | <- | Plus |
| 2R | 24943823..24943933 | 120..230 | 100 | <- | Plus |
| 2R | 24944019..24944427 | 231..640 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:29 Download gff for
BS12826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20831183..20831288 | 12..119 | 97 | <- | Plus |
| arm_2R | 20831346..20831456 | 120..230 | 100 | <- | Plus |
| arm_2R | 20831542..20831950 | 231..640 | 99 | <- | Plus |
BS12826.5prime Sequence
648 bp (648 high quality bases) assembled on 2006-10-13
> BS12826.5prime
GAAGTTATCAGTCGACATGTCGCGCCGGATGGTCTTCCTACAGTTGCTGC
TGTGGGCAGTAGTAGAGGGTCACTATTACTACGACTACGGCTACTGGGAG
ATCAACGAGCCTTCACAGCTTTGCTCAGACTACGAAATGCTGGTGGTCAA
CACCCGCCAGTGCGTAAGGCGCTGCAACATCGTCTGCCTGAATGGAGTGT
GCTTCGAGGACGGATCCTGTCCCTGTGCCGATCAGTATATGGCGGGTAAT
CCGGATGGTTTGGTGTGTGCCGCAGAGTGCCTCCCCGGGTGCGTGGCGGC
AGGTGGCTACTGCGCCGCACCAGATCTCTGTGTGTGCCGTGAGGACAGGC
ACTACTACTTTGATCCCCTCTCCCAAAAGTGCCGCCACAGGGCTCCCCGT
CTGCTGGACCCCTGCCTTGGGCGCTGCACACATGGCAACTGCTCCTCCGA
CGGACGGTGCATCTGTGCCCAGGGATACGAGCTAAGGGACAGCCTGCTTC
ATGGACAGCAATGCATGCCAATCTGTGATCACAACTGCGGACCACGAGCT
TACTGCTTCGCTCCTAACTTGTGTGCCTGCCGGCACAAACAGCACCATTA
TGCTCACAACGGCATCTGCTCCGGGAACTATTGAAAGCTTTCTAGACC
BS12826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15861-PA | 618 | CG15861-RA | 1..618 | 17..634 | 3065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15861-RB | 1563 | CG15861-RB | 671..1292 | 13..634 | 3080 | 99.7 | Plus |
| CG15861-RA | 1067 | CG15861-RA | 175..796 | 13..634 | 3080 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24944018..24944426 | 421..13 | 2015 | 99.5 | Minus |
| 2R | 25286936 | 2R | 24943823..24943934 | 531..420 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 24943663..24943765 | 634..532 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:59:00 has no hits.
BS12826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:58 Download gff for
BS12826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-PA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:39 Download gff for
BS12826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 169..799 | 7..639 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:09 Download gff for
BS12826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 169..799 | 7..639 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:09 Download gff for
BS12826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24943660..24943765 | 532..639 | 97 | <- | Minus |
| 2R | 24943823..24943933 | 421..531 | 100 | <- | Minus |
| 2R | 24944019..24944427 | 11..420 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:39 Download gff for
BS12826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20831183..20831288 | 532..639 | 97 | <- | Minus |
| arm_2R | 20831346..20831456 | 421..531 | 100 | <- | Minus |
| arm_2R | 20831542..20831950 | 11..420 | 99 | <- | Minus |
BS12826.complete Sequence
650 bp assembled on 2006-11-01
GenBank Submission: FJ637307
> BS12826.complete
GAAGTTATCAGTCGACATGTCGCGCCGGATGGTCTTCCTACAGTTGCTGC
TGTGGGCAGTAGTAGAGGGTCACTATTACTACGACTACGGCTACTGGGAG
ATCAACGAGCCTTCACAGCTTTGCTCAGACTACGAAATGCTGGTGGTCAA
CACCCGCCAGTGCGTAAGGCGCTGCAACATCGTCTGCCTGAATGGAGTGT
GCTTCGAGGACGGATCCTGTCCCTGTGCCGATCAGTATATGGCGGGTAAT
CCGGATGGTTTGGTGTGTGCCGCAGAGTGCCTCCCCGGGTGCGTGGCGGC
AGGTGGCTACTGCGCCGCACCAGATCTCTGTGTGTGCCGTGAGGACAGGC
ACTACTACTTTGATCCCCTCTCCCAAAAGTGCCGCCACAGGGCTCCCCGT
CTGCTGGACCCCTGCCTTGGGCGCTGCACACATGGCAACTGCTCCTCCGA
CGGACGGTGCATCTGTGCCCAGGGATACGAGCTAAGGGACAGCCTGCTTC
ATGGACAGCAATGCATGCCAATCTGTGATCACAACTGCGGACCACGAGCT
TACTGCTTCGCTCCTAACTTGTGTGCCTGCCGGCACAAACAGCACCATTA
TGCTCACAACGGCATCTGCTCCGGGAACTATTGAAAGCTTTCTAGACCAT
BS12826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15861-RB | 618 | CG15861-PB | 1..618 | 17..634 | 3075 | 99.8 | Plus |
| CG15861-RA | 618 | CG15861-PA | 1..618 | 17..634 | 3075 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15861-RB | 1563 | CG15861-RB | 671..1292 | 13..634 | 3080 | 99.7 | Plus |
| CG15861-RA | 1067 | CG15861-RA | 175..796 | 13..634 | 3080 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24944018..24944426 | 421..13 | 2015 | 99.5 | Minus |
| 2R | 25286936 | 2R | 24943823..24943934 | 531..420 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 24943663..24943765 | 634..532 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:37:46 has no hits.
