Clone Sequence Records
BS12832.complete Sequence
740 bp assembled on 2010-02-09
GenBank Submission: KX804797
> BS12832.complete
GAAGTTATCAGTCGACATGTCCGCAGGTCGAGTGGTTATTTACGGTGGCA
AAGGAGCCTTGGGTTCGGCCTGTGTCGATCACTTTAAAGCCAACAATTAT
TGGGTTGGCAGCATCGATCTGACGGAGAACGAGAAGGCCGACGTTAGCAT
TGTGGTGCCACGCGATGCTAGTTGGGTGGAACAGGAGGAAACGGTGGTGT
CCAAAGTCGGGGAATCCCTTGCCGGCGAGAAACTGGATGCCGTCATCTGC
GTGGCTGGCGGCTGGGCAGGTGGTAATGCCAAGAAGGATCTGGCCAAGAA
TGCCGATCTCATGTGGAAGCAGAGCGTGTTGACCTCCGCCATTTCGGCAG
CTGTGGCTGCTCAGCATCTAAAGGCCGGAGGCTTGCTGGCTCTCACTGGA
GCTAAGCCCGCTTTGGAGGGCACACCCGGTATGATCGGCTATGGAATGGC
CAAGGCAGCTGTCCACCAGCTGACCCGCTCGCTGGGCGCTGAGAAATCCG
GTCTGCCAGCTGGTTCCCTGGCTGTGTCCATACTTCCCGTAACTCTAGAT
ACACCCATGAACCGTAAATGGATGCCGGATGCAGATTTTGGAACCTGGAC
ACCGCTCACCGAGGTGGCCGGACTTTTCCTTAAGTGGACCCAAGATCAGG
AGAGGCCCAAAACTGGATCCCTGTTGCAGCTGATCACCACAAACGGCATT
ACGCAGCTTATCGCTGCCGAATAGAAGCTTTCTAGACCAT
BS12832.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhpr-RB | 708 | CG4665-PB | 1..708 | 17..724 | 3540 | 100 | Plus |
Dhpr-RA | 708 | CG4665-PA | 1..708 | 17..724 | 3540 | 100 | Plus |
Dhpr-RC | 708 | CG4665-PC | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhpr-RB | 880 | CG4665-RB | 40..748 | 16..724 | 3545 | 100 | Plus |
Dhpr-RA | 1261 | CG4665-RA | 247..955 | 16..724 | 3545 | 100 | Plus |
Dhpr-RC | 1087 | CG4665-RC | 247..955 | 16..724 | 3545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9134987..9135610 | 101..724 | 3120 | 100 | Plus |
3L | 28110227 | 3L | 9134806..9134890 | 16..100 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:21:35 has no hits.
BS12832.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:26 Download gff for
BS12832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RB | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:23 Download gff for
BS12832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RB | 41..748 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:32 Download gff for
BS12832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 248..955 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:16 Download gff for
BS12832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RB | 41..748 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:35 Download gff for
BS12832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 248..955 | 17..724 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:35 Download gff for
BS12832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9134807..9134890 | 17..100 | 100 | -> | Plus |
3L | 9134987..9135610 | 101..724 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:32 Download gff for
BS12832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9127907..9127990 | 17..100 | 100 | -> | Plus |
arm_3L | 9128087..9128710 | 101..724 | 100 | | Plus |
BS12832.3prime Sequence
738 bp (642 high quality bases) assembled on 2006-10-13
> BS12832.3prime
ATGGTCTAGAAAGCTTCTATTCGGCAGCGATAAGCTGCGTAATGCCGTTT
GTGGTGATCAGCTGCAACAGGGATCCAGTTTTGGGCCTCTCCTGATCTTG
GGTCCACTTAAGGAAAAGTCCGGCCACCTCGGTGAGCGGTGTCCAGGTTC
CAAAATCTGCATCCGGCATCCATTTACGGTTCATGGGTGTATCTAGAGTT
ACGGGAAGTATGGACACAGCCAGGGAACCAGCTGGCAGACCGGATTTCTC
AGCGCCCAGCGAGCGGGTCAGCTGGTGGACAGCTGCCTTGGCCATTCCAT
AGCCGATCATACCGGGTGTGCCCTCCAAAGCGGGCTTAGCTCCAGTGAGA
GCCAGCAAGCCTCCGGCCTTTAGATGCTGAGCAGCCACAGCTGCCGAAAT
GGCGGAGGTCAACACGCTCTGCTTCCACATGAGATCGGCATTCTTGGCCA
GATCCTTCTTGGCATTACCACCTGCCCAGCCGCCAGCCACGCAGATGACG
GCATCCAGTTTCTCGCCGGCAAGGGATTCCCCGACTTTGGACACCACCGT
TTCCTCCTGTTCCACCCAACTAGCATCGCGTGGCACCACAATGCTAACGT
CGGCCTTCTCGTTCTCCGTCAGATCGATGCTGCCAACCCAATAATTGTTG
GCTTTAAAGTGATCGACACAGGCCGAACCCAAGGCTCCTTTGCCACCGTA
AATAACCACTCGACCTGCGGACATGTCGACTGAAAACT
BS12832.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4665-PC | 708 | Dhpr-RC | 1..708 | 724..17 | 3540 | 100 | Minus |
CG4665-PA | 708 | Dhpr-RA | 1..708 | 724..17 | 3540 | 100 | Minus |
CG4665-PB | 708 | Dhpr-RB | 1..708 | 724..17 | 3540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhpr-RB | 880 | CG4665-RB | 40..748 | 725..17 | 3545 | 100 | Minus |
Dhpr-RA | 1261 | CG4665-RA | 247..955 | 725..17 | 3545 | 100 | Minus |
Dhpr-RC | 1087 | CG4665-RC | 247..955 | 725..17 | 3545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9134987..9135610 | 640..17 | 3120 | 100 | Minus |
3L | 28110227 | 3L | 9134806..9134890 | 725..641 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:30:54 has no hits.
