Clone Sequence Records
BS12835.3prime Sequence
764 bp (714 high quality bases) assembled on 2006-10-13
> BS12835.3prime
ATGGTCTAGAAAGCTTTTATAAAGACTTCATTATTAGTTCCTCCAACTGT
TTTGTATCTATTTCGGGTTGGTGGCCGCCTCCTGCCTCCGAGTTGATCCA
GTACTCGGAAACAGCAATGTACCCTGCCACTGCCGCCCCAACAATGCAAC
CCCAGGCAATATGAGTAGAGCTCTGGAAGATGACACAGGTGGCCACGCAC
ATTCCGAAGTAGGTGAGCATTCGCGTAAAGCTTACGTAGTTGCTGCGTTG
CTCCGCAGAAATATCATGACACTTTCCTTCCTTCAACTCATAGCCATCCG
CACACTTCCTGCACATGTCAGGGCCATCACCATCGCATCCATCGCAAGAT
CGATCACACTCCAGGCAACTAAAGGAGCCCTCATTGTTCACGCAGAACTG
CTGTGGTCGGCAAGGGTTTGGACGCTGTTGCTCCAAGCACTCATTAATGT
CGACACATCCTGCCTCCGAGTCCATGCTCCAGCCCTTCTTACACTTGCGG
CAGCTCTTGGGACCACCTCCCGTGCAGCCTCCTTCCCCACAGGCCGCATG
GCACTGTGTACACAGCAATTTCTTTTCGTCACGGAATGATTCGTAGTGCT
CCGGTCCACATTCGTTGCAGTTTGGACCCGCATAGCCGGGATCACATTTG
CACTTTCCGTTACCCTTTCTAGTTCCGTCTCCTTTGCATTTTCCATTTCC
ATTGCACTCGGTGCAGGTCAGGCAGTCTGGTCCGTAGGTGTTCAGCGGAC
AGCAGACTGTTAGC
BS12835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-PA | 1125 | CG11377-RA | 378..1125 | 764..17 | 3740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-RA | 1583 | CG11377-RA | 457..1204 | 764..17 | 3740 | 100 | Minus |
CG11377-RB | 1221 | CG11377-RB | 457..956 | 764..265 | 2500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 103005..103434 | 694..265 | 2150 | 100 | Minus |
2L | 23513712 | 2L | 103515..103763 | 265..17 | 1245 | 100 | Minus |
2L | 23513712 | 2L | 102836..102907 | 764..693 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:59:47 has no hits.
BS12835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:02 Download gff for
BS12835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-PA | 378..1125 | 17..764 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:48 Download gff for
BS12835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 457..1204 | 17..764 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:21 Download gff for
BS12835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 457..1204 | 17..764 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:21 Download gff for
BS12835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 102836..102906 | 694..764 | 100 | -> | Minus |
2L | 103006..103434 | 265..693 | 100 | -> | Minus |
2L | 103516..103763 | 17..264 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:48 Download gff for
BS12835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 103006..103434 | 265..693 | 100 | -> | Minus |
arm_2L | 102836..102906 | 694..764 | 100 | -> | Minus |
arm_2L | 103516..103763 | 17..264 | 100 | | Minus |
BS12835.5prime Sequence
890 bp (710 high quality bases) assembled on 2006-10-13
> BS12835.5prime
GAAGTTATCAGTCGACATGAGAATCAAGTATTGTTGGCTCGCAACGCTAG
TATTCATAGCCGCTGCTTCGGCGTCATATTCTCCCGAAAAGCCTGTTCCG
CCGCCCTGCAGGGCATGTACCCAGCTTGTTAGCTCTTTCAGGGCAGGACT
CGAAAGGACAAAACGCGGACACGCGGGCGGGGACACGGCATGGGAGGAGG
AAAAGTTGCGTTCGTACAAGAACAGCGAGGTACGGCTAGTGGAGATCCAG
GAGAAGCTATGTTCGGAAGGAGAAGTGATAAACAAGGATCACTGCCACAA
CCTGGCTAACGAGCACGAGGCGCTTCTCGAGGACTGGTTTATCCACAAAC
