Clone Sequence Records
BS12829.3prime Sequence
767 bp (683 high quality bases) assembled on 2006-10-13
> BS12829.3prime
ATGGTCTAGAAAGCTTCTATTTAAACTTATTTCTTTTTGTTTCTTGGCTG
CTCGTCCGTCGCTTCCCTCGCGTGTGTGCTGACATGTGTTTTTGTAGGCC
GTTTAGTTGCTTGAAGCTTTGCTGACATTTGGAACATTTGAACGGCTGTT
CGCCAGTATGAGTCCGGGTGTGGACTTGCAGTTGCCCAACTTGCCGGAAG
CGCTTGGGGCAGTTCGGACAACCGAAGGGACGCTCGCCGGTGTGACAACG
TGTGTGGCTCTGCAGGTTGCCCTTCTGGGCAAAGGATCGCGGACATAGGG
AGCACTTGTAGGGTCGCTCGCCAGTATGTATGCGCATGTGAATCTCTAGG
TTTTGTTTTTGGGTGAACGACTGTGTGCAGAGCTTGCACCGATATGGTCC
GGGAACCCTTTTCGGTTTGCCCCGTTTTGAGGCGTTCCAGATTTTATCAT
CATCTTCGTGTTCAAGCTCACTATCCGGGCTCCATGAGTCATTGTCCGAG
TAGGATCTCGCCCTCCTCTTGGACTTATTGTGTGGCGTCTTTGCTGGAGA
ATAACTTTGCGCGAGCTTATGCTCATTGTTGTCTGGAAGAGGAGAAGATA
TTGGCTTCGGCTCTGGAGGCATGTACTTAACCTGCACAAGCTCAACTAAA
AGAGGTTCGGATGTCTCCGGCGTTTTACCAGCTTCCCTTACCGAGACCGG
CATCTGTGGTTCTATGTTATCCCCTATATTCAGGCAATACTCTATATCGT
CCAGCTCCTTCATCATC
BS12829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-PA | 1020 | CG17359-RA | 270..1020 | 767..17 | 3730 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-RA | 1352 | CG17359-RA | 339..1089 | 767..17 | 3740 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13998163..13998913 | 17..767 | 3740 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:12:05 has no hits.
BS12829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:00 Download gff for
BS12829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-PA | 270..1020 | 17..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:34 Download gff for
BS12829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 339..1098 | 10..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:23 Download gff for
BS12829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 339..1098 | 10..767 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:23 Download gff for
BS12829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13998154..13998913 | 10..767 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:34 Download gff for
BS12829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13991254..13992013 | 10..767 | 99 | | Plus |
BS12829.5prime Sequence
791 bp (790 high quality bases) assembled on 2006-10-13
> BS12829.5prime
GAAGTTATCAGTCGACATGGACATTTCGCAAATGTGCCGCGTTTGCAGGG
ACGAATCCGACTGCCTGTTGGATATATATACAGAGCCATATGCCTCCTCC
AATCGGGTCCAGGAGCAGGAGCCGGTCTTGGCCACAATGCTGAGGGAATG
CAGCGGATGCAGCGTGCATAAGGAGGACGGAATGCCGCAGTTCATCTGCG
TGGAGTGTGCGGAGGCCGTAAGAAATGCCTATCGGCTAAGACGGCAATGC
CGAAAGAGCCATCAGTACTTTGAACAGCTGCGTCTGATGATGAAGGAGCT
GGACGATATAGAGTATTGCCTGAATATAGGGGATAACATAGAACCACAGA
TGCCGGTCTCGGTAATGGAAGCTGGTAAAACGCCGGAGACATCCGAACCT
CTTTTAGTTGAGCTTGTGCAGGTTAAGTACATGCCTCCAGAGCCGAAGCC
AATATCTTCTCCTCTTCCAGACAACAATGAGCATAAGCTCGCGCAAAGTT
ATTCTCCAGCAAAGACGCCACACAATAAGTCCAAGAGGAGGGCGAGATCC
TACTCGGACAATGACTCATGGAGCCCGGATAGTGAGCTTGAACACGAAGA
TGATGATAAAATCTGGAACGCCTCAAAACGGGGCAAACCGAANAGGGTTC
CCGGACCATATCGGTGCAAGCTCTGCACACAGTCGTTCACCCAAAAACAA
AACCTAGAGATTCACATGCGCATACATACTGGCGAGCGACCCTACAAGTG
CTCCCTATGTCCGCGATCCTTTGCCCAGAAAGGCAACCTGC
BS12829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-PA | 1020 | CG17359-RA | 1..775 | 17..791 | 3831 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-RA | 1352 | CG17359-RA | 70..844 | 17..791 | 3849 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13998408..13999182 | 791..17 | 3849 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:33:27 has no hits.
