Clone BS12832 Report

Search the DGRC for BS12832

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptDhpr-RA
Protein status:BS12832.pep: full length peptide match
Sequenced Size:740

Clone Sequence Records

BS12832.complete Sequence

740 bp assembled on 2010-02-09

GenBank Submission: KX804797

> BS12832.complete
GAAGTTATCAGTCGACATGTCCGCAGGTCGAGTGGTTATTTACGGTGGCA
AAGGAGCCTTGGGTTCGGCCTGTGTCGATCACTTTAAAGCCAACAATTAT
TGGGTTGGCAGCATCGATCTGACGGAGAACGAGAAGGCCGACGTTAGCAT
TGTGGTGCCACGCGATGCTAGTTGGGTGGAACAGGAGGAAACGGTGGTGT
CCAAAGTCGGGGAATCCCTTGCCGGCGAGAAACTGGATGCCGTCATCTGC
GTGGCTGGCGGCTGGGCAGGTGGTAATGCCAAGAAGGATCTGGCCAAGAA
TGCCGATCTCATGTGGAAGCAGAGCGTGTTGACCTCCGCCATTTCGGCAG
CTGTGGCTGCTCAGCATCTAAAGGCCGGAGGCTTGCTGGCTCTCACTGGA
GCTAAGCCCGCTTTGGAGGGCACACCCGGTATGATCGGCTATGGAATGGC
CAAGGCAGCTGTCCACCAGCTGACCCGCTCGCTGGGCGCTGAGAAATCCG
GTCTGCCAGCTGGTTCCCTGGCTGTGTCCATACTTCCCGTAACTCTAGAT
ACACCCATGAACCGTAAATGGATGCCGGATGCAGATTTTGGAACCTGGAC
ACCGCTCACCGAGGTGGCCGGACTTTTCCTTAAGTGGACCCAAGATCAGG
AGAGGCCCAAAACTGGATCCCTGTTGCAGCTGATCACCACAAACGGCATT
ACGCAGCTTATCGCTGCCGAATAGAAGCTTTCTAGACCAT

BS12832.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-RB 708 CG4665-PB 1..708 17..724 3540 100 Plus
Dhpr-RA 708 CG4665-PA 1..708 17..724 3540 100 Plus
Dhpr-RC 708 CG4665-PC 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-RB 880 CG4665-RB 40..748 16..724 3545 100 Plus
Dhpr-RA 1261 CG4665-RA 247..955 16..724 3545 100 Plus
Dhpr-RC 1087 CG4665-RC 247..955 16..724 3545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9134987..9135610 101..724 3120 100 Plus
3L 28110227 3L 9134806..9134890 16..100 425 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:21:35 has no hits.

BS12832.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:26 Download gff for BS12832.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RB 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:23 Download gff for BS12832.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RB 41..748 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:32 Download gff for BS12832.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 248..955 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:16 Download gff for BS12832.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RB 41..748 17..724 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:35 Download gff for BS12832.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 248..955 17..724 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:35 Download gff for BS12832.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9134807..9134890 17..100 100 -> Plus
3L 9134987..9135610 101..724 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:32 Download gff for BS12832.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9127907..9127990 17..100 100 -> Plus
arm_3L 9128087..9128710 101..724 100   Plus

BS12832.3prime Sequence

738 bp (642 high quality bases) assembled on 2006-10-13

> BS12832.3prime
ATGGTCTAGAAAGCTTCTATTCGGCAGCGATAAGCTGCGTAATGCCGTTT
GTGGTGATCAGCTGCAACAGGGATCCAGTTTTGGGCCTCTCCTGATCTTG
GGTCCACTTAAGGAAAAGTCCGGCCACCTCGGTGAGCGGTGTCCAGGTTC
CAAAATCTGCATCCGGCATCCATTTACGGTTCATGGGTGTATCTAGAGTT
ACGGGAAGTATGGACACAGCCAGGGAACCAGCTGGCAGACCGGATTTCTC
AGCGCCCAGCGAGCGGGTCAGCTGGTGGACAGCTGCCTTGGCCATTCCAT
AGCCGATCATACCGGGTGTGCCCTCCAAAGCGGGCTTAGCTCCAGTGAGA
GCCAGCAAGCCTCCGGCCTTTAGATGCTGAGCAGCCACAGCTGCCGAAAT
GGCGGAGGTCAACACGCTCTGCTTCCACATGAGATCGGCATTCTTGGCCA
GATCCTTCTTGGCATTACCACCTGCCCAGCCGCCAGCCACGCAGATGACG
GCATCCAGTTTCTCGCCGGCAAGGGATTCCCCGACTTTGGACACCACCGT
TTCCTCCTGTTCCACCCAACTAGCATCGCGTGGCACCACAATGCTAACGT
CGGCCTTCTCGTTCTCCGTCAGATCGATGCTGCCAACCCAATAATTGTTG
GCTTTAAAGTGATCGACACAGGCCGAACCCAAGGCTCCTTTGCCACCGTA
AATAACCACTCGACCTGCGGACATGTCGACTGAAAACT

BS12832.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4665-PC 708 Dhpr-RC 1..708 724..17 3540 100 Minus
CG4665-PA 708 Dhpr-RA 1..708 724..17 3540 100 Minus
CG4665-PB 708 Dhpr-RB 1..708 724..17 3540 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-RB 880 CG4665-RB 40..748 725..17 3545 100 Minus
Dhpr-RA 1261 CG4665-RA 247..955 725..17 3545 100 Minus
Dhpr-RC 1087 CG4665-RC 247..955 725..17 3545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9134987..9135610 640..17 3120 100 Minus
3L 28110227 3L 9134806..9134890 725..641 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:30:54 has no hits.

