Clone BS12838 Report

Search the DGRC for BS12838

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG5096-RA
Protein status:BS12838.pep: full length peptide match
Sequenced Size:1508

Clone Sequence Records

BS12838.complete Sequence

1508 bp assembled on 2009-12-07

GenBank Submission: KX804889

> BS12838.complete
GAAGTTATCAGTCGACATGAATTTAACAAAATCAGCTACGTTAGCTGCTG
CGATTTTTTGTATCGTTTTGAGCCAAGTTTCTGGGCAGACGAAAGATGAA
ACCACCACAACCGAGACGCCAAAGGAAAAAATCAAAGTAATTGATAGCAA
ATTGTGTAAGAAGTGCAATTGCTATATCGACACCAATTTGCTGGATTGCT
CCGAAAAACTGCAGGATTGGTTGTCCGCCGAGGACTGGGAGGATCTGACC
AACGGCAATGTTGTGTTCAAAACAATCAATCTGGAGCACAACAATCTGAC
CAGCGTGCCAATTCTGCCGAAATACGATGTGGAGAACTTGTACTTGGCTA
ACAACCAAATCGATTCAATTTCCGTGGGAGCTTTTCAGAATTTAACCGAA
CTAGTCACACTCGATTTGTCGCATAACCGATTGACTTCGAAAGTTCTGGT
ACCGGATGTTTTTAAAGGACCCTTCACTGTCCAAGATTTTGAGTCATTGG
AAAATCTAAAGACTCTTAACTTGGGATACAACGATCTGCATAGCTTGGAT
GCGGATCTGTTTGAACACATTCCCCACATTGAGGAACTCGTTCTCTGCTC
AAATAGTTTTCATGTCATCGATCAACTTTCAGAAACAGCCATTTCCGGCT
TACAATCGTTGAAGATCTTGGATGTCTCTTATATGGAAATCGATGACTTG
CCGGATACAATTCTACATGGTCCCCGAGATCTTGAGATCTTTATAGCAGC
TGGCAATCTGTTTAATCAATTGCCAAAGGCCCTGAAATATGCGACGAACT
TGACCAGCCTGGTCTTAAACGAAAATCCCATCGAAAATTTGATTGGCGAC
AATGTATTTCCACCTTTGACCAAATTGACCCACCTCAGCATGACTTTTAT
GTCCAAGTTGTACAAAATTGGGCCAGGAGCATTTAGTGAACTGCAAAGTT
TAACTGAACTGATATTGTCCGACAACAAACTGCTAAATGAAATTGATGAG
GAGGCTCTATCCAAGAACGTAACTGGTGGCCAGTACTTGGACTACCCGCC
ATTGGAAAAGGTTTACTTGAATAATTGCAACGTGTCGACTTTGCCGAAAG
AACTACTAGTGCGCTGGGATAAACTTAAGGCTCTGGATCTTAGATTCAAC
CCGTGGAATTGCGACGAATCCAATGACTTCTTGATCAACGTCTTGATAGA
TCGAATCAACAAGACCACGCCCGTTCTGGCCAAAGATGTCAAATGTGGCG
GTCCGAACAAGTTAAACGATGTTACGCTGCTCAGAGTGGCGAATGAACAT
ATGATAGAAAGTTCGACGGGCAGTCTTATATGGGTTGGACTCTTGGTTGT
CCTGCTCATCGCGGTGCCGACCATCATTGGTGCTTACGTGATGAAGAGGC
GCGGCTGCTTTGGCGTCTTTAGACGTCATGACAGCGGTGCTAGCAGTGCT
CTCTATAATAGGACTAGTTTCAACGAGGATTTCCATATTTAAAAGCTTTC
TAGACCAT

BS12838.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-RA 1476 CG5096-PA 1..1476 17..1492 7380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-RA 1649 CG5096-RA 78..1553 17..1492 7380 100 Plus
gny-RA 2557 CG5091-RA 2033..2141 17..125 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10383005..10383546 123..664 2710 100 Plus
2L 23513712 2L 10384194..10384627 1059..1492 2170 100 Plus
2L 23513712 2L 10383605..10383801 656..852 955 99 Plus
2L 23513712 2L 10384025..10384139 948..1062 575 100 Plus
2L 23513712 2L 10382340..10382448 17..125 545 100 Plus
2L 23513712 2L 10383867..10383963 853..949 485 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:20:18 has no hits.

