Clone BS12835 Report

Search the DGRC for BS12835

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG11377-RA
Protein status:BS12835.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12835.3prime Sequence

764 bp (714 high quality bases) assembled on 2006-10-13

> BS12835.3prime
ATGGTCTAGAAAGCTTTTATAAAGACTTCATTATTAGTTCCTCCAACTGT
TTTGTATCTATTTCGGGTTGGTGGCCGCCTCCTGCCTCCGAGTTGATCCA
GTACTCGGAAACAGCAATGTACCCTGCCACTGCCGCCCCAACAATGCAAC
CCCAGGCAATATGAGTAGAGCTCTGGAAGATGACACAGGTGGCCACGCAC
ATTCCGAAGTAGGTGAGCATTCGCGTAAAGCTTACGTAGTTGCTGCGTTG
CTCCGCAGAAATATCATGACACTTTCCTTCCTTCAACTCATAGCCATCCG
CACACTTCCTGCACATGTCAGGGCCATCACCATCGCATCCATCGCAAGAT
CGATCACACTCCAGGCAACTAAAGGAGCCCTCATTGTTCACGCAGAACTG
CTGTGGTCGGCAAGGGTTTGGACGCTGTTGCTCCAAGCACTCATTAATGT
CGACACATCCTGCCTCCGAGTCCATGCTCCAGCCCTTCTTACACTTGCGG
CAGCTCTTGGGACCACCTCCCGTGCAGCCTCCTTCCCCACAGGCCGCATG
GCACTGTGTACACAGCAATTTCTTTTCGTCACGGAATGATTCGTAGTGCT
CCGGTCCACATTCGTTGCAGTTTGGACCCGCATAGCCGGGATCACATTTG
CACTTTCCGTTACCCTTTCTAGTTCCGTCTCCTTTGCATTTTCCATTTCC
ATTGCACTCGGTGCAGGTCAGGCAGTCTGGTCCGTAGGTGTTCAGCGGAC
AGCAGACTGTTAGC

BS12835.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-PA 1125 CG11377-RA 378..1125 764..17 3740 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-RA 1583 CG11377-RA 457..1204 764..17 3740 100 Minus
CG11377-RB 1221 CG11377-RB 457..956 764..265 2500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 103005..103434 694..265 2150 100 Minus
2L 23513712 2L 103515..103763 265..17 1245 100 Minus
2L 23513712 2L 102836..102907 764..693 360 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:59:47 has no hits.

BS12835.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:02 Download gff for BS12835.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-PA 378..1125 17..764 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:48 Download gff for BS12835.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 457..1204 17..764 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:21 Download gff for BS12835.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 457..1204 17..764 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:21 Download gff for BS12835.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 102836..102906 694..764 100 -> Minus
2L 103006..103434 265..693 100 -> Minus
2L 103516..103763 17..264 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:48 Download gff for BS12835.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 103006..103434 265..693 100 -> Minus
arm_2L 102836..102906 694..764 100 -> Minus
arm_2L 103516..103763 17..264 100   Minus

BS12835.5prime Sequence

890 bp (710 high quality bases) assembled on 2006-10-13

> BS12835.5prime
GAAGTTATCAGTCGACATGAGAATCAAGTATTGTTGGCTCGCAACGCTAG
TATTCATAGCCGCTGCTTCGGCGTCATATTCTCCCGAAAAGCCTGTTCCG
CCGCCCTGCAGGGCATGTACCCAGCTTGTTAGCTCTTTCAGGGCAGGACT
CGAAAGGACAAAACGCGGACACGCGGGCGGGGACACGGCATGGGAGGAGG
AAAAGTTGCGTTCGTACAAGAACAGCGAGGTACGGCTAGTGGAGATCCAG
GAGAAGCTATGTTCGGAAGGAGAAGTGATAAACAAGGATCACTGCCACAA
CCTGGCTAACGAGCACGAGGCGCTTCTCGAGGACTGGTTTATCCACAAAC
AAACAGAGAGTCCCGACCTGCAGTCATGGCTTTGCATCGATCAGCTAACA
GTCTGCTGTCCGCTGAACACCTACGGACCAGACTGCCTGACCTGCACCGA
GTGCAATGGAAATGGAAAATGCAAAGGAGACGGAACTAGAAAGGGTAACG
GAAAGTGCAAATGTGATCCCGGCTATGCGGGTCCAAACTGCAACGAATGT
GGACCGGAGCACTACGAATCATTCCGTGACGAAAAGAAATTGCTGTGTAC
ACAGTGCCATGCGGCCTGTGGGGAAGGAGGCTGCACGGGAGGTGGTCCCA
AGAGCTGCCGCAAGTGTAAGAAGGGCTGGAGCATGGACTCGGAGGCAGGA
TGTGTCGACATTAATGAGTGCTTGGAGCAACAGCGTCCAAACCCTTGCCG
ACCACAGCAGTTCTGCGTGAACAATGAGGGCTCTTTTAGTTGCCTGGAGT
GTGATCGATCTTGCGATGGATGCGATGGTGATGGCCCTGACATGTGGCAG
AAGTGTGCGGATGGCTATGAGTTGAAGAAAGAAAGTGTCA

BS12835.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-PA 1125 CG11377-RA 1..830 17..846 4125 99.8 Plus
CG11377-PA 1125 CG11377-RA 834..861 850..877 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-RB 1221 CG11377-RB 80..954 17..890 4275 99.4 Plus
CG11377-RA 1583 CG11377-RA 80..954 17..890 4275 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 102459..102907 17..465 2245 100 Plus
2L 23513712 2L 103005..103422 464..881 2015 98.8 Plus
Blast to na_te.dros performed on 2015-02-02 18:30:05 has no hits.