AAACAGAGAGTCCCGACCTGCAGTCATGGCTTTGCATCGATCAGCTAACA
GTCTGCTGTCCGCTGAACACCTACGGACCAGACTGCCTGACCTGCACCGA
GTGCAATGGAAATGGAAAATGCAAAGGAGACGGAACTAGAAAGGGTAACG
GAAAGTGCAAATGTGATCCCGGCTATGCGGGTCCAAACTGCAACGAATGT
GGACCGGAGCACTACGAATCATTCCGTGACGAAAAGAAATTGCTGTGTAC
ACAGTGCCATGCGGCCTGTGGGGAAGGAGGCTGCACGGGAGGTGGTCCCA
AGAGCTGCCGCAAGTGTAAGAAGGGCTGGAGCATGGACTCGGAGGCAGGA
TGTGTCGACATTAATGAGTGCTTGGAGCAACAGCGTCCAAACCCTTGCCG
ACCACAGCAGTTCTGCGTGAACAATGAGGGCTCTTTTAGTTGCCTGGAGT
GTGATCGATCTTGCGATGGATGCGATGGTGATGGCCCTGACATGTGGCAG
AAGTGTGCGGATGGCTATGAGTTGAAGAAAGAAAGTGTCA
BS12835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-PA | 1125 | CG11377-RA | 1..830 | 17..846 | 4125 | 99.8 | Plus |
CG11377-PA | 1125 | CG11377-RA | 834..861 | 850..877 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-RB | 1221 | CG11377-RB | 80..954 | 17..890 | 4275 | 99.4 | Plus |
CG11377-RA | 1583 | CG11377-RA | 80..954 | 17..890 | 4275 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 102459..102907 | 17..465 | 2245 | 100 | Plus |
2L | 23513712 | 2L | 103005..103422 | 464..881 | 2015 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:30:05 has no hits.
BS12835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:03 Download gff for
BS12835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-PA | 1..874 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:43 Download gff for
BS12835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 80..953 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:55 Download gff for
BS12835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 80..953 | 17..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:55 Download gff for
BS12835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 102459..102906 | 17..464 | 100 | -> | Plus |
2L | 103006..103431 | 465..889 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:43 Download gff for
BS12835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 102459..102906 | 17..464 | 100 | -> | Plus |
arm_2L | 103006..103431 | 465..889 | 98 | | Plus |
BS12835.complete Sequence
1157 bp assembled on 2006-11-01
GenBank Submission: FJ637311
> BS12835.complete
GAAGTTATCAGTCGACATGAGAATCAAGTATTGTTGGCTCGCAACGCTAG
TATTCATAGCCGCTGCTTCGGCGTCATATTCTCCCGAAAAGCCTGTTCCG
CCGCCCTGCAGGGCATGTACCCAGCTTGTTAGCTCTTTCAGGGCAGGACT
CGAAAGGACAAAACGCGGACACGCGGGCGGGGACACGGCATGGGAGGAGG
AAAAGTTGCGTTCGTACAAGAACAGCGAGGTACGGCTAGTGGAGATCCAG
GAGAAGCTATGTTCGGAAGGAGAAGTGATAAACAAGGATCACTGCCACAA
CCTGGCTAACGAGCACGAGGCGCTTCTCGAGGACTGGTTTATCCACAAAC
AAACAGAGAGTCCCGACCTGCAGTCATGGCTTTGCATCGATCAGCTAACA
GTCTGCTGTCCGCTGAACACCTACGGACCAGACTGCCTGACCTGCACCGA
GTGCAATGGAAATGGAAAATGCAAAGGAGACGGAACTAGAAAGGGTAACG
GAAAGTGCAAATGTGATCCCGGCTATGCGGGTCCAAACTGCAACGAATGT
GGACCGGAGCACTACGAATCATTCCGTGACGAAAAGAAATTGCTGTGTAC
ACAGTGCCATGCGGCCTGTGGGGAAGGAGGCTGCACGGGAGGTGGTCCCA
AGAGCTGCCGCAAGTGTAAGAAGGGCTGGAGCATGGACTCGGAGGCAGGA
TGTGTCGACATTAATGAGTGCTTGGAGCAACAGCGTCCAAACCCTTGCCG
ACCACAGCAGTTCTGCGTGAACAATGAGGGCTCCTTTAGTTGCCTGGAGT