BS12829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:00 Download gff for
BS12829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-PA | 1..775 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:35 Download gff for
BS12829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 61..844 | 8..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:01 Download gff for
BS12829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 61..844 | 8..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:01 Download gff for
BS12829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13998408..13999191 | 8..791 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:35 Download gff for
BS12829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13991508..13992291 | 8..791 | 99 | | Minus |
BS12829.complete Sequence
1052 bp assembled on 2006-11-01
GenBank Submission: FJ637309
> BS12829.complete
GAAGTTATCAGTCGACATGGACATTTCGCAAATGTGCCGCGTTTGCAGGG
ACGAATCCGACTGCCTGTTGGATATATATACAGAGCCATATGCCTCCTCC
AATCGGGTCCAGGAGCAGGAGCCGGTCTTGGCCACAATGCTGAGGGAATG
CAGCGGATGCAGCGTGCATAAGGAGGACGGAATGCCGCAGTTCATCTGCG
TGGAGTGTGCGGAGGCCGTAAGAAATGCCTATCGGCTAAGACGGCAATGC
CGAAAGAGCCATCAGTACTTTGAACAGCTGCGTCTGATGATGAAGGAGCT
GGACGATATAGAGTATTGCCTGAATATAGGGGATAACATAGAACCACAGA
TGCCGGTCTCGGTAATGGAAGCTGGTAAAACGCCGGAGACATCCGAACCT
CTTTTAGTTGAGCTTGTGCAGGTTAAGTACATGCCTCCAGAGCCGAAGCC
AATATCTTCTCCTCTTCCAGACAACAATGAGCATAAGCTCGCGCAAAGTT
ATTCTCCAGCAAAGACGCCACACAATAAGTCCAAGAGGAGGGCGAGATCC
TACTCGGACAATGACTCATGGAGCCCGGATAGTGAGCTTGAACACGAAGA
TGATGATAAAATCTGGAACGCCTCAAAACGGGGCAAACCGAAAAGGGTTC
CCGGACCATATCGGTGCAAGCTCTGCACACAGTCGTTCACCCAAAAACAA
AACCTAGAGATTCACATGCGCATACATACTGGCGAGCGACCCTACAAGTG
CTCCCTATGTCCGCGATCCTTTGCCCAGAAGGGCAACCTGCAGAGCCACA
CACGTTGTCACACCGGCGAGCGTCCCTTCGGTTGTCCGAACTGCCCCAAG
CGCTTCCGGCAAGTTGGGCAACTGCAAGTCCACACCCGGACTCATACTGG
CGAACAGCCGTTCAAATGTTCCAAATGTCAGCAAAGCTTCAAGCAACTAA
ACGGCCTACAAAAACACATGTCAGCACACACGCGAGGGAAGCGACGGACG
AGCAGCCAAGAAACAAAAAGAAATAAGTTTAAATAGAAGCTTTCTAGACC
AT
BS12829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-RA | 1020 | CG17359-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-RA | 1352 | CG17359-RA | 70..1089 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13998163..13999182 | 1036..17 | 5100 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:18:22 has no hits.
BS12829.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:55 Download gff for
BS12829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 1..1020 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:06 Download gff for
BS12829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 56..1093 | 8..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:59 Download gff for
BS12829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 70..1083 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:55 Download gff for
BS12829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 56..1093 | 8..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:21 Download gff for
BS12829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 70..1083 | 17..1030 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:21 Download gff for
BS12829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13998169..13999182 | 17..1030 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:59 Download gff for
BS12829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13991269..13992282 | 17..1030 | 100 | | Minus |
BS12829.pep Sequence
Translation from 16 to 1035
> BS12829.pep
MDISQMCRVCRDESDCLLDIYTEPYASSNRVQEQEPVLATMLRECSGCSV
HKEDGMPQFICVECAEAVRNAYRLRRQCRKSHQYFEQLRLMMKELDDIEY
CLNIGDNIEPQMPVSVMEAGKTPETSEPLLVELVQVKYMPPEPKPISSPL
PDNNEHKLAQSYSPAKTPHNKSKRRARSYSDNDSWSPDSELEHEDDDKIW
NASKRGKPKRVPGPYRCKLCTQSFTQKQNLEIHMRIHTGERPYKCSLCPR
SFAQKGNLQSHTRCHTGERPFGCPNCPKRFRQVGQLQVHTRTHTGEQPFK
CSKCQQSFKQLNGLQKHMSAHTRGKRRTSSQETKRNKFK*
BS12829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-PA | 339 | CG17359-PA | 1..339 | 1..339 | 1853 | 100 | Plus |
CG44002-PA | 345 | CG44002-PA | 5..320 | 7..335 | 379 | 26.9 | Plus |
Meics-PB | 571 | CG8474-PB | 21..411 | 7..339 | 352 | 24.4 | Plus |
Meics-PA | 583 | CG8474-PA | 21..423 | 7..339 | 344 | 24.4 | Plus |
gl-PB | 557 | CG7672-PB | 392..547 | 167..325 | 320 | 37.1 | Plus |
Meics-PB | 571 | CG8474-PB | 343..454 | 214..325 | 293 | 42.9 | Plus |
Meics-PA | 583 | CG8474-PA | 355..466 | 214..325 | 293 | 42.9 | Plus |
Meics-PB | 571 | CG8474-PB | 371..484 | 214..327 | 279 | 40.4 | Plus |
Meics-PA | 583 | CG8474-PA | 383..496 | 214..327 | 279 | 40.4 | Plus |
Meics-PB | 571 | CG8474-PB | 316..423 | 215..322 | 268 | 42.6 | Plus |
Meics-PA | 583 | CG8474-PA | 328..435 | 215..322 | 268 | 42.6 | Plus |
Meics-PB | 571 | CG8474-PB | 427..571 | 214..325 | 176 | 28.1 | Plus |
Meics-PA | 583 | CG8474-PA | 439..583 | 214..325 | 176 | 28.1 | Plus |