Clone Sequence Records
BS12836.3prime Sequence
792 bp (733 high quality bases) assembled on 2006-10-13
> BS12836.3prime
ATGGTCTAGAAAGCTTTCAATTAGGCATGCCCACGCCCTGCTGGAACCCT
AACGTATCATGCTGCTTCTTCACCTCGTCCTGCATTTCTAGGGCCAGCTT
CTTGTACTTCTCCGCTTCCTTTTCGTTCTTCTCGATCCCATCGCCCCGGG
CGTACATCTGGCTAAGATTGGCACACGCATACATATTGCGAAGCTCGCAA
GCCTTGTGGGCAAACTGGAAAGCCTTCTTCATGTCTTTTAGAACAATATA
GTCGGAGTCCTTTAAAGGCGGTTGTCCGGCGGGGGGTGATGATGTACCAC
TTCCGGAGGATGCAGTGACAGCACTCTGATCCGCCTTCTTTTGCACGCCC
GAGATGTGCATCCCGGAGAGATAAAAGCAGGCAGTGGCGTTGTTCAAGTC
GCAGCTTTTGGTCAGAAACTCCAGGCCCTTGGGCACATTCCAGTCGATCT
CCCTAGGCATGGACTTTGAAACGAGCAGCAGGCCGGAGTGAAGACAGGCG
TCCGAGTCGTTTAAGTTACAGCCCTTCTCGTAGTACTCGTAGGCCACTTG
TGGATTCCCCTTGCTACCGCTCTTGCCTTTTCCAAGGAAACTGTAGTTGC
CGTATTTGTAGCAAGACTTTGCGTAACCCATAGTCGTCGCAAGTCGACTT
GTACACCTTGGAGGCCTTTTCAAAGTCTTTCTTGATGCCCTCCAAGTAGT
CGCCCAGCAAGTGGCACGCTTCCGGCTTCTTCTCGGAATAGCACCCGAAT
CGATATTCCCCGCCCAGCTTTTCTACGTACTCCTTCACGTCT
BS12836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-PA | 801 | CG13865-RA | 190..801 | 628..17 | 3035 | 99.8 | Minus |
CG13865-PB | 441 | CG13865-RB | 190..391 | 628..427 | 985 | 99.5 | Minus |
CG13865-PA | 801 | CG13865-RA | 27..191 | 792..628 | 800 | 99.3 | Minus |
CG13865-PB | 441 | CG13865-RB | 27..191 | 792..628 | 800 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-RC | 2611 | CG13865-RC | 114..888 | 792..17 | 3825 | 99.6 | Minus |
CG13865-RA | 1194 | CG13865-RA | 114..888 | 792..17 | 3825 | 99.6 | Minus |
CG13865-RB | 635 | CG13865-RB | 114..478 | 792..427 | 1775 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23014451..23014863 | 429..17 | 2065 | 100 | Minus |
X | 23542271 | X | 23013817..23014109 | 720..427 | 1405 | 99.3 | Minus |
X | 23542271 | X | 23013608..23013681 | 792..719 | 355 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:41:58 has no hits.
BS12836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:03 Download gff for
BS12836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-PA | 27..801 | 17..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:33 Download gff for
BS12836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 114..896 | 11..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:36 Download gff for
BS12836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 114..896 | 11..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:36 Download gff for
BS12836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23013608..23013681 | 719..792 | 98 | -> | Minus |
X | 23013819..23014108 | 428..718 | 99 | -> | Minus |
X | 23014453..23014871 | 11..427 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:33 Download gff for
BS12836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22415444..22415517 | 719..792 | 98 | -> | Minus |
arm_X | 22415655..22415944 | 428..718 | 99 | -> | Minus |
arm_X | 22416289..22416707 | 11..427 | 99 | | Minus |
BS12836.5prime Sequence
831 bp (785 high quality bases) assembled on 2006-10-13
> BS12836.5prime
GAAGTTATCAGTCGACATGGCCTATGACTTGAAGAAGGAGTCAGACGTGA
AGGAGTACGTAGAAAAGCTGGGCGTGGAATATCGATTCGGGTGCTATTCC
GAGAAGAAGCCGGAAGCGTGCCACTTGCTGGGCGACTACTTGGAGGGCAT
CAAGAAAGACTTTGAAAAGGCCTCCAAGGTGTACAAGTCGACTTGCGACG
ACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTTTCCTT
GGAAAAGGCAAGAGCGGTAGCAAGGGGAATCCACAAGTGGCCTACGAGTA
CTACGAGAAGGGCTGTAACTTAAACGACTCGGACGCCTGTCTTCACTCCG
GCCTGCTGCTCGTTTCAAAGTCCATGCCTAGGGAGATCGACTGGAATGTG
CCCAAGGGCCTGGAGTTTCTGACCAAAAGCTGCGACTTGAACAACGCCAC
TGCCTGCTTTTATCTCTCCGGGATGCACATCTCGGGCGTGCAAAAGAAGG
CGGATCAGAGTGCTGTCACTGCATCCTCCGGAAGTGGTACATCATCACCC
CCCGCCGGACAACCGCCTTTAAAGGACTCCGACTATATTGTTCTAAAAGA
CATGAAGAAGGCTTTCCAGTTTGCCCACAAGGCTTGCGAGCTTCGCAATA
TGTATGCGTGTGCCAATCTTAGCCAGATGTACGCCCGGGGCGATGGGATC
GAGAAGAACGAAAAGGAAGCGGAGAAGTACAAGAAGCTGGCCCTAGAAAT
GCANGACGAGGTGAAGAAGCAGCATGATACGTTAGGGTTCCAGCAGGGCG
TGGGCATGCCTAATTGAAAGCTTTCTAGACC
BS12836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-PA | 801 | CG13865-RA | 1..801 | 17..817 | 3986 | 99.8 | Plus |
CG13865-PB | 441 | CG13865-RB | 1..391 | 17..407 | 1955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-RC | 2611 | CG13865-RC | 87..888 | 16..817 | 3999 | 99.9 | Plus |
CG13865-RA | 1194 | CG13865-RA | 87..888 | 16..817 | 3999 | 99.9 | Plus |
CG13865-RB | 635 | CG13865-RB | 87..478 | 16..407 | 1960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23014451..23014863 | 405..817 | 2054 | 99.8 | Plus |
X | 23542271 | X | 23013817..23014109 | 115..407 | 1465 | 100 | Plus |
X | 23542271 | X | 23013581..23013681 | 16..116 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:58:29 has no hits.
