Clone BS12834 Report

Search the DGRC for BS12834

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptPp4-19C-RA
Protein status:BS12834.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12834.3prime Sequence

793 bp (686 high quality bases) assembled on 2006-10-13

> BS12834.3prime
ATGGTCTAGAAAGCTTTTAGAGAAAGTAGTCCGCCTGAGGCTTCTTCGAG
GGAATGCCGCGACTCTCTTGCGGAGCTGCCTCAAAGATGACGAAGTCGCG
GTGCAGGTACTCATTCAGCTCCAGGATGGCAGCTACATTGCCGCAGCGAT
AGCAGTAATTGGGTGCCGACCAGACGGTCAGGACGGTTTCGTTGAAGTGC
CACTTGAAGCCCTCCATTACCAACTGGTGTGCACGGCAAATCATGTCGAT
ATCGTTCGTGCGGTTGAACTGGGAGACCACGTCCGAGCCAAAGAGATAGC
CAGCGCCGCGCGGCGACACGCCCCAGCCAGTCTGGTCCTCCGGATCGCTC
CAAAGCAGGTCGCACATGGGCCCGTCGTGCGGCACCTCCTGCTTCCGGTC
GATGCTGCGAATCTGGTCGAGGTACTGGATGGACGGCGACAGCCCGCCGT
GCACGCAGAATATTTTGCCGTCGATGATCGCCGAAAGGCTGAGGTAGTCA
AAGATCTCCGTGCAGTACCGCCACACGGCCGTCGATCCGTACTTGCGCAG
GCACTCATCGTAAAAGCCGTAGACCTGTGTGATTTGGCGCGACTCATGGT
TGCCCCGGATCAGCGTGATTCGGTCCGGATAGCGCACCTTCAGCGCCAAC
AGCAGCAGAAACGTCTCCACACTATAGTAGCCGCGGTCCCCGAAATCGCC
CATAAACAGGTAGTTCTTCTCGGGCACATCGCCGCCAACCTTGAACAGCT
CCTTCAGGTCGTAGAACTGACCGTGGATGTCGCCGCACACGGT

BS12834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32505-PA 924 Pp4-19C-RA 148..924 793..17 3860 99.8 Minus
CG32505-PE 924 Pp4-19C-RE 148..924 793..17 3860 99.8 Minus
CG7109-PA 930 mts-RA 349..410 601..540 185 91.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Pp4-19C-RH 2159 CG32505-RH 605..1381 793..17 3870 99.9 Minus
Pp4-19C-RG 1856 CG32505-RG 302..1078 793..17 3870 99.9 Minus
Pp4-19C-RF 1977 CG32505-RF 423..1199 793..17 3870 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20422059..20422705 147..793 3220 99.8 Plus
X 23542271 X 20421865..20421995 17..147 655 100 Plus
2L 23513712 2L 7830519..7831022 790..287 480 73 Minus
Blast to na_te.dros performed on 2015-02-12 17:51:07 has no hits.

BS12834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:02 Download gff for BS12834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32505-PE 148..924 17..793 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:44 Download gff for BS12834.3prime
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RA 399..1182 11..793 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:06 Download gff for BS12834.3prime
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RF 423..1206 11..793 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:06 Download gff for BS12834.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20421858..20421994 11..146 98 <- Plus
X 20422059..20422705 147..793 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:44 Download gff for BS12834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20292885..20293021 11..146 98 <- Plus
arm_X 20293086..20293732 147..793 99   Plus

