Clone Sequence Records
BS12838.complete Sequence
1508 bp assembled on 2009-12-07
GenBank Submission: KX804889
> BS12838.complete
GAAGTTATCAGTCGACATGAATTTAACAAAATCAGCTACGTTAGCTGCTG
CGATTTTTTGTATCGTTTTGAGCCAAGTTTCTGGGCAGACGAAAGATGAA
ACCACCACAACCGAGACGCCAAAGGAAAAAATCAAAGTAATTGATAGCAA
ATTGTGTAAGAAGTGCAATTGCTATATCGACACCAATTTGCTGGATTGCT
CCGAAAAACTGCAGGATTGGTTGTCCGCCGAGGACTGGGAGGATCTGACC
AACGGCAATGTTGTGTTCAAAACAATCAATCTGGAGCACAACAATCTGAC
CAGCGTGCCAATTCTGCCGAAATACGATGTGGAGAACTTGTACTTGGCTA
ACAACCAAATCGATTCAATTTCCGTGGGAGCTTTTCAGAATTTAACCGAA
CTAGTCACACTCGATTTGTCGCATAACCGATTGACTTCGAAAGTTCTGGT
ACCGGATGTTTTTAAAGGACCCTTCACTGTCCAAGATTTTGAGTCATTGG
AAAATCTAAAGACTCTTAACTTGGGATACAACGATCTGCATAGCTTGGAT
GCGGATCTGTTTGAACACATTCCCCACATTGAGGAACTCGTTCTCTGCTC
AAATAGTTTTCATGTCATCGATCAACTTTCAGAAACAGCCATTTCCGGCT
TACAATCGTTGAAGATCTTGGATGTCTCTTATATGGAAATCGATGACTTG
CCGGATACAATTCTACATGGTCCCCGAGATCTTGAGATCTTTATAGCAGC
TGGCAATCTGTTTAATCAATTGCCAAAGGCCCTGAAATATGCGACGAACT
TGACCAGCCTGGTCTTAAACGAAAATCCCATCGAAAATTTGATTGGCGAC
AATGTATTTCCACCTTTGACCAAATTGACCCACCTCAGCATGACTTTTAT
GTCCAAGTTGTACAAAATTGGGCCAGGAGCATTTAGTGAACTGCAAAGTT
TAACTGAACTGATATTGTCCGACAACAAACTGCTAAATGAAATTGATGAG
GAGGCTCTATCCAAGAACGTAACTGGTGGCCAGTACTTGGACTACCCGCC
ATTGGAAAAGGTTTACTTGAATAATTGCAACGTGTCGACTTTGCCGAAAG
AACTACTAGTGCGCTGGGATAAACTTAAGGCTCTGGATCTTAGATTCAAC
CCGTGGAATTGCGACGAATCCAATGACTTCTTGATCAACGTCTTGATAGA
TCGAATCAACAAGACCACGCCCGTTCTGGCCAAAGATGTCAAATGTGGCG
GTCCGAACAAGTTAAACGATGTTACGCTGCTCAGAGTGGCGAATGAACAT
ATGATAGAAAGTTCGACGGGCAGTCTTATATGGGTTGGACTCTTGGTTGT
CCTGCTCATCGCGGTGCCGACCATCATTGGTGCTTACGTGATGAAGAGGC
GCGGCTGCTTTGGCGTCTTTAGACGTCATGACAGCGGTGCTAGCAGTGCT
CTCTATAATAGGACTAGTTTCAACGAGGATTTCCATATTTAAAAGCTTTC
TAGACCAT
BS12838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5096-RA | 1476 | CG5096-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5096-RA | 1649 | CG5096-RA | 78..1553 | 17..1492 | 7380 | 100 | Plus |
gny-RA | 2557 | CG5091-RA | 2033..2141 | 17..125 | 545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10383005..10383546 | 123..664 | 2710 | 100 | Plus |
2L | 23513712 | 2L | 10384194..10384627 | 1059..1492 | 2170 | 100 | Plus |
2L | 23513712 | 2L | 10383605..10383801 | 656..852 | 955 | 99 | Plus |
2L | 23513712 | 2L | 10384025..10384139 | 948..1062 | 575 | 100 | Plus |
2L | 23513712 | 2L | 10382340..10382448 | 17..125 | 545 | 100 | Plus |
2L | 23513712 | 2L | 10383867..10383963 | 853..949 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:20:18 has no hits.
