Clone Sequence Records
BS12827.3prime Sequence
657 bp (657 high quality bases) assembled on 2006-10-13
> BS12827.3prime
ATGGTCTAGAAAGCTTCTAGAACTCCATCCGTCGCTGCTTGTTCTTAAAA
CTAATGGCCAGAAACACGGCCAAGGCGAAGCAGATTAACTCGAAGGCCAC
TAGCACCCAGGACACTATGATGAAGCGCAGCTTGTCGCTTTCGTAGAAGC
TCTGCACCTTTTCGATGCACCCGTCCAGATAGAGGTGGTCGGGGGTCTGC
TGCAGATCCGCGTAGCAGCTGGGCGGGATCAGCAGGCTGAGGTGGATATA
GTCCTGGGCGCTGCTCTGGCCGCAGCACTCGTGCTTCTGCTGCAAGGAAT
CCATGTTGTTCGCCTGCCAGGCCACCTCCACCATGTCCCGGCCGCTCTTC
ACGTCGAACTCGTGGAGGAACAGGCAGGTGCTCACGATCTGCAGGATGGC
CAAGATCAGCAGGAAGACAGCACTCGTTGCAGTCAGCACCACCGATTCCC
GGATGGCCGCGAAGATGCCCAGCAGAGCAAAGACCAGGATGAGCGAGCAC
GCGATGTAAGCGGCTATTACGAATTCCTCCGTCTCCGTGTCCGCATTGTA
AGCTATCCAGCCGATGGCCCCAGCAGCAAGAAACCCTAAAACGGCATTCA
GAACGATGGAGGCGATCTTCACGCTGGTCGTGGCGCAACCCATGTCGACT
GATAACT
BS12827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2374-PA | 627 | lbm-RA | 1..627 | 643..17 | 3135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbm-RB | 923 | CG2374-RB | 80..706 | 643..17 | 3135 | 100 | Minus |
lbm-RA | 1029 | CG2374-RA | 186..812 | 643..17 | 3135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7051277..7051613 | 425..89 | 1685 | 100 | Minus |
2R | 25286936 | 2R | 7051062..7051221 | 584..425 | 800 | 100 | Minus |
2R | 25286936 | 2R | 7051674..7051747 | 90..17 | 370 | 100 | Minus |
2R | 25286936 | 2R | 7050044..7050103 | 643..584 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:59:12 has no hits.
BS12827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:59 Download gff for
BS12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2374-PA | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:42 Download gff for
BS12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 179..816 | 12..651 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:11 Download gff for
BS12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 179..816 | 12..651 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:11 Download gff for
BS12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7050037..7050103 | 584..651 | 94 | -> | Minus |
2R | 7051063..7051221 | 425..583 | 100 | -> | Minus |
2R | 7051278..7051613 | 89..424 | 100 | -> | Minus |
2R | 7051676..7051751 | 12..88 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:42 Download gff for
BS12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2937542..2937608 | 584..651 | 94 | -> | Minus |
arm_2R | 2938568..2938726 | 425..583 | 100 | -> | Minus |
arm_2R | 2938783..2939118 | 89..424 | 100 | -> | Minus |
arm_2R | 2939181..2939256 | 12..88 | 96 | | Minus |
BS12827.5prime Sequence
657 bp (657 high quality bases) assembled on 2006-10-13
> BS12827.5prime
GAAGTTATCAGTCGACATGGGTTGCGCCACGACCAGCGTGAAGATCGCCT
CCATCGTTCTGAATGCCGTTTTAGGGTTTCTTGCTGCTGGGGCCATCGGC
TGGATAGCTTACAATGCGGACACGGAGACGGAGGAATTCGTAATAGCCGC
TTACATCGCGTGCTCGCTCATCCTGGTCTTTGCTCTGCTGGGCATCTTCG
CGGCCATCCGGGAATCGGTGGTGCTGACTGCAACGAGTGCTGTCTTCCTG
CTGATCTTGGCCATCCTGCAGATCGTGAGCACCTGCCTGTTCCTCCACGA
GTTCGACGTGAAGAGCGGCCGGGACATGGTGGAGGTGGCCTGGCAGGCGA
ACAACATGGATTCCTTGCAGCAGAAGCACGAGTGCTGCGGCCAGAGCAGC
GCCCAGGACTATATCCACCTCAGCCTGCTGATCCCGCCCAGCTGCTACGC
GGATCTGCAGCAGACCCCCGACCACCTCTATCTGGACGGGTGCATCGAAA
AGGTGCAGAGCTTCTACGAAAGCGACAAGCTGCGCTTCATCATAGTGTCC
TGGGTGCTAGTGGCCTTCGAGTTAATCTGCTTCGCCTTGGCCGTGTTTCT
GGCCATTAGTTTTAAGAACAAGCAGCGACGGATGGAGTTCTAGAAGCTTT
CTAGACC
BS12827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2374-PA | 627 | lbm-RA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbm-RB | 923 | CG2374-RB | 80..706 | 17..643 | 3135 | 100 | Plus |
lbm-RA | 1029 | CG2374-RA | 186..812 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7051277..7051613 | 235..571 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 7051062..7051221 | 76..235 | 800 | 100 | Plus |
2R | 25286936 | 2R | 7051674..7051747 | 570..643 | 370 | 100 | Plus |
2R | 25286936 | 2R | 7050044..7050103 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:32:59 has no hits.