BS12834.5prime Sequence

842 bp (794 high quality bases) assembled on 2006-10-13

> BS12834.5prime
GAAGTTATCAGTCGACATGTCCGACTACAGCGACCTGGACCGACAGATCG
AGCAACTGAAGCGCTGCGAGATCATCAAGGAGAACGAGGTGAAGGCCCTG
TGCGCCAAAGCCCGCGAGATCCTGGTGGAGGAGGGCAACGTGCAGCGTGT
GGACTCGCCAGTGACCGTGTGCGGCGACATCCACGGTCAGTTCTACGACC
TGAAGGAGCTGTTCAAGGTTGGCGGCGATGTGCCCGAGAAGAACTACCTG
TTTATGGGCGATTTCGTGGACCGCGGCTACTATAGTGTGGAGACGTTTCT
GCTGCTGTTGGCGCTGAAGGTGCGCTATCCGGACCGAATCACGCTGATCC
GGGGCAACCATGAGTCGCGCCAAATCACACAGGTCTACGGCTTTTACGAT
GAGTGCCTGCGCAAGTACGGATCGACGGCCGTGTGGCGGTACTGCACGGA
GATCTTTGACTACCTCAGCCTTTCGGCGATCATCGACGGCAAAATATTCT
GCGTGCACGGCGGGCTGTCGCCGTCCATCCAGTACCTCGACCAGATTCGC
AGCATCGACCGGAAGCAGGAGGTGCCGCACGACGGGCCCATGTGCGACCT
GCTTTGGAGCGATCCGGAGGACCAGACTGGCTGGGGCGTGTCGCCGCGCG
GCGCTGGCTATCTCTTTGGCTCGGACGTGGTCTCCCAGTTCAACCGCACG
AACGATATCGACATGATTTGCCGTGCACACCAGTTGGTAATGGAGGGCTT
CAAGTGGCACTTCAACGAAACCGTCCTGACCGTCTGGTCGGCACCCAATT
ACTGCTATCGCTGCGGCAATGTAGCTGCCATCCTGGAGCTGA

BS12834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32505-PA 924 Pp4-19C-RA 1..826 17..842 4130 100 Plus
CG32505-PE 924 Pp4-19C-RE 1..826 17..842 4130 100 Plus
CG7109-PA 930 mts-RA 349..410 356..417 185 91.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pp4-19C-RH 2159 CG32505-RH 458..1283 17..842 4130 100 Plus
Pp4-19C-RG 1856 CG32505-RG 155..980 17..842 4130 100 Plus
Pp4-19C-RF 1977 CG32505-RF 276..1101 17..842 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20422059..20422852 810..17 3970 100 Minus
2L 23513712 2L 7830513..7831022 161..670 510 73.3 Plus
X 23542271 X 16558892..16558962 226..156 205 85.9 Minus
Blast to na_te.dros performed on 2015-02-12 11:17:28 has no hits.

BS12834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:02 Download gff for BS12834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32505-PE 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:01 Download gff for BS12834.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RA 246..1076 11..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:30 Download gff for BS12834.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RF 270..1100 11..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:30 Download gff for BS12834.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20421964..20421994 811..841 100 <- Minus
X 20422059..20422858 11..810 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:01 Download gff for BS12834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20292991..20293021 811..841 100 <- Minus
arm_X 20293086..20293885 11..810 99   Minus

