Clone BS12827 Report

Search the DGRC for BS12827

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:27
Vector:pDNR-Dual
Associated Gene/Transcriptlbm-RA
Protein status:BS12827.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12827.3prime Sequence

657 bp (657 high quality bases) assembled on 2006-10-13

> BS12827.3prime
ATGGTCTAGAAAGCTTCTAGAACTCCATCCGTCGCTGCTTGTTCTTAAAA
CTAATGGCCAGAAACACGGCCAAGGCGAAGCAGATTAACTCGAAGGCCAC
TAGCACCCAGGACACTATGATGAAGCGCAGCTTGTCGCTTTCGTAGAAGC
TCTGCACCTTTTCGATGCACCCGTCCAGATAGAGGTGGTCGGGGGTCTGC
TGCAGATCCGCGTAGCAGCTGGGCGGGATCAGCAGGCTGAGGTGGATATA
GTCCTGGGCGCTGCTCTGGCCGCAGCACTCGTGCTTCTGCTGCAAGGAAT
CCATGTTGTTCGCCTGCCAGGCCACCTCCACCATGTCCCGGCCGCTCTTC
ACGTCGAACTCGTGGAGGAACAGGCAGGTGCTCACGATCTGCAGGATGGC
CAAGATCAGCAGGAAGACAGCACTCGTTGCAGTCAGCACCACCGATTCCC
GGATGGCCGCGAAGATGCCCAGCAGAGCAAAGACCAGGATGAGCGAGCAC
GCGATGTAAGCGGCTATTACGAATTCCTCCGTCTCCGTGTCCGCATTGTA
AGCTATCCAGCCGATGGCCCCAGCAGCAAGAAACCCTAAAACGGCATTCA
GAACGATGGAGGCGATCTTCACGCTGGTCGTGGCGCAACCCATGTCGACT
GATAACT

BS12827.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2374-PA 627 lbm-RA 1..627 643..17 3135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
lbm-RB 923 CG2374-RB 80..706 643..17 3135 100 Minus
lbm-RA 1029 CG2374-RA 186..812 643..17 3135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7051277..7051613 425..89 1685 100 Minus
2R 25286936 2R 7051062..7051221 584..425 800 100 Minus
2R 25286936 2R 7051674..7051747 90..17 370 100 Minus
2R 25286936 2R 7050044..7050103 643..584 300 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:59:12 has no hits.

BS12827.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:59 Download gff for BS12827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2374-PA 1..627 17..643 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:42 Download gff for BS12827.3prime
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 179..816 12..651 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:11 Download gff for BS12827.3prime
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 179..816 12..651 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:11 Download gff for BS12827.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7050037..7050103 584..651 94 -> Minus
2R 7051063..7051221 425..583 100 -> Minus
2R 7051278..7051613 89..424 100 -> Minus
2R 7051676..7051751 12..88 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:42 Download gff for BS12827.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2937542..2937608 584..651 94 -> Minus
arm_2R 2938568..2938726 425..583 100 -> Minus
arm_2R 2938783..2939118 89..424 100 -> Minus
arm_2R 2939181..2939256 12..88 96   Minus

BS12827.5prime Sequence

657 bp (657 high quality bases) assembled on 2006-10-13

> BS12827.5prime
GAAGTTATCAGTCGACATGGGTTGCGCCACGACCAGCGTGAAGATCGCCT
CCATCGTTCTGAATGCCGTTTTAGGGTTTCTTGCTGCTGGGGCCATCGGC
TGGATAGCTTACAATGCGGACACGGAGACGGAGGAATTCGTAATAGCCGC
TTACATCGCGTGCTCGCTCATCCTGGTCTTTGCTCTGCTGGGCATCTTCG
CGGCCATCCGGGAATCGGTGGTGCTGACTGCAACGAGTGCTGTCTTCCTG
CTGATCTTGGCCATCCTGCAGATCGTGAGCACCTGCCTGTTCCTCCACGA
GTTCGACGTGAAGAGCGGCCGGGACATGGTGGAGGTGGCCTGGCAGGCGA
ACAACATGGATTCCTTGCAGCAGAAGCACGAGTGCTGCGGCCAGAGCAGC
GCCCAGGACTATATCCACCTCAGCCTGCTGATCCCGCCCAGCTGCTACGC
GGATCTGCAGCAGACCCCCGACCACCTCTATCTGGACGGGTGCATCGAAA
AGGTGCAGAGCTTCTACGAAAGCGACAAGCTGCGCTTCATCATAGTGTCC
TGGGTGCTAGTGGCCTTCGAGTTAATCTGCTTCGCCTTGGCCGTGTTTCT
GGCCATTAGTTTTAAGAACAAGCAGCGACGGATGGAGTTCTAGAAGCTTT
CTAGACC

BS12827.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2374-PA 627 lbm-RA 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
lbm-RB 923 CG2374-RB 80..706 17..643 3135 100 Plus
lbm-RA 1029 CG2374-RA 186..812 17..643 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7051277..7051613 235..571 1685 100 Plus
2R 25286936 2R 7051062..7051221 76..235 800 100 Plus
2R 25286936 2R 7051674..7051747 570..643 370 100 Plus
2R 25286936 2R 7050044..7050103 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:32:59 has no hits.

