Clone BS12829 Report

Search the DGRC for BS12829

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG17359-RA
Protein status:BS12829.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12829.3prime Sequence

767 bp (683 high quality bases) assembled on 2006-10-13

> BS12829.3prime
ATGGTCTAGAAAGCTTCTATTTAAACTTATTTCTTTTTGTTTCTTGGCTG
CTCGTCCGTCGCTTCCCTCGCGTGTGTGCTGACATGTGTTTTTGTAGGCC
GTTTAGTTGCTTGAAGCTTTGCTGACATTTGGAACATTTGAACGGCTGTT
CGCCAGTATGAGTCCGGGTGTGGACTTGCAGTTGCCCAACTTGCCGGAAG
CGCTTGGGGCAGTTCGGACAACCGAAGGGACGCTCGCCGGTGTGACAACG
TGTGTGGCTCTGCAGGTTGCCCTTCTGGGCAAAGGATCGCGGACATAGGG
AGCACTTGTAGGGTCGCTCGCCAGTATGTATGCGCATGTGAATCTCTAGG
TTTTGTTTTTGGGTGAACGACTGTGTGCAGAGCTTGCACCGATATGGTCC
GGGAACCCTTTTCGGTTTGCCCCGTTTTGAGGCGTTCCAGATTTTATCAT
CATCTTCGTGTTCAAGCTCACTATCCGGGCTCCATGAGTCATTGTCCGAG
TAGGATCTCGCCCTCCTCTTGGACTTATTGTGTGGCGTCTTTGCTGGAGA
ATAACTTTGCGCGAGCTTATGCTCATTGTTGTCTGGAAGAGGAGAAGATA
TTGGCTTCGGCTCTGGAGGCATGTACTTAACCTGCACAAGCTCAACTAAA
AGAGGTTCGGATGTCTCCGGCGTTTTACCAGCTTCCCTTACCGAGACCGG
CATCTGTGGTTCTATGTTATCCCCTATATTCAGGCAATACTCTATATCGT
CCAGCTCCTTCATCATC

BS12829.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-PA 1020 CG17359-RA 270..1020 767..17 3730 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-RA 1352 CG17359-RA 339..1089 767..17 3740 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13998163..13998913 17..767 3740 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 21:12:05 has no hits.

BS12829.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:00 Download gff for BS12829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-PA 270..1020 17..767 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:34 Download gff for BS12829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 339..1098 10..767 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:23 Download gff for BS12829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 339..1098 10..767 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:23 Download gff for BS12829.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13998154..13998913 10..767 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:34 Download gff for BS12829.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13991254..13992013 10..767 99   Plus

BS12829.5prime Sequence

791 bp (790 high quality bases) assembled on 2006-10-13

> BS12829.5prime
GAAGTTATCAGTCGACATGGACATTTCGCAAATGTGCCGCGTTTGCAGGG
ACGAATCCGACTGCCTGTTGGATATATATACAGAGCCATATGCCTCCTCC
AATCGGGTCCAGGAGCAGGAGCCGGTCTTGGCCACAATGCTGAGGGAATG
CAGCGGATGCAGCGTGCATAAGGAGGACGGAATGCCGCAGTTCATCTGCG
TGGAGTGTGCGGAGGCCGTAAGAAATGCCTATCGGCTAAGACGGCAATGC
CGAAAGAGCCATCAGTACTTTGAACAGCTGCGTCTGATGATGAAGGAGCT
GGACGATATAGAGTATTGCCTGAATATAGGGGATAACATAGAACCACAGA
TGCCGGTCTCGGTAATGGAAGCTGGTAAAACGCCGGAGACATCCGAACCT
CTTTTAGTTGAGCTTGTGCAGGTTAAGTACATGCCTCCAGAGCCGAAGCC
AATATCTTCTCCTCTTCCAGACAACAATGAGCATAAGCTCGCGCAAAGTT
ATTCTCCAGCAAAGACGCCACACAATAAGTCCAAGAGGAGGGCGAGATCC
TACTCGGACAATGACTCATGGAGCCCGGATAGTGAGCTTGAACACGAAGA
TGATGATAAAATCTGGAACGCCTCAAAACGGGGCAAACCGAANAGGGTTC
CCGGACCATATCGGTGCAAGCTCTGCACACAGTCGTTCACCCAAAAACAA
AACCTAGAGATTCACATGCGCATACATACTGGCGAGCGACCCTACAAGTG
CTCCCTATGTCCGCGATCCTTTGCCCAGAAAGGCAACCTGC

BS12829.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-PA 1020 CG17359-RA 1..775 17..791 3831 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-RA 1352 CG17359-RA 70..844 17..791 3849 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13998408..13999182 791..17 3849 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 16:33:27 has no hits.