GTGATCGATCTTGCGATGGATGCGATGGTGATGGCCCTGACATGTGCAGG
AAGTGTGCGGATGGCTATGAGTTGAAGGAAGGAAAGTGTCATGATATTTC
TGCGGAGCAACGCAGCAACTACGTAAGCTTTACGCGAATGCTCACCTACT
TCGGAATGTGCGTGGCCACCTGTGTCATCTTCCAGAGCTCTACTCATATT
GCCTGGGGTTGCATTGTTGGGGCGGCAGTGGCAGGGTACATTGCTGTTTC
CGAGTACTGGATCAACTCGGAGGCAGGAGGCGGCCACCAACCCGAAATAG
ATACAAAACAGTTGGAGGAACTAATAATGAAGTCTTTATAAAAGCTTTCT
AGACCAT
BS12835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-RA | 1125 | CG11377-PA | 1..1125 | 17..1141 | 5625 | 100 | Plus |
CG11377-RB | 936 | CG11377-PB | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-RA | 1583 | CG11377-RA | 80..1204 | 17..1141 | 5625 | 100 | Plus |
CG11377-RB | 1221 | CG11377-RB | 80..956 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 102459..102907 | 17..465 | 2245 | 100 | Plus |
2L | 23513712 | 2L | 103005..103434 | 464..893 | 2150 | 100 | Plus |
2L | 23513712 | 2L | 103515..103763 | 893..1141 | 1245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:57:18 has no hits.
BS12835.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:57 Download gff for
BS12835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 1..1125 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:10 Download gff for
BS12835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 78..1202 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:49 Download gff for
BS12835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 80..1202 | 17..1139 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:57 Download gff for
BS12835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 78..1202 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:55 Download gff for
BS12835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 80..1202 | 17..1139 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:55 Download gff for
BS12835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 102459..102906 | 17..464 | 100 | -> | Plus |
2L | 103006..103434 | 465..893 | 100 | -> | Plus |
2L | 103516..103761 | 894..1139 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:49 Download gff for
BS12835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 102459..102906 | 17..464 | 100 | -> | Plus |
arm_2L | 103006..103434 | 465..893 | 100 | -> | Plus |
arm_2L | 103516..103761 | 894..1139 | 100 | | Plus |
BS12835.pep Sequence
Translation from 16 to 1140
> BS12835.pep
MRIKYCWLATLVFIAAASASYSPEKPVPPPCRACTQLVSSFRAGLERTKR
GHAGGDTAWEEEKLRSYKNSEVRLVEIQEKLCSEGEVINKDHCHNLANEH
EALLEDWFIHKQTESPDLQSWLCIDQLTVCCPLNTYGPDCLTCTECNGNG
KCKGDGTRKGNGKCKCDPGYAGPNCNECGPEHYESFRDEKKLLCTQCHAA
CGEGGCTGGGPKSCRKCKKGWSMDSEAGCVDINECLEQQRPNPCRPQQFC
VNNEGSFSCLECDRSCDGCDGDGPDMCRKCADGYELKEGKCHDISAEQRS
NYVSFTRMLTYFGMCVATCVIFQSSTHIAWGCIVGAAVAGYIAVSEYWIN
SEAGGGHQPEIDTKQLEELIMKSL*
BS12835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-PA | 374 | CG11377-PA | 1..374 | 1..374 | 2119 | 100 | Plus |
CG11377-PB | 311 | CG11377-PB | 1..292 | 1..292 | 1689 | 100 | Plus |