Clone Sequence Records
BS12834.3prime Sequence
793 bp (686 high quality bases) assembled on 2006-10-13
> BS12834.3prime
ATGGTCTAGAAAGCTTTTAGAGAAAGTAGTCCGCCTGAGGCTTCTTCGAG
GGAATGCCGCGACTCTCTTGCGGAGCTGCCTCAAAGATGACGAAGTCGCG
GTGCAGGTACTCATTCAGCTCCAGGATGGCAGCTACATTGCCGCAGCGAT
AGCAGTAATTGGGTGCCGACCAGACGGTCAGGACGGTTTCGTTGAAGTGC
CACTTGAAGCCCTCCATTACCAACTGGTGTGCACGGCAAATCATGTCGAT
ATCGTTCGTGCGGTTGAACTGGGAGACCACGTCCGAGCCAAAGAGATAGC
CAGCGCCGCGCGGCGACACGCCCCAGCCAGTCTGGTCCTCCGGATCGCTC
CAAAGCAGGTCGCACATGGGCCCGTCGTGCGGCACCTCCTGCTTCCGGTC
GATGCTGCGAATCTGGTCGAGGTACTGGATGGACGGCGACAGCCCGCCGT
GCACGCAGAATATTTTGCCGTCGATGATCGCCGAAAGGCTGAGGTAGTCA
AAGATCTCCGTGCAGTACCGCCACACGGCCGTCGATCCGTACTTGCGCAG
GCACTCATCGTAAAAGCCGTAGACCTGTGTGATTTGGCGCGACTCATGGT
TGCCCCGGATCAGCGTGATTCGGTCCGGATAGCGCACCTTCAGCGCCAAC
AGCAGCAGAAACGTCTCCACACTATAGTAGCCGCGGTCCCCGAAATCGCC
CATAAACAGGTAGTTCTTCTCGGGCACATCGCCGCCAACCTTGAACAGCT
CCTTCAGGTCGTAGAACTGACCGTGGATGTCGCCGCACACGGT
BS12834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32505-PA | 924 | Pp4-19C-RA | 148..924 | 793..17 | 3860 | 99.8 | Minus |
CG32505-PE | 924 | Pp4-19C-RE | 148..924 | 793..17 | 3860 | 99.8 | Minus |
CG7109-PA | 930 | mts-RA | 349..410 | 601..540 | 185 | 91.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp4-19C-RH | 2159 | CG32505-RH | 605..1381 | 793..17 | 3870 | 99.9 | Minus |
Pp4-19C-RG | 1856 | CG32505-RG | 302..1078 | 793..17 | 3870 | 99.9 | Minus |
Pp4-19C-RF | 1977 | CG32505-RF | 423..1199 | 793..17 | 3870 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20422059..20422705 | 147..793 | 3220 | 99.8 | Plus |
X | 23542271 | X | 20421865..20421995 | 17..147 | 655 | 100 | Plus |
2L | 23513712 | 2L | 7830519..7831022 | 790..287 | 480 | 73 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:51:07 has no hits.