BS12832.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:01 Download gff for
BS12832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4665-PB | 1..708 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:06:26 Download gff for
BS12832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 247..958 | 12..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:55 Download gff for
BS12832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 247..958 | 12..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:55 Download gff for
BS12832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9134806..9134890 | 641..725 | 100 | -> | Minus |
3L | 9134987..9135613 | 12..640 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:06:26 Download gff for
BS12832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9127906..9127990 | 641..725 | 100 | -> | Minus |
arm_3L | 9128087..9128713 | 12..640 | 99 | | Minus |
BS12832.5prime Sequence
738 bp (738 high quality bases) assembled on 2006-10-13
> BS12832.5prime
GAAGTTATCAGTCGACATGTCCGCAGGTCGAGTGGTTATTTACGGTGGCA
AAGGAGCCTTGGGTTCGGCCTGTGTCGATCACTTTAAAGCCAACAATTAT
TGGGTTGGCAGCATCGATCTGACGGAGAACGAGAAGGCCGACGTTAGCAT
TGTGGTGCCACGCGATGCTAGTTGGGTGGAACAGGAGGAAACGGTGGTGT
CCAAAGTCGGGGAATCCCTTGCCGGCGAGAAACTGGATGCCGTCATCTGC
GTGGCTGGCGGCTGGGCAGGTGGTAATGCCAAGAAGGATCTGGCCAAGAA
TGCCGATCTCATGTGGAAGCAGAGCGTGTTGACCTCCGCCATTTCGGCAG
CTGTGGCTGCTCAGCATCTAAAGGCCGGAGGCTTGCTGGCTCTCACTGGA
GCTAAGCCCGCTTTGGAGGGCACACCCGGTATGATCGGCTATGGAATGGC
CAAGGCAGCTGTCCACCAGCTGACCCGCTCGCTGGGCGCTGAGAAATCCG
GTCTGCCAGCTGGTTCCCTGGCTGTGTCCATACTTCCCGTAACTCTAGAT
ACACCCATGAACCGTAAATGGATGCCGGATGCAGATTTTGGAACCTGGAC
ACCGCTCACCGAGGTGGCCGGACTTTTCCTTAAGTGGACCCAAGATCAGG
AGAGGCCCAAAACTGGATCCCTGTTGCAGCTGATCACCACAAACGGCATT
ACGCAGCTTATCGCTGCCGAATAGAAGCTTTCTAGACC
BS12832.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4665-PC | 708 | Dhpr-RC | 1..708 | 17..724 | 3540 | 100 | Plus |
CG4665-PA | 708 | Dhpr-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
CG4665-PB | 708 | Dhpr-RB | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhpr-RB | 880 | CG4665-RB | 40..748 | 16..724 | 3545 | 100 | Plus |
Dhpr-RA | 1261 | CG4665-RA | 247..955 | 16..724 | 3545 | 100 | Plus |
Dhpr-RC | 1087 | CG4665-RC | 247..955 | 16..724 | 3545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9134987..9135610 | 101..724 | 3120 | 100 | Plus |
3L | 28110227 | 3L | 9134806..9134890 | 16..100 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:00:02 has no hits.
BS12832.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:01 Download gff for
BS12832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4665-PB | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:55:32 Download gff for
BS12832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 247..958 | 16..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:43 Download gff for
BS12832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 247..958 | 16..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:43 Download gff for
BS12832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9134806..9134890 | 16..100 | 100 | -> | Plus |
3L | 9134987..9135613 | 101..729 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:55:32 Download gff for
BS12832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9127906..9127990 | 16..100 | 100 | -> | Plus |
arm_3L | 9128087..9128713 | 101..729 | 99 | | Plus |
BS12832.pep Sequence
Translation from 16 to 723
> BS12832.pep
MSAGRVVIYGGKGALGSACVDHFKANNYWVGSIDLTENEKADVSIVVPRD
ASWVEQEETVVSKVGESLAGEKLDAVICVAGGWAGGNAKKDLAKNADLMW
KQSVLTSAISAAVAAQHLKAGGLLALTGAKPALEGTPGMIGYGMAKAAVH
QLTRSLGAEKSGLPAGSLAVSILPVTLDTPMNRKWMPDADFGTWTPLTEV
AGLFLKWTQDQERPKTGSLLQLITTNGITQLIAAE*
BS12832.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhpr-PB | 235 | CG4665-PB | 1..235 | 1..235 | 1204 | 100 | Plus |
Dhpr-PA | 235 | CG4665-PA | 1..235 | 1..235 | 1204 | 100 | Plus |
Dhpr-PC | 235 | CG4665-PC | 1..235 | 1..235 | 1204 | 100 | Plus |