Clone BS12836 Report

Search the DGRC for BS12836

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG13865-RA
Protein status:BS12836.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12836.3prime Sequence

792 bp (733 high quality bases) assembled on 2006-10-13

> BS12836.3prime
ATGGTCTAGAAAGCTTTCAATTAGGCATGCCCACGCCCTGCTGGAACCCT
AACGTATCATGCTGCTTCTTCACCTCGTCCTGCATTTCTAGGGCCAGCTT
CTTGTACTTCTCCGCTTCCTTTTCGTTCTTCTCGATCCCATCGCCCCGGG
CGTACATCTGGCTAAGATTGGCACACGCATACATATTGCGAAGCTCGCAA
GCCTTGTGGGCAAACTGGAAAGCCTTCTTCATGTCTTTTAGAACAATATA
GTCGGAGTCCTTTAAAGGCGGTTGTCCGGCGGGGGGTGATGATGTACCAC
TTCCGGAGGATGCAGTGACAGCACTCTGATCCGCCTTCTTTTGCACGCCC
GAGATGTGCATCCCGGAGAGATAAAAGCAGGCAGTGGCGTTGTTCAAGTC
GCAGCTTTTGGTCAGAAACTCCAGGCCCTTGGGCACATTCCAGTCGATCT
CCCTAGGCATGGACTTTGAAACGAGCAGCAGGCCGGAGTGAAGACAGGCG
TCCGAGTCGTTTAAGTTACAGCCCTTCTCGTAGTACTCGTAGGCCACTTG
TGGATTCCCCTTGCTACCGCTCTTGCCTTTTCCAAGGAAACTGTAGTTGC
CGTATTTGTAGCAAGACTTTGCGTAACCCATAGTCGTCGCAAGTCGACTT
GTACACCTTGGAGGCCTTTTCAAAGTCTTTCTTGATGCCCTCCAAGTAGT
CGCCCAGCAAGTGGCACGCTTCCGGCTTCTTCTCGGAATAGCACCCGAAT
CGATATTCCCCGCCCAGCTTTTCTACGTACTCCTTCACGTCT

BS12836.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-PA 801 CG13865-RA 190..801 628..17 3035 99.8 Minus
CG13865-PB 441 CG13865-RB 190..391 628..427 985 99.5 Minus
CG13865-PA 801 CG13865-RA 27..191 792..628 800 99.3 Minus
CG13865-PB 441 CG13865-RB 27..191 792..628 800 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-RC 2611 CG13865-RC 114..888 792..17 3825 99.6 Minus
CG13865-RA 1194 CG13865-RA 114..888 792..17 3825 99.6 Minus
CG13865-RB 635 CG13865-RB 114..478 792..427 1775 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23014451..23014863 429..17 2065 100 Minus
X 23542271 X 23013817..23014109 720..427 1405 99.3 Minus
X 23542271 X 23013608..23013681 792..719 355 98.6 Minus
Blast to na_te.dros performed on 2015-02-10 21:41:58 has no hits.

BS12836.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:03 Download gff for BS12836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-PA 27..801 17..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:33 Download gff for BS12836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 114..896 11..792 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:36 Download gff for BS12836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 114..896 11..792 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:36 Download gff for BS12836.3prime
Subject Subject Range Query Range Percent Splice Strand
X 23013608..23013681 719..792 98 -> Minus
X 23013819..23014108 428..718 99 -> Minus
X 23014453..23014871 11..427 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:33 Download gff for BS12836.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 22415444..22415517 719..792 98 -> Minus
arm_X 22415655..22415944 428..718 99 -> Minus
arm_X 22416289..22416707 11..427 99   Minus

BS12836.5prime Sequence

831 bp (785 high quality bases) assembled on 2006-10-13

> BS12836.5prime
GAAGTTATCAGTCGACATGGCCTATGACTTGAAGAAGGAGTCAGACGTGA
AGGAGTACGTAGAAAAGCTGGGCGTGGAATATCGATTCGGGTGCTATTCC
GAGAAGAAGCCGGAAGCGTGCCACTTGCTGGGCGACTACTTGGAGGGCAT
CAAGAAAGACTTTGAAAAGGCCTCCAAGGTGTACAAGTCGACTTGCGACG
ACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTTTCCTT
GGAAAAGGCAAGAGCGGTAGCAAGGGGAATCCACAAGTGGCCTACGAGTA
CTACGAGAAGGGCTGTAACTTAAACGACTCGGACGCCTGTCTTCACTCCG
GCCTGCTGCTCGTTTCAAAGTCCATGCCTAGGGAGATCGACTGGAATGTG
CCCAAGGGCCTGGAGTTTCTGACCAAAAGCTGCGACTTGAACAACGCCAC
TGCCTGCTTTTATCTCTCCGGGATGCACATCTCGGGCGTGCAAAAGAAGG
CGGATCAGAGTGCTGTCACTGCATCCTCCGGAAGTGGTACATCATCACCC
CCCGCCGGACAACCGCCTTTAAAGGACTCCGACTATATTGTTCTAAAAGA
CATGAAGAAGGCTTTCCAGTTTGCCCACAAGGCTTGCGAGCTTCGCAATA
TGTATGCGTGTGCCAATCTTAGCCAGATGTACGCCCGGGGCGATGGGATC
GAGAAGAACGAAAAGGAAGCGGAGAAGTACAAGAAGCTGGCCCTAGAAAT
GCANGACGAGGTGAAGAAGCAGCATGATACGTTAGGGTTCCAGCAGGGCG
TGGGCATGCCTAATTGAAAGCTTTCTAGACC

BS12836.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-PA 801 CG13865-RA 1..801 17..817 3986 99.8 Plus
CG13865-PB 441 CG13865-RB 1..391 17..407 1955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-RC 2611 CG13865-RC 87..888 16..817 3999 99.9 Plus
CG13865-RA 1194 CG13865-RA 87..888 16..817 3999 99.9 Plus
CG13865-RB 635 CG13865-RB 87..478 16..407 1960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23014451..23014863 405..817 2054 99.8 Plus
X 23542271 X 23013817..23014109 115..407 1465 100 Plus
X 23542271 X 23013581..23013681 16..116 505 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:58:29 has no hits.