BS12834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:02 Download gff for
BS12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32505-PE | 148..924 | 17..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:44 Download gff for
BS12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RA | 399..1182 | 11..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:06 Download gff for
BS12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RF | 423..1206 | 11..793 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:06 Download gff for
BS12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20421858..20421994 | 11..146 | 98 | <- | Plus |
X | 20422059..20422705 | 147..793 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:44 Download gff for
BS12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20292885..20293021 | 11..146 | 98 | <- | Plus |
arm_X | 20293086..20293732 | 147..793 | 99 | | Plus |
BS12834.5prime Sequence
842 bp (794 high quality bases) assembled on 2006-10-13
> BS12834.5prime
GAAGTTATCAGTCGACATGTCCGACTACAGCGACCTGGACCGACAGATCG
AGCAACTGAAGCGCTGCGAGATCATCAAGGAGAACGAGGTGAAGGCCCTG
TGCGCCAAAGCCCGCGAGATCCTGGTGGAGGAGGGCAACGTGCAGCGTGT
GGACTCGCCAGTGACCGTGTGCGGCGACATCCACGGTCAGTTCTACGACC
TGAAGGAGCTGTTCAAGGTTGGCGGCGATGTGCCCGAGAAGAACTACCTG
TTTATGGGCGATTTCGTGGACCGCGGCTACTATAGTGTGGAGACGTTTCT
GCTGCTGTTGGCGCTGAAGGTGCGCTATCCGGACCGAATCACGCTGATCC
GGGGCAACCATGAGTCGCGCCAAATCACACAGGTCTACGGCTTTTACGAT
GAGTGCCTGCGCAAGTACGGATCGACGGCCGTGTGGCGGTACTGCACGGA
GATCTTTGACTACCTCAGCCTTTCGGCGATCATCGACGGCAAAATATTCT
GCGTGCACGGCGGGCTGTCGCCGTCCATCCAGTACCTCGACCAGATTCGC
AGCATCGACCGGAAGCAGGAGGTGCCGCACGACGGGCCCATGTGCGACCT
GCTTTGGAGCGATCCGGAGGACCAGACTGGCTGGGGCGTGTCGCCGCGCG
GCGCTGGCTATCTCTTTGGCTCGGACGTGGTCTCCCAGTTCAACCGCACG
AACGATATCGACATGATTTGCCGTGCACACCAGTTGGTAATGGAGGGCTT
CAAGTGGCACTTCAACGAAACCGTCCTGACCGTCTGGTCGGCACCCAATT
ACTGCTATCGCTGCGGCAATGTAGCTGCCATCCTGGAGCTGA
BS12834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32505-PA | 924 | Pp4-19C-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
CG32505-PE | 924 | Pp4-19C-RE | 1..826 | 17..842 | 4130 | 100 | Plus |
CG7109-PA | 930 | mts-RA | 349..410 | 356..417 | 185 | 91.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp4-19C-RH | 2159 | CG32505-RH | 458..1283 | 17..842 | 4130 | 100 | Plus |
Pp4-19C-RG | 1856 | CG32505-RG | 155..980 | 17..842 | 4130 | 100 | Plus |
Pp4-19C-RF | 1977 | CG32505-RF | 276..1101 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20422059..20422852 | 810..17 | 3970 | 100 | Minus |
2L | 23513712 | 2L | 7830513..7831022 | 161..670 | 510 | 73.3 | Plus |
X | 23542271 | X | 16558892..16558962 | 226..156 | 205 | 85.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:17:28 has no hits.
BS12834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:02 Download gff for
BS12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32505-PE | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:01 Download gff for
BS12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RA | 246..1076 | 11..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:30 Download gff for
BS12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RF | 270..1100 | 11..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:30 Download gff for
BS12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20421964..20421994 | 811..841 | 100 | <- | Minus |
X | 20422059..20422858 | 11..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:01 Download gff for
BS12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20292991..20293021 | 811..841 | 100 | <- | Minus |
arm_X | 20293086..20293885 | 11..810 | 99 | | Minus |
BS12834.complete Sequence
956 bp assembled on 2006-11-01
GenBank Submission: FJ637310
> BS12834.complete
GAAGTTATCAGTCGACATGTCCGACTACAGCGACCTGGACCGACAGATCG