BS12838.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:30 Download gff for BS12838.complete
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 88..1561 17..1490 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:48 Download gff for BS12838.complete
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 78..1551 17..1490 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:27 Download gff for BS12838.complete
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 88..1561 17..1490 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:14 Download gff for BS12838.complete
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 78..1551 17..1490 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:14 Download gff for BS12838.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10382340..10382447 17..124 100 -> Plus
2L 10383007..10383546 125..664 100 -> Plus
2L 10383614..10383801 665..852 100 -> Plus
2L 10383867..10383961 853..947 100 -> Plus
2L 10384025..10384137 948..1060 100 -> Plus
2L 10384196..10384625 1061..1490 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:48 Download gff for BS12838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10382340..10382447 17..124 100 -> Plus
arm_2L 10383007..10383546 125..664 100 -> Plus
arm_2L 10383614..10383801 665..852 100 -> Plus
arm_2L 10383867..10383961 853..947 100 -> Plus
arm_2L 10384025..10384137 948..1060 100 -> Plus
arm_2L 10384196..10384625 1061..1490 100   Plus

BS12838.3prime Sequence

768 bp (587 high quality bases) assembled on 2006-10-13

> BS12838.3prime
ATGGTCTAGAAAGCTTTTAAATATGGAAATCCTCGTTGAAACTAGTCCTA
TTATAGAGAGCACTGCTAGCACCGCTGTCATGACGTCTAAAGACGCCAAA
GCAGCCGCGCCTCTTCATCACGTAAGCACCAATGATGGTCGGCACCGCGA
TGAGCAGGACAACCAAGAGTCCAACCCATATAAGACTGCCCGTCGAACTT
TCTATCATATGTTCATTCGCCACTCTGAGCAGCGTAACATCGTTTAACTT
GTTCGGACCGCCACATTTGACATCTTTGGCCAGAACGGGCGTGGTCTTGT
TGATTCGATCTATCAAGACGTTGATCAAGAAGTCATTGGATTCGTCGCAA
TTCCACGGGTTGAATCTAAGATCCAGAGCCTTAAGTTTATCCCAGCGCAC
TAGTAGTTCTTTCGGCAAAGTCGACACGTTGCAATTATTCAAGTAAACCT
TTTCCAATGGCGGGTAGTCCAAGTACTGGCCACCAGTTACGTTCTTGGAT
AGAGCCTCCTCATCAATTTCATTTAGCAGTTTGTTGTCGGACAATATCAG
TTCAGTTAAACTTTGCAGTTCACTAAATGCTCCTGGCCCAATTTTGTACA
ACTTGGACATAAAAGTCATGCTGAGGTGGGTCAATTTGGTCAAAGGTGGA
AATACATTGTCGCCAATCAAATTTTCGATGGGAATTTCGTTTAAGACCAG
GCTGGTCAAGTTCGTCGCATATTTCAGGGCCTTTGGCAATTGAATTAACA
GATTGCCAGCTGCTATAA

BS12838.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-PA 1476 CG5096-RA 725..1476 768..17 3685 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-RA 1649 CG5096-RA 802..1553 768..17 3715 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10384194..10384627 450..17 2170 100 Minus
2L 23513712 2L 10384025..10384139 561..447 575 100 Minus
2L 23513712 2L 10383690..10383801 768..657 515 97.3 Minus
2L 23513712 2L 10383867..10383963 656..560 485 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:55:36 has no hits.

BS12838.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:05 Download gff for BS12838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-PA 727..1476 17..766 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:59:55 Download gff for BS12838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 802..1559 8..768 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:33:02 Download gff for BS12838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 802..1559 8..768 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:33:02 Download gff for BS12838.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10383690..10383801 657..768 97 -> Minus
2L 10383867..10383961 562..656 100 -> Minus
2L 10384025..10384137 449..561 100 -> Minus
2L 10384196..10384633 8..448 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:59:55 Download gff for BS12838.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10383690..10383801 657..768 97 -> Minus
arm_2L 10383867..10383961 562..656 100 -> Minus
arm_2L 10384025..10384137 449..561 100 -> Minus
arm_2L 10384196..10384633 8..448 99   Minus