BS12832.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:01 Download gff for BS12832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4665-PB 1..708 17..724 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:06:26 Download gff for BS12832.3prime
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 247..958 12..725 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:55 Download gff for BS12832.3prime
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 247..958 12..725 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:55 Download gff for BS12832.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9134806..9134890 641..725 100 -> Minus
3L 9134987..9135613 12..640 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:06:26 Download gff for BS12832.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9127906..9127990 641..725 100 -> Minus
arm_3L 9128087..9128713 12..640 99   Minus

BS12832.5prime Sequence

738 bp (738 high quality bases) assembled on 2006-10-13

> BS12832.5prime
GAAGTTATCAGTCGACATGTCCGCAGGTCGAGTGGTTATTTACGGTGGCA
AAGGAGCCTTGGGTTCGGCCTGTGTCGATCACTTTAAAGCCAACAATTAT
TGGGTTGGCAGCATCGATCTGACGGAGAACGAGAAGGCCGACGTTAGCAT
TGTGGTGCCACGCGATGCTAGTTGGGTGGAACAGGAGGAAACGGTGGTGT
CCAAAGTCGGGGAATCCCTTGCCGGCGAGAAACTGGATGCCGTCATCTGC
GTGGCTGGCGGCTGGGCAGGTGGTAATGCCAAGAAGGATCTGGCCAAGAA
TGCCGATCTCATGTGGAAGCAGAGCGTGTTGACCTCCGCCATTTCGGCAG
CTGTGGCTGCTCAGCATCTAAAGGCCGGAGGCTTGCTGGCTCTCACTGGA
GCTAAGCCCGCTTTGGAGGGCACACCCGGTATGATCGGCTATGGAATGGC
CAAGGCAGCTGTCCACCAGCTGACCCGCTCGCTGGGCGCTGAGAAATCCG
GTCTGCCAGCTGGTTCCCTGGCTGTGTCCATACTTCCCGTAACTCTAGAT
ACACCCATGAACCGTAAATGGATGCCGGATGCAGATTTTGGAACCTGGAC
ACCGCTCACCGAGGTGGCCGGACTTTTCCTTAAGTGGACCCAAGATCAGG
AGAGGCCCAAAACTGGATCCCTGTTGCAGCTGATCACCACAAACGGCATT
ACGCAGCTTATCGCTGCCGAATAGAAGCTTTCTAGACC

BS12832.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4665-PC 708 Dhpr-RC 1..708 17..724 3540 100 Plus
CG4665-PA 708 Dhpr-RA 1..708 17..724 3540 100 Plus
CG4665-PB 708 Dhpr-RB 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-RB 880 CG4665-RB 40..748 16..724 3545 100 Plus
Dhpr-RA 1261 CG4665-RA 247..955 16..724 3545 100 Plus
Dhpr-RC 1087 CG4665-RC 247..955 16..724 3545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9134987..9135610 101..724 3120 100 Plus
3L 28110227 3L 9134806..9134890 16..100 425 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:00:02 has no hits.

BS12832.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:01 Download gff for BS12832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4665-PB 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:55:32 Download gff for BS12832.5prime
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 247..958 16..729 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:43 Download gff for BS12832.5prime
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 247..958 16..729 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:43 Download gff for BS12832.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9134806..9134890 16..100 100 -> Plus
3L 9134987..9135613 101..729 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:55:32 Download gff for BS12832.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9127906..9127990 16..100 100 -> Plus
arm_3L 9128087..9128713 101..729 99   Plus

BS12832.pep Sequence

Translation from 16 to 723

> BS12832.pep
MSAGRVVIYGGKGALGSACVDHFKANNYWVGSIDLTENEKADVSIVVPRD
ASWVEQEETVVSKVGESLAGEKLDAVICVAGGWAGGNAKKDLAKNADLMW
KQSVLTSAISAAVAAQHLKAGGLLALTGAKPALEGTPGMIGYGMAKAAVH
QLTRSLGAEKSGLPAGSLAVSILPVTLDTPMNRKWMPDADFGTWTPLTEV
AGLFLKWTQDQERPKTGSLLQLITTNGITQLIAAE*

BS12832.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-PB 235 CG4665-PB 1..235 1..235 1204 100 Plus
Dhpr-PA 235 CG4665-PA 1..235 1..235 1204 100 Plus
Dhpr-PC 235 CG4665-PC 1..235 1..235 1204 100 Plus