BS12834.complete Sequence

956 bp assembled on 2006-11-01

GenBank Submission: FJ637310

> BS12834.complete
GAAGTTATCAGTCGACATGTCCGACTACAGCGACCTGGACCGACAGATCG
AGCAACTGAAGCGCTGCGAGATCATCAAGGAGAACGAGGTGAAGGCCCTG
TGCGCCAAAGCCCGCGAGATCCTGGTGGAGGAGGGCAACGTGCAGCGTGT
GGACTCGCCAGTGACCGTGTGCGGCGACATCCACGGTCAGTTCTACGACC
TGAAGGAGCTGTTCAAGGTTGGCGGCGATGTGCCCGAGAAGAACTACCTG
TTTATGGGCGATTTCGTGGACCGCGGCTACTATAGTGTGGAGACGTTTCT
GCTGCTGTTGGCGCTGAAGGTGCGCTATCCGGACCGAATCACGCTGATCC
GGGGCAACCATGAGTCGCGCCAAATCACACAGGTCTACGGCTTTTACGAT
GAGTGCCTGCGCAAGTACGGATCGACGGCCGTGTGGCGGTACTGCACGGA
GATCTTTGACTACCTCAGCCTTTCGGCGATCATCGACGGCAAAATATTCT
GCGTGCACGGCGGGCTGTCGCCGTCCATCCAGTACCTCGACCAGATTCGC
AGCATCGACCGGAAGCAGGAGGTGCCGCACGACGGGCCCATGTGCGACCT
GCTTTGGAGCGATCCGGAGGACCAGACTGGCTGGGGCGTGTCGCCGCGCG
GCGCTGGCTATCTCTTTGGCTCGGACGTGGTCTCCCAGTTCAACCGCACG
AACGATATCGACATGATTTGCCGTGCACACCAGTTGGTAATGGAGGGCTT
CAAGTGGCACTTCAACGAAACCGTCCTGACCGTCTGGTCGGCACCCAATT
ACTGCTATCGCTGCGGCAATGTAGCTGCCATCCTGGAGCTGAATGAGTAC
CTGCACCGCGACTTCGTCATCTTTGAGGCAGCTCCGCAAGAGAGTCGCGG
CATTCCCTCGAAGAAGCCTCAGGCGGACTACTTTCTCTAAAAGCTTTCTA
GACCAT

BS12834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pp4-19C-RH 924 CG32505-PH 1..924 17..940 4620 100 Plus
Pp4-19C-RG 924 CG32505-PG 1..924 17..940 4620 100 Plus
Pp4-19C-RF 924 CG32505-PF 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pp4-19C-RH 2159 CG32505-RH 458..1381 17..940 4620 100 Plus
Pp4-19C-RG 1856 CG32505-RG 155..1078 17..940 4620 100 Plus
Pp4-19C-RF 1977 CG32505-RF 276..1199 17..940 4620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20422059..20422852 810..17 3970 100 Minus
X 23542271 X 20421865..20421995 940..810 655 100 Minus
2L 23513712 2L 7830513..7831022 161..670 510 73.3 Plus
X 23542271 X 16558892..16558962 226..156 205 85.9 Minus
Blast to na_te.dros performed on 2014-11-28 00:23:12 has no hits.

BS12834.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:56 Download gff for BS12834.complete
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RE 1..924 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:08 Download gff for BS12834.complete
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RE 516..1452 11..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:36 Download gff for BS12834.complete
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RA 252..1173 17..938 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:56 Download gff for BS12834.complete
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RE 516..1452 11..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:56 Download gff for BS12834.complete
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RF 276..1197 17..938 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:56 Download gff for BS12834.complete
Subject Subject Range Query Range Percent Splice Strand
X 20421867..20421994 811..938 100 <- Minus
X 20422059..20422852 17..810 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:36 Download gff for BS12834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20292894..20293021 811..938 100 <- Minus
arm_X 20293086..20293879 17..810 100   Minus

BS12834.pep Sequence

Translation from 16 to 939

> BS12834.pep
MSDYSDLDRQIEQLKRCEIIKENEVKALCAKAREILVEEGNVQRVDSPVT
VCGDIHGQFYDLKELFKVGGDVPEKNYLFMGDFVDRGYYSVETFLLLLAL
KVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSTAVWRYCTEIFDYL
SLSAIIDGKIFCVHGGLSPSIQYLDQIRSIDRKQEVPHDGPMCDLLWSDP
EDQTGWGVSPRGAGYLFGSDVVSQFNRTNDIDMICRAHQLVMEGFKWHFN
ETVLTVWSAPNYCYRCGNVAAILELNEYLHRDFVIFEAAPQESRGIPSKK
PQADYFL*

BS12834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pp4-19C-PH 307 CG32505-PH 1..307 1..307 1653 100 Plus
Pp4-19C-PG 307 CG32505-PG 1..307 1..307 1653 100 Plus
Pp4-19C-PF 307 CG32505-PF 1..307 1..307 1653 100 Plus
Pp4-19C-PE 307 CG32505-PE 1..307 1..307 1653 100 Plus
Pp4-19C-PA 307 CG32505-PA 1..307 1..307 1653 100 Plus