BS12836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:04 Download gff for
BS12836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:48 Download gff for
BS12836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 87..896 | 16..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:53 Download gff for
BS12836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 87..896 | 16..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:53 Download gff for
BS12836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23013581..23013681 | 16..116 | 100 | -> | Plus |
X | 23013819..23014108 | 117..406 | 100 | -> | Plus |
X | 23014453..23014871 | 407..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:48 Download gff for
BS12836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22415417..22415517 | 16..116 | 100 | -> | Plus |
arm_X | 22415655..22415944 | 117..406 | 100 | -> | Plus |
arm_X | 22416289..22416707 | 407..823 | 99 | | Plus |
BS12836.complete Sequence
833 bp assembled on 2006-11-01
GenBank Submission: FJ637312
> BS12836.complete
GAAGTTATCAGTCGACATGGCCTATGACTTGAAGAAGGAGTCAGACGTGA
AGGAGTACGTAGAAAAGCTGGGCGTGGAATATCGATTCGGGTGCTATTCC
GAGAAGAAGCCGGAAGCGTGCCACTTGCTGGGCGACTACTTGGAGGGCAT
CAAGAAAGACTTTGAAAAGGCCTCCAAGGTGTACAAGTCGACTTGCGACG
ACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTTTCCTT
GGAAAAGGCAAGAGCGGTAGCAAGGGGAATCCACAAGTGGCCTACGAGTA
CTACGAGAAGGGCTGTAACTTAAACGACTCGGACGCCTGTCTTCACTCCG
GCCTGCTGCTCGTTTCAAAGTCCATGCCTAGGGAGATCGACTGGAATGTG
CCCAAGGGCCTGGAGTTTCTGACCAAAAGCTGCGACTTGAACAACGCCAC
TGCCTGCTTTTATCTCTCCGGGATGCACATCTCGGGCGTGCAAAAGAAGG
CGGATCAGAGTGCTGTCACTGCATCCTCCGGAAGTGGTACATCATCACCC
CCCGCCGGACAACCGCCTTTAAAGGACTCCGACTATATTGTTCTAAAAGA
CATGAAGAAGGCTTTCCAGTTTGCCCACAAGGCTTGCGAGCTTCGCAATA
TGTATGCGTGTGCCAATCTTAGCCAGATGTACGCCCGGGGCGATGGGATC
GAGAAGAACGAAAAGGAAGCGGAGAAGTACAAGAAGCTGGCCCTAGAAAT
GCAGGACGAGGTGAAGAAGCAGCATGATACGTTAGGGTTCCAGCAGGGCG
TGGGCATGCCTAATTGAAAGCTTTCTAGACCAT
BS12836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-RC | 801 | CG13865-PC | 1..801 | 17..817 | 4005 | 100 | Plus |
CG13865-RA | 801 | CG13865-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
CG13865-RB | 441 | CG13865-PB | 1..391 | 17..407 | 1955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-RC | 2611 | CG13865-RC | 87..888 | 16..817 | 4010 | 100 | Plus |
CG13865-RA | 1194 | CG13865-RA | 87..888 | 16..817 | 4010 | 100 | Plus |
CG13865-RB | 635 | CG13865-RB | 87..478 | 16..407 | 1960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23014451..23014863 | 405..817 | 2065 | 100 | Plus |
X | 23542271 | X | 23013817..23014109 | 115..407 | 1465 | 100 | Plus |
X | 23542271 | X | 23013581..23013681 | 16..116 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:02:55 has no hits.
BS12836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:45 Download gff for
BS12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:54 Download gff for
BS12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 71..880 | 16..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:14 Download gff for
BS12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 88..887 | 17..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:45 Download gff for
BS12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 71..880 | 16..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:08 Download gff for
BS12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 88..887 | 17..816 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:08 Download gff for
BS12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23013582..23013681 | 17..116 | 100 | -> | Plus |
X | 23013819..23014108 | 117..406 | 100 | -> | Plus |
X | 23014453..23014862 | 407..816 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:14 Download gff for
BS12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22415418..22415517 | 17..116 | 100 | -> | Plus |
arm_X | 22415655..22415944 | 117..406 | 100 | -> | Plus |
arm_X | 22416289..22416698 | 407..816 | 100 | | Plus |
BS12836.pep Sequence
Translation from 16 to 816
> BS12836.pep
MAYDLKKESDVKEYVEKLGVEYRFGCYSEKKPEACHLLGDYLEGIKKDFE
KASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGC
NLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYL
SGMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAF
QFAHKACELRNMYACANLSQMYARGDGIEKNEKEAEKYKKLALEMQDEVK
KQHDTLGFQQGVGMPN*
BS12836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-PC | 266 | CG13865-PC | 1..266 | 1..266 | 1424 | 100 | Plus |
CG13865-PA | 266 | CG13865-PA | 1..266 | 1..266 | 1424 | 100 | Plus |
CG13865-PB | 146 | CG13865-PB | 1..130 | 1..130 | 713 | 100 | Plus |