AGCAACTGAAGCGCTGCGAGATCATCAAGGAGAACGAGGTGAAGGCCCTG
TGCGCCAAAGCCCGCGAGATCCTGGTGGAGGAGGGCAACGTGCAGCGTGT
GGACTCGCCAGTGACCGTGTGCGGCGACATCCACGGTCAGTTCTACGACC
TGAAGGAGCTGTTCAAGGTTGGCGGCGATGTGCCCGAGAAGAACTACCTG
TTTATGGGCGATTTCGTGGACCGCGGCTACTATAGTGTGGAGACGTTTCT
GCTGCTGTTGGCGCTGAAGGTGCGCTATCCGGACCGAATCACGCTGATCC
GGGGCAACCATGAGTCGCGCCAAATCACACAGGTCTACGGCTTTTACGAT
GAGTGCCTGCGCAAGTACGGATCGACGGCCGTGTGGCGGTACTGCACGGA
GATCTTTGACTACCTCAGCCTTTCGGCGATCATCGACGGCAAAATATTCT
GCGTGCACGGCGGGCTGTCGCCGTCCATCCAGTACCTCGACCAGATTCGC
AGCATCGACCGGAAGCAGGAGGTGCCGCACGACGGGCCCATGTGCGACCT
GCTTTGGAGCGATCCGGAGGACCAGACTGGCTGGGGCGTGTCGCCGCGCG
GCGCTGGCTATCTCTTTGGCTCGGACGTGGTCTCCCAGTTCAACCGCACG
AACGATATCGACATGATTTGCCGTGCACACCAGTTGGTAATGGAGGGCTT
CAAGTGGCACTTCAACGAAACCGTCCTGACCGTCTGGTCGGCACCCAATT
ACTGCTATCGCTGCGGCAATGTAGCTGCCATCCTGGAGCTGAATGAGTAC
CTGCACCGCGACTTCGTCATCTTTGAGGCAGCTCCGCAAGAGAGTCGCGG
CATTCCCTCGAAGAAGCCTCAGGCGGACTACTTTCTCTAAAAGCTTTCTA
GACCAT
BS12834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp4-19C-RH | 924 | CG32505-PH | 1..924 | 17..940 | 4620 | 100 | Plus |
Pp4-19C-RG | 924 | CG32505-PG | 1..924 | 17..940 | 4620 | 100 | Plus |
Pp4-19C-RF | 924 | CG32505-PF | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp4-19C-RH | 2159 | CG32505-RH | 458..1381 | 17..940 | 4620 | 100 | Plus |
Pp4-19C-RG | 1856 | CG32505-RG | 155..1078 | 17..940 | 4620 | 100 | Plus |
Pp4-19C-RF | 1977 | CG32505-RF | 276..1199 | 17..940 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20422059..20422852 | 810..17 | 3970 | 100 | Minus |
X | 23542271 | X | 20421865..20421995 | 940..810 | 655 | 100 | Minus |
2L | 23513712 | 2L | 7830513..7831022 | 161..670 | 510 | 73.3 | Plus |
X | 23542271 | X | 16558892..16558962 | 226..156 | 205 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:23:12 has no hits.
BS12834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:56 Download gff for
BS12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RE | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:08 Download gff for
BS12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RE | 516..1452 | 11..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:36 Download gff for
BS12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RA | 252..1173 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:56 Download gff for
BS12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RE | 516..1452 | 11..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:56 Download gff for
BS12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RF | 276..1197 | 17..938 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:56 Download gff for
BS12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20421867..20421994 | 811..938 | 100 | <- | Minus |
X | 20422059..20422852 | 17..810 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:36 Download gff for
BS12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20292894..20293021 | 811..938 | 100 | <- | Minus |
arm_X | 20293086..20293879 | 17..810 | 100 | | Minus |
BS12834.pep Sequence
Translation from 16 to 939
> BS12834.pep
MSDYSDLDRQIEQLKRCEIIKENEVKALCAKAREILVEEGNVQRVDSPVT
VCGDIHGQFYDLKELFKVGGDVPEKNYLFMGDFVDRGYYSVETFLLLLAL
KVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSTAVWRYCTEIFDYL
SLSAIIDGKIFCVHGGLSPSIQYLDQIRSIDRKQEVPHDGPMCDLLWSDP
EDQTGWGVSPRGAGYLFGSDVVSQFNRTNDIDMICRAHQLVMEGFKWHFN
ETVLTVWSAPNYCYRCGNVAAILELNEYLHRDFVIFEAAPQESRGIPSKK
PQADYFL*
BS12834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp4-19C-PH | 307 | CG32505-PH | 1..307 | 1..307 | 1653 | 100 | Plus |
Pp4-19C-PG | 307 | CG32505-PG | 1..307 | 1..307 | 1653 | 100 | Plus |
Pp4-19C-PF | 307 | CG32505-PF | 1..307 | 1..307 | 1653 | 100 | Plus |
Pp4-19C-PE | 307 | CG32505-PE | 1..307 | 1..307 | 1653 | 100 | Plus |
Pp4-19C-PA | 307 | CG32505-PA | 1..307 | 1..307 | 1653 | 100 | Plus |