BS12835.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:03 Download gff for BS12835.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-PA 1..874 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:43 Download gff for BS12835.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 80..953 17..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:55 Download gff for BS12835.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 80..953 17..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:55 Download gff for BS12835.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 102459..102906 17..464 100 -> Plus
2L 103006..103431 465..889 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:43 Download gff for BS12835.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 102459..102906 17..464 100 -> Plus
arm_2L 103006..103431 465..889 98   Plus

BS12835.complete Sequence

1157 bp assembled on 2006-11-01

GenBank Submission: FJ637311

> BS12835.complete
GAAGTTATCAGTCGACATGAGAATCAAGTATTGTTGGCTCGCAACGCTAG
TATTCATAGCCGCTGCTTCGGCGTCATATTCTCCCGAAAAGCCTGTTCCG
CCGCCCTGCAGGGCATGTACCCAGCTTGTTAGCTCTTTCAGGGCAGGACT
CGAAAGGACAAAACGCGGACACGCGGGCGGGGACACGGCATGGGAGGAGG
AAAAGTTGCGTTCGTACAAGAACAGCGAGGTACGGCTAGTGGAGATCCAG
GAGAAGCTATGTTCGGAAGGAGAAGTGATAAACAAGGATCACTGCCACAA
CCTGGCTAACGAGCACGAGGCGCTTCTCGAGGACTGGTTTATCCACAAAC
AAACAGAGAGTCCCGACCTGCAGTCATGGCTTTGCATCGATCAGCTAACA
GTCTGCTGTCCGCTGAACACCTACGGACCAGACTGCCTGACCTGCACCGA
GTGCAATGGAAATGGAAAATGCAAAGGAGACGGAACTAGAAAGGGTAACG
GAAAGTGCAAATGTGATCCCGGCTATGCGGGTCCAAACTGCAACGAATGT
GGACCGGAGCACTACGAATCATTCCGTGACGAAAAGAAATTGCTGTGTAC
ACAGTGCCATGCGGCCTGTGGGGAAGGAGGCTGCACGGGAGGTGGTCCCA
AGAGCTGCCGCAAGTGTAAGAAGGGCTGGAGCATGGACTCGGAGGCAGGA
TGTGTCGACATTAATGAGTGCTTGGAGCAACAGCGTCCAAACCCTTGCCG
ACCACAGCAGTTCTGCGTGAACAATGAGGGCTCCTTTAGTTGCCTGGAGT
GTGATCGATCTTGCGATGGATGCGATGGTGATGGCCCTGACATGTGCAGG
AAGTGTGCGGATGGCTATGAGTTGAAGGAAGGAAAGTGTCATGATATTTC
TGCGGAGCAACGCAGCAACTACGTAAGCTTTACGCGAATGCTCACCTACT
TCGGAATGTGCGTGGCCACCTGTGTCATCTTCCAGAGCTCTACTCATATT
GCCTGGGGTTGCATTGTTGGGGCGGCAGTGGCAGGGTACATTGCTGTTTC
CGAGTACTGGATCAACTCGGAGGCAGGAGGCGGCCACCAACCCGAAATAG
ATACAAAACAGTTGGAGGAACTAATAATGAAGTCTTTATAAAAGCTTTCT
AGACCAT

BS12835.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-RA 1125 CG11377-PA 1..1125 17..1141 5625 100 Plus
CG11377-RB 936 CG11377-PB 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-RA 1583 CG11377-RA 80..1204 17..1141 5625 100 Plus
CG11377-RB 1221 CG11377-RB 80..956 17..893 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 102459..102907 17..465 2245 100 Plus
2L 23513712 2L 103005..103434 464..893 2150 100 Plus
2L 23513712 2L 103515..103763 893..1141 1245 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:57:18 has no hits.

BS12835.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:57 Download gff for BS12835.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 1..1125 17..1141 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:10 Download gff for BS12835.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 78..1202 17..1141 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:49 Download gff for BS12835.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 80..1202 17..1139 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:57 Download gff for BS12835.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 78..1202 17..1141 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:55 Download gff for BS12835.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 80..1202 17..1139 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:55 Download gff for BS12835.complete
Subject Subject Range Query Range Percent Splice Strand
2L 102459..102906 17..464 100 -> Plus
2L 103006..103434 465..893 100 -> Plus
2L 103516..103761 894..1139 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:49 Download gff for BS12835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 102459..102906 17..464 100 -> Plus
arm_2L 103006..103434 465..893 100 -> Plus
arm_2L 103516..103761 894..1139 100   Plus

BS12835.pep Sequence

Translation from 16 to 1140

> BS12835.pep
MRIKYCWLATLVFIAAASASYSPEKPVPPPCRACTQLVSSFRAGLERTKR
GHAGGDTAWEEEKLRSYKNSEVRLVEIQEKLCSEGEVINKDHCHNLANEH
EALLEDWFIHKQTESPDLQSWLCIDQLTVCCPLNTYGPDCLTCTECNGNG
KCKGDGTRKGNGKCKCDPGYAGPNCNECGPEHYESFRDEKKLLCTQCHAA
CGEGGCTGGGPKSCRKCKKGWSMDSEAGCVDINECLEQQRPNPCRPQQFC
VNNEGSFSCLECDRSCDGCDGDGPDMCRKCADGYELKEGKCHDISAEQRS
NYVSFTRMLTYFGMCVATCVIFQSSTHIAWGCIVGAAVAGYIAVSEYWIN
SEAGGGHQPEIDTKQLEELIMKSL*

BS12835.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-PA 374 CG11377-PA 1..374 1..374 2119 100 Plus
CG11377-PB 311 CG11377-PB 1..292 1..292 1689 100 Plus