BS12826.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:52 Download gff for
BS12826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:03 Download gff for
BS12826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 166..796 | 7..639 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:35 Download gff for
BS12826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 179..795 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:52 Download gff for
BS12826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 166..796 | 7..639 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:11 Download gff for
BS12826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 179..795 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:11 Download gff for
BS12826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24943664..24943765 | 532..633 | 100 | <- | Minus |
| 2R | 24943823..24943933 | 421..531 | 100 | <- | Minus |
| 2R | 24944019..24944422 | 17..420 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:35 Download gff for
BS12826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20831187..20831288 | 532..633 | 100 | <- | Minus |
| arm_2R | 20831346..20831456 | 421..531 | 100 | <- | Minus |
| arm_2R | 20831542..20831945 | 17..420 | 99 | | Minus |
BS12826.pep Sequence
Translation from 16 to 633
> BS12826.pep
MSRRMVFLQLLLWAVVEGHYYYDYGYWEINEPSQLCSDYEMLVVNTRQCV
RRCNIVCLNGVCFEDGSCPCADQYMAGNPDGLVCAAECLPGCVAAGGYCA
APDLCVCREDRHYYFDPLSQKCRHRAPRLLDPCLGRCTHGNCSSDGRCIC
AQGYELRDSLLHGQQCMPICDHNCGPRAYCFAPNLCACRHKQHHYAHNGI
CSGNY*
BS12826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15861-PB | 205 | CG15861-PB | 1..205 | 1..205 | 1206 | 100 | Plus |
| CG15861-PA | 205 | CG15861-PA | 1..205 | 1..205 | 1206 | 100 | Plus |
| eater-PC | 1074 | CG6124-PC | 110..260 | 35..198 | 217 | 31.7 | Plus |
| NimC2-PA | 648 | CG18146-PA | 219..356 | 36..188 | 207 | 33.5 | Plus |
| NimC2-PC | 701 | CG18146-PC | 272..409 | 36..188 | 207 | 33.5 | Plus |
| eater-PC | 1074 | CG6124-PC | 315..465 | 36..203 | 206 | 33.1 | Plus |
| eater-PC | 1074 | CG6124-PC | 42..181 | 36..188 | 201 | 27.7 | Plus |
| eater-PC | 1074 | CG6124-PC | 645..795 | 36..203 | 199 | 32.6 | Plus |
| eater-PC | 1074 | CG6124-PC | 579..729 | 36..203 | 198 | 32.6 | Plus |
| eater-PC | 1074 | CG6124-PC | 381..531 | 36..203 | 197 | 32.6 | Plus |
| eater-PC | 1074 | CG6124-PC | 262..399 | 49..203 | 191 | 32.3 | Plus |
| NimC2-PA | 648 | CG18146-PA | 402..531 | 46..188 | 189 | 32.2 | Plus |
| eater-PC | 1074 | CG6124-PC | 513..663 | 36..203 | 188 | 32 | Plus |
| NimC2-PA | 648 | CG18146-PA | 18..154 | 43..192 | 188 | 31.6 | Plus |
| NimC2-PA | 648 | CG18146-PA | 113..254 | 35..188 | 188 | 27.3 | Plus |
| eater-PC | 1074 | CG6124-PC | 767..909 | 25..188 | 184 | 29.9 | Plus |
| eater-PC | 1074 | CG6124-PC | 843..989 | 36..188 | 184 | 34.4 | Plus |
| NimC2-PA | 648 | CG18146-PA | 162..288 | 49..188 | 183 | 31.9 | Plus |
| NimC2-PA | 648 | CG18146-PA | 335..461 | 49..188 | 175 | 30.6 | Plus |
| eater-PC | 1074 | CG6124-PC | 346..480 | 36..188 | 170 | 29.2 | Plus |
| NimC2-PA | 648 | CG18146-PA | 58..197 | 49..203 | 168 | 30.6 | Plus |
| NimC2-PA | 648 | CG18146-PA | 430..566 | 39..187 | 161 | 31.2 | Plus |