BS12829.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:00 Download gff for BS12829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-PA 1..775 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:35 Download gff for BS12829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 61..844 8..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:01 Download gff for BS12829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 61..844 8..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:01 Download gff for BS12829.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13998408..13999191 8..791 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:35 Download gff for BS12829.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13991508..13992291 8..791 99   Minus

BS12829.complete Sequence

1052 bp assembled on 2006-11-01

GenBank Submission: FJ637309

> BS12829.complete
GAAGTTATCAGTCGACATGGACATTTCGCAAATGTGCCGCGTTTGCAGGG
ACGAATCCGACTGCCTGTTGGATATATATACAGAGCCATATGCCTCCTCC
AATCGGGTCCAGGAGCAGGAGCCGGTCTTGGCCACAATGCTGAGGGAATG
CAGCGGATGCAGCGTGCATAAGGAGGACGGAATGCCGCAGTTCATCTGCG
TGGAGTGTGCGGAGGCCGTAAGAAATGCCTATCGGCTAAGACGGCAATGC
CGAAAGAGCCATCAGTACTTTGAACAGCTGCGTCTGATGATGAAGGAGCT
GGACGATATAGAGTATTGCCTGAATATAGGGGATAACATAGAACCACAGA
TGCCGGTCTCGGTAATGGAAGCTGGTAAAACGCCGGAGACATCCGAACCT
CTTTTAGTTGAGCTTGTGCAGGTTAAGTACATGCCTCCAGAGCCGAAGCC
AATATCTTCTCCTCTTCCAGACAACAATGAGCATAAGCTCGCGCAAAGTT
ATTCTCCAGCAAAGACGCCACACAATAAGTCCAAGAGGAGGGCGAGATCC
TACTCGGACAATGACTCATGGAGCCCGGATAGTGAGCTTGAACACGAAGA
TGATGATAAAATCTGGAACGCCTCAAAACGGGGCAAACCGAAAAGGGTTC
CCGGACCATATCGGTGCAAGCTCTGCACACAGTCGTTCACCCAAAAACAA
AACCTAGAGATTCACATGCGCATACATACTGGCGAGCGACCCTACAAGTG
CTCCCTATGTCCGCGATCCTTTGCCCAGAAGGGCAACCTGCAGAGCCACA
CACGTTGTCACACCGGCGAGCGTCCCTTCGGTTGTCCGAACTGCCCCAAG
CGCTTCCGGCAAGTTGGGCAACTGCAAGTCCACACCCGGACTCATACTGG
CGAACAGCCGTTCAAATGTTCCAAATGTCAGCAAAGCTTCAAGCAACTAA
ACGGCCTACAAAAACACATGTCAGCACACACGCGAGGGAAGCGACGGACG
AGCAGCCAAGAAACAAAAAGAAATAAGTTTAAATAGAAGCTTTCTAGACC
AT

BS12829.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-RA 1020 CG17359-PA 1..1020 17..1036 5100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-RA 1352 CG17359-RA 70..1089 17..1036 5100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13998163..13999182 1036..17 5100 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:18:22 has no hits.

BS12829.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:55 Download gff for BS12829.complete
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 1..1020 17..1036 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:06 Download gff for BS12829.complete
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 56..1093 8..1043 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:59 Download gff for BS12829.complete
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 70..1083 17..1030 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:55 Download gff for BS12829.complete
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 56..1093 8..1043 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:21 Download gff for BS12829.complete
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 70..1083 17..1030 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:21 Download gff for BS12829.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13998169..13999182 17..1030 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:59 Download gff for BS12829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13991269..13992282 17..1030 100   Minus

BS12829.pep Sequence

Translation from 16 to 1035

> BS12829.pep
MDISQMCRVCRDESDCLLDIYTEPYASSNRVQEQEPVLATMLRECSGCSV
HKEDGMPQFICVECAEAVRNAYRLRRQCRKSHQYFEQLRLMMKELDDIEY
CLNIGDNIEPQMPVSVMEAGKTPETSEPLLVELVQVKYMPPEPKPISSPL
PDNNEHKLAQSYSPAKTPHNKSKRRARSYSDNDSWSPDSELEHEDDDKIW
NASKRGKPKRVPGPYRCKLCTQSFTQKQNLEIHMRIHTGERPYKCSLCPR
SFAQKGNLQSHTRCHTGERPFGCPNCPKRFRQVGQLQVHTRTHTGEQPFK
CSKCQQSFKQLNGLQKHMSAHTRGKRRTSSQETKRNKFK*

BS12829.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-PA 339 CG17359-PA 1..339 1..339 1853 100 Plus
CG44002-PA 345 CG44002-PA 5..320 7..335 379 26.9 Plus
Meics-PB 571 CG8474-PB 21..411 7..339 352 24.4 Plus
Meics-PA 583 CG8474-PA 21..423 7..339 344 24.4 Plus
gl-PB 557 CG7672-PB 392..547 167..325 320 37.1 Plus
Meics-PB 571 CG8474-PB 343..454 214..325 293 42.9 Plus
Meics-PA 583 CG8474-PA 355..466 214..325 293 42.9 Plus
Meics-PB 571 CG8474-PB 371..484 214..327 279 40.4 Plus
Meics-PA 583 CG8474-PA 383..496 214..327 279 40.4 Plus
Meics-PB 571 CG8474-PB 316..423 215..322 268 42.6 Plus
Meics-PA 583 CG8474-PA 328..435 215..322 268 42.6 Plus
Meics-PB 571 CG8474-PB 427..571 214..325 176 28.1 Plus
Meics-PA 583 CG8474-PA 439..583 214..325 176 28.1 Plus