BS12827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:59 Download gff for
BS12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2374-PA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:32 Download gff for
BS12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 179..816 | 9..648 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:53 Download gff for
BS12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 179..816 | 9..648 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:53 Download gff for
BS12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7050037..7050103 | 9..76 | 94 | -> | Plus |
2R | 7051063..7051221 | 77..235 | 100 | -> | Plus |
2R | 7051278..7051613 | 236..571 | 100 | -> | Plus |
2R | 7051676..7051751 | 572..648 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:32 Download gff for
BS12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2937542..2937608 | 9..76 | 94 | -> | Plus |
arm_2R | 2938568..2938726 | 77..235 | 100 | -> | Plus |
arm_2R | 2938783..2939118 | 236..571 | 100 | -> | Plus |
arm_2R | 2939181..2939256 | 572..648 | 96 | | Plus |
BS12827.complete Sequence
659 bp assembled on 2006-11-01
GenBank Submission: FJ637308
> BS12827.complete
GAAGTTATCAGTCGACATGGGTTGCGCCACGACCAGCGTGAAGATCGCCT
CCATCGTTCTGAATGCCGTTTTAGGGTTTCTTGCTGCTGGGGCCATCGGC
TGGATAGCTTACAATGCGGACACGGAGACGGAGGAATTCGTAATAGCCGC
TTACATCGCGTGCTCGCTCATCCTGGTCTTTGCTCTGCTGGGCATCTTCG
CGGCCATCCGGGAATCGGTGGTGCTGACTGCAACGAGTGCTGTCTTCCTG
CTGATCTTGGCCATCCTGCAGATCGTGAGCACCTGCCTGTTCCTCCACGA
GTTCGACGTGAAGAGCGGCCGGGACATGGTGGAGGTGGCCTGGCAGGCGA
ACAACATGGATTCCTTGCAGCAGAAGCACGAGTGCTGCGGCCAGAGCAGC
GCCCAGGACTATATCCACCTCAGCCTGCTGATCCCGCCCAGCTGCTACGC
GGATCTGCAGCAGACCCCCGACCACCTCTATCTGGACGGGTGCATCGAAA
AGGTGCAGAGCTTCTACGAAAGCGACAAGCTGCGCTTCATCATAGTGTCC
TGGGTGCTAGTGGCCTTCGAGTTAATCTGCTTCGCCTTGGCCGTGTTTCT
GGCCATTAGTTTTAAGAACAAGCAGCGACGGATGGAGTTCTAGAAGCTTT
CTAGACCAT
BS12827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbm-RB | 627 | CG2374-PB | 1..627 | 17..643 | 3135 | 100 | Plus |
lbm-RA | 627 | CG2374-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbm-RB | 923 | CG2374-RB | 80..706 | 17..643 | 3135 | 100 | Plus |
lbm-RA | 1029 | CG2374-RA | 186..812 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7051277..7051613 | 235..571 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 7051062..7051221 | 76..235 | 800 | 100 | Plus |
2R | 25286936 | 2R | 7051674..7051747 | 570..643 | 370 | 100 | Plus |
2R | 25286936 | 2R | 7050044..7050103 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:40:30 has no hits.
BS12827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:53 Download gff for
BS12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:05 Download gff for
BS12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 174..811 | 9..648 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:12 Download gff for
BS12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 186..812 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:54 Download gff for
BS12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 174..811 | 9..648 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:31 Download gff for
BS12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 186..812 | 17..643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:31 Download gff for
BS12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7050044..7050103 | 17..76 | 100 | -> | Plus |
2R | 7051063..7051221 | 77..235 | 100 | -> | Plus |
2R | 7051278..7051613 | 236..571 | 100 | -> | Plus |
2R | 7051676..7051747 | 572..643 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:12 Download gff for
BS12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2938568..2938726 | 77..235 | 100 | -> | Plus |
arm_2R | 2937549..2937608 | 17..76 | 100 | -> | Plus |
arm_2R | 2938783..2939118 | 236..571 | 100 | -> | Plus |
arm_2R | 2939181..2939252 | 572..643 | 100 | | Plus |
BS12827.pep Sequence
Translation from 16 to 642
> BS12827.pep
MGCATTSVKIASIVLNAVLGFLAAGAIGWIAYNADTETEEFVIAAYIACS
LILVFALLGIFAAIRESVVLTATSAVFLLILAILQIVSTCLFLHEFDVKS
GRDMVEVAWQANNMDSLQQKHECCGQSSAQDYIHLSLLIPPSCYADLQQT
PDHLYLDGCIEKVQSFYESDKLRFIIVSWVLVAFELICFALAVFLAISFK
NKQRRMEF*
BS12827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbm-PB | 208 | CG2374-PB | 1..208 | 1..208 | 1053 | 100 | Plus |
lbm-PA | 208 | CG2374-PA | 1..208 | 1..208 | 1053 | 100 | Plus |
Tsp42El-PA | 217 | CG12840-PA | 1..217 | 1..208 | 257 | 32 | Plus |
Tsp42En-PB | 218 | CG12839-PB | 1..218 | 1..208 | 243 | 31.7 | Plus |
Tsp42En-PA | 218 | CG12839-PA | 1..218 | 1..208 | 243 | 31.7 | Plus |