BS12836.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:04 Download gff for BS12836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:48 Download gff for BS12836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 87..896 16..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:53 Download gff for BS12836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 87..896 16..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:53 Download gff for BS12836.5prime
Subject Subject Range Query Range Percent Splice Strand
X 23013581..23013681 16..116 100 -> Plus
X 23013819..23014108 117..406 100 -> Plus
X 23014453..23014871 407..823 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:48 Download gff for BS12836.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 22415417..22415517 16..116 100 -> Plus
arm_X 22415655..22415944 117..406 100 -> Plus
arm_X 22416289..22416707 407..823 99   Plus

BS12836.complete Sequence

833 bp assembled on 2006-11-01

GenBank Submission: FJ637312

> BS12836.complete
GAAGTTATCAGTCGACATGGCCTATGACTTGAAGAAGGAGTCAGACGTGA
AGGAGTACGTAGAAAAGCTGGGCGTGGAATATCGATTCGGGTGCTATTCC
GAGAAGAAGCCGGAAGCGTGCCACTTGCTGGGCGACTACTTGGAGGGCAT
CAAGAAAGACTTTGAAAAGGCCTCCAAGGTGTACAAGTCGACTTGCGACG
ACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTTTCCTT
GGAAAAGGCAAGAGCGGTAGCAAGGGGAATCCACAAGTGGCCTACGAGTA
CTACGAGAAGGGCTGTAACTTAAACGACTCGGACGCCTGTCTTCACTCCG
GCCTGCTGCTCGTTTCAAAGTCCATGCCTAGGGAGATCGACTGGAATGTG
CCCAAGGGCCTGGAGTTTCTGACCAAAAGCTGCGACTTGAACAACGCCAC
TGCCTGCTTTTATCTCTCCGGGATGCACATCTCGGGCGTGCAAAAGAAGG
CGGATCAGAGTGCTGTCACTGCATCCTCCGGAAGTGGTACATCATCACCC
CCCGCCGGACAACCGCCTTTAAAGGACTCCGACTATATTGTTCTAAAAGA
CATGAAGAAGGCTTTCCAGTTTGCCCACAAGGCTTGCGAGCTTCGCAATA
TGTATGCGTGTGCCAATCTTAGCCAGATGTACGCCCGGGGCGATGGGATC
GAGAAGAACGAAAAGGAAGCGGAGAAGTACAAGAAGCTGGCCCTAGAAAT
GCAGGACGAGGTGAAGAAGCAGCATGATACGTTAGGGTTCCAGCAGGGCG
TGGGCATGCCTAATTGAAAGCTTTCTAGACCAT

BS12836.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-RC 801 CG13865-PC 1..801 17..817 4005 100 Plus
CG13865-RA 801 CG13865-PA 1..801 17..817 4005 100 Plus
CG13865-RB 441 CG13865-PB 1..391 17..407 1955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-RC 2611 CG13865-RC 87..888 16..817 4010 100 Plus
CG13865-RA 1194 CG13865-RA 87..888 16..817 4010 100 Plus
CG13865-RB 635 CG13865-RB 87..478 16..407 1960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23014451..23014863 405..817 2065 100 Plus
X 23542271 X 23013817..23014109 115..407 1465 100 Plus
X 23542271 X 23013581..23013681 16..116 505 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:02:55 has no hits.

BS12836.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:45 Download gff for BS12836.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:54 Download gff for BS12836.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 71..880 16..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:14 Download gff for BS12836.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 88..887 17..816 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:45 Download gff for BS12836.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 71..880 16..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:08 Download gff for BS12836.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 88..887 17..816 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:08 Download gff for BS12836.complete
Subject Subject Range Query Range Percent Splice Strand
X 23013582..23013681 17..116 100 -> Plus
X 23013819..23014108 117..406 100 -> Plus
X 23014453..23014862 407..816 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:14 Download gff for BS12836.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22415418..22415517 17..116 100 -> Plus
arm_X 22415655..22415944 117..406 100 -> Plus
arm_X 22416289..22416698 407..816 100   Plus

BS12836.pep Sequence

Translation from 16 to 816

> BS12836.pep
MAYDLKKESDVKEYVEKLGVEYRFGCYSEKKPEACHLLGDYLEGIKKDFE
KASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGC
NLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYL
SGMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAF
QFAHKACELRNMYACANLSQMYARGDGIEKNEKEAEKYKKLALEMQDEVK
KQHDTLGFQQGVGMPN*

BS12836.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-PC 266 CG13865-PC 1..266 1..266 1424 100 Plus
CG13865-PA 266 CG13865-PA 1..266 1..266 1424 100 Plus
CG13865-PB 146 CG13865-PB 1..130 1..130 713 100 Plus