BS12838.5prime Sequence

791 bp (774 high quality bases) assembled on 2006-10-13

> BS12838.5prime
GAAGTTATCACTCGACATGAATTTAACAAAATCAGCTACGTTAGCTGCTG
CGATTTTTTGTATCGTTTTGAGCCAAGTTTCTGGGCAGACGAAAGATGAA
ACCACCACAACCGAGACGCCAAAGGAAAAAATCAAAGTAATTGATAGCAA
ATTGTGTAAGAAGTGCAATTGCTATATCGACACCAATTTGCTGGATTGCT
CCGAAAAACTGCAGGATTGGTTGTCCGCCGAGGACTGGGAGGATCTGACC
AACGGCAATGTTGTGTTCAAAACAATCAATCTGGAGCACAACAATCTGAC
CAGCGTGCCAATTCTGCCGAAATACGATGTGGAGAACTTGTACTTGGCTA
ACAACCAAATCGATTCAATTTCCGTGGGAGCTTTTCAGAATTTAACCGAA
CTAGTCACACTCGATTTGTCGCATAACCGATTGACTTCGAAAGTTCTGGT
ACCGGATGTTTTTAAAGGACCCTTCACTGTCCAAGATTTTGAGTCATTGG
AAAATCTAAAGACTCTTAACTTGGGATACAACGATCTGCATAGCTTGGAT
GCGGATCTGTTTGAACACATTCCCCACATTGAGGAACTCGTTCTCTGCTC
AAATAGTTTTCATGTCATCGATCAACTTTCAGAAACAGCCATTTCCGGCT
TACAATCGTTGAAGATCTTGGATGTCTCTTATATGGAAATCGATGACTTG
CCGGATACAATTCTACATGGTCCCCGAGATCTTGAGATCTTTATAGCAGC
TGGCAATCTGTTTAATCAATTGCCAAAGGCCCTGAAATATG

BS12838.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-PA 1476 CG5096-RA 1..775 17..791 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-RA 1649 CG5096-RA 78..852 17..791 3875 100 Plus
gny-RA 2557 CG5091-RA 2033..2141 17..125 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10383005..10383546 123..664 2710 100 Plus
2L 23513712 2L 10383605..10383740 656..791 650 98.5 Plus
2L 23513712 2L 10382340..10382448 17..125 545 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:46:59 has no hits.

BS12838.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:06 Download gff for BS12838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:39:08 Download gff for BS12838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 75..852 10..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:37 Download gff for BS12838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 75..852 10..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:37 Download gff for BS12838.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10382337..10382447 10..124 96 -> Plus
2L 10383007..10383546 125..664 100 -> Plus
2L 10383614..10383740 665..791 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:39:08 Download gff for BS12838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10382337..10382447 10..124 96 -> Plus
arm_2L 10383007..10383546 125..664 100 -> Plus
arm_2L 10383614..10383740 665..791 100   Plus

BS12838.pep Sequence

Translation from 16 to 1491

> BS12838.pep
MNLTKSATLAAAIFCIVLSQVSGQTKDETTTTETPKEKIKVIDSKLCKKC
NCYIDTNLLDCSEKLQDWLSAEDWEDLTNGNVVFKTINLEHNNLTSVPIL
PKYDVENLYLANNQIDSISVGAFQNLTELVTLDLSHNRLTSKVLVPDVFK
GPFTVQDFESLENLKTLNLGYNDLHSLDADLFEHIPHIEELVLCSNSFHV
IDQLSETAISGLQSLKILDVSYMEIDDLPDTILHGPRDLEIFIAAGNLFN
QLPKALKYATNLTSLVLNENPIENLIGDNVFPPLTKLTHLSMTFMSKLYK
IGPGAFSELQSLTELILSDNKLLNEIDEEALSKNVTGGQYLDYPPLEKVY
LNNCNVSTLPKELLVRWDKLKALDLRFNPWNCDESNDFLINVLIDRINKT
TPVLAKDVKCGGPNKLNDVTLLRVANEHMIESSTGSLIWVGLLVVLLIAV
PTIIGAYVMKRRGCFGVFRRHDSGASSALYNRTSFNEDFHI*

BS12838.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-PA 491 CG5096-PA 1..491 1..491 2539 100 Plus
caps-PB 540 CG11282-PB 83..502 38..489 255 26.8 Plus
caps-PA 540 CG11282-PA 83..502 38..489 255 26.8 Plus
CG7702-PB 537 CG7702-PB 34..385 44..382 254 25.4 Plus
CG7702-PA 537 CG7702-PA 34..385 44..382 254 25.4 Plus