BS12827.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:59 Download gff for BS12827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2374-PA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:32 Download gff for BS12827.5prime
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 179..816 9..648 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:53 Download gff for BS12827.5prime
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 179..816 9..648 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:53 Download gff for BS12827.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7050037..7050103 9..76 94 -> Plus
2R 7051063..7051221 77..235 100 -> Plus
2R 7051278..7051613 236..571 100 -> Plus
2R 7051676..7051751 572..648 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:32 Download gff for BS12827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2937542..2937608 9..76 94 -> Plus
arm_2R 2938568..2938726 77..235 100 -> Plus
arm_2R 2938783..2939118 236..571 100 -> Plus
arm_2R 2939181..2939256 572..648 96   Plus

BS12827.complete Sequence

659 bp assembled on 2006-11-01

GenBank Submission: FJ637308

> BS12827.complete
GAAGTTATCAGTCGACATGGGTTGCGCCACGACCAGCGTGAAGATCGCCT
CCATCGTTCTGAATGCCGTTTTAGGGTTTCTTGCTGCTGGGGCCATCGGC
TGGATAGCTTACAATGCGGACACGGAGACGGAGGAATTCGTAATAGCCGC
TTACATCGCGTGCTCGCTCATCCTGGTCTTTGCTCTGCTGGGCATCTTCG
CGGCCATCCGGGAATCGGTGGTGCTGACTGCAACGAGTGCTGTCTTCCTG
CTGATCTTGGCCATCCTGCAGATCGTGAGCACCTGCCTGTTCCTCCACGA
GTTCGACGTGAAGAGCGGCCGGGACATGGTGGAGGTGGCCTGGCAGGCGA
ACAACATGGATTCCTTGCAGCAGAAGCACGAGTGCTGCGGCCAGAGCAGC
GCCCAGGACTATATCCACCTCAGCCTGCTGATCCCGCCCAGCTGCTACGC
GGATCTGCAGCAGACCCCCGACCACCTCTATCTGGACGGGTGCATCGAAA
AGGTGCAGAGCTTCTACGAAAGCGACAAGCTGCGCTTCATCATAGTGTCC
TGGGTGCTAGTGGCCTTCGAGTTAATCTGCTTCGCCTTGGCCGTGTTTCT
GGCCATTAGTTTTAAGAACAAGCAGCGACGGATGGAGTTCTAGAAGCTTT
CTAGACCAT

BS12827.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
lbm-RB 627 CG2374-PB 1..627 17..643 3135 100 Plus
lbm-RA 627 CG2374-PA 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
lbm-RB 923 CG2374-RB 80..706 17..643 3135 100 Plus
lbm-RA 1029 CG2374-RA 186..812 17..643 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7051277..7051613 235..571 1685 100 Plus
2R 25286936 2R 7051062..7051221 76..235 800 100 Plus
2R 25286936 2R 7051674..7051747 570..643 370 100 Plus
2R 25286936 2R 7050044..7050103 17..76 300 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:40:30 has no hits.

BS12827.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:53 Download gff for BS12827.complete
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:05 Download gff for BS12827.complete
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 174..811 9..648 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:12 Download gff for BS12827.complete
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 186..812 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:54 Download gff for BS12827.complete
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 174..811 9..648 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:31 Download gff for BS12827.complete
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 186..812 17..643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:31 Download gff for BS12827.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7050044..7050103 17..76 100 -> Plus
2R 7051063..7051221 77..235 100 -> Plus
2R 7051278..7051613 236..571 100 -> Plus
2R 7051676..7051747 572..643 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:12 Download gff for BS12827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2938568..2938726 77..235 100 -> Plus
arm_2R 2937549..2937608 17..76 100 -> Plus
arm_2R 2938783..2939118 236..571 100 -> Plus
arm_2R 2939181..2939252 572..643 100   Plus

BS12827.pep Sequence

Translation from 16 to 642

> BS12827.pep
MGCATTSVKIASIVLNAVLGFLAAGAIGWIAYNADTETEEFVIAAYIACS
LILVFALLGIFAAIRESVVLTATSAVFLLILAILQIVSTCLFLHEFDVKS
GRDMVEVAWQANNMDSLQQKHECCGQSSAQDYIHLSLLIPPSCYADLQQT
PDHLYLDGCIEKVQSFYESDKLRFIIVSWVLVAFELICFALAVFLAISFK
NKQRRMEF*

BS12827.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
lbm-PB 208 CG2374-PB 1..208 1..208 1053 100 Plus
lbm-PA 208 CG2374-PA 1..208 1..208 1053 100 Plus
Tsp42El-PA 217 CG12840-PA 1..217 1..208 257 32 Plus
Tsp42En-PB 218 CG12839-PB 1..218 1..208 243 31.7 Plus
Tsp42En-PA 218 CG12839-PA 1..218 1..208 243 31.7 Plus