BS12838.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:30 Download gff for
BS12838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5096-RA | 88..1561 | 17..1490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:48 Download gff for
BS12838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5096-RA | 78..1551 | 17..1490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:27 Download gff for
BS12838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5096-RA | 88..1561 | 17..1490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:14 Download gff for
BS12838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5096-RA | 78..1551 | 17..1490 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:14 Download gff for
BS12838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10382340..10382447 | 17..124 | 100 | -> | Plus |
2L | 10383007..10383546 | 125..664 | 100 | -> | Plus |
2L | 10383614..10383801 | 665..852 | 100 | -> | Plus |
2L | 10383867..10383961 | 853..947 | 100 | -> | Plus |
2L | 10384025..10384137 | 948..1060 | 100 | -> | Plus |
2L | 10384196..10384625 | 1061..1490 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:48 Download gff for
BS12838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10382340..10382447 | 17..124 | 100 | -> | Plus |
arm_2L | 10383007..10383546 | 125..664 | 100 | -> | Plus |
arm_2L | 10383614..10383801 | 665..852 | 100 | -> | Plus |
arm_2L | 10383867..10383961 | 853..947 | 100 | -> | Plus |
arm_2L | 10384025..10384137 | 948..1060 | 100 | -> | Plus |
arm_2L | 10384196..10384625 | 1061..1490 | 100 | | Plus |
BS12838.3prime Sequence
768 bp (587 high quality bases) assembled on 2006-10-13
> BS12838.3prime
ATGGTCTAGAAAGCTTTTAAATATGGAAATCCTCGTTGAAACTAGTCCTA
TTATAGAGAGCACTGCTAGCACCGCTGTCATGACGTCTAAAGACGCCAAA
GCAGCCGCGCCTCTTCATCACGTAAGCACCAATGATGGTCGGCACCGCGA
TGAGCAGGACAACCAAGAGTCCAACCCATATAAGACTGCCCGTCGAACTT
TCTATCATATGTTCATTCGCCACTCTGAGCAGCGTAACATCGTTTAACTT
GTTCGGACCGCCACATTTGACATCTTTGGCCAGAACGGGCGTGGTCTTGT
TGATTCGATCTATCAAGACGTTGATCAAGAAGTCATTGGATTCGTCGCAA
TTCCACGGGTTGAATCTAAGATCCAGAGCCTTAAGTTTATCCCAGCGCAC
TAGTAGTTCTTTCGGCAAAGTCGACACGTTGCAATTATTCAAGTAAACCT
TTTCCAATGGCGGGTAGTCCAAGTACTGGCCACCAGTTACGTTCTTGGAT
AGAGCCTCCTCATCAATTTCATTTAGCAGTTTGTTGTCGGACAATATCAG
TTCAGTTAAACTTTGCAGTTCACTAAATGCTCCTGGCCCAATTTTGTACA
ACTTGGACATAAAAGTCATGCTGAGGTGGGTCAATTTGGTCAAAGGTGGA
AATACATTGTCGCCAATCAAATTTTCGATGGGAATTTCGTTTAAGACCAG
GCTGGTCAAGTTCGTCGCATATTTCAGGGCCTTTGGCAATTGAATTAACA
GATTGCCAGCTGCTATAA
BS12838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5096-PA | 1476 | CG5096-RA | 725..1476 | 768..17 | 3685 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5096-RA | 1649 | CG5096-RA | 802..1553 | 768..17 | 3715 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10384194..10384627 | 450..17 | 2170 | 100 | Minus |
2L | 23513712 | 2L | 10384025..10384139 | 561..447 | 575 | 100 | Minus |
2L | 23513712 | 2L | 10383690..10383801 | 768..657 | 515 | 97.3 | Minus |
2L | 23513712 | 2L | 10383867..10383963 | 656..560 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:55:36 has no hits.
BS12838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:05 Download gff for
BS12838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5096-PA | 727..1476 | 17..766 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:59:55 Download gff for
BS12838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5096-RA | 802..1559 | 8..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:33:02 Download gff for
BS12838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5096-RA | 802..1559 | 8..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:33:02 Download gff for
BS12838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10383690..10383801 | 657..768 | 97 | -> | Minus |
2L | 10383867..10383961 | 562..656 | 100 | -> | Minus |
2L | 10384025..10384137 | 449..561 | 100 | -> | Minus |
2L | 10384196..10384633 | 8..448 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:59:55 Download gff for
BS12838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10383690..10383801 | 657..768 | 97 | -> | Minus |
arm_2L | 10383867..10383961 | 562..656 | 100 | -> | Minus |
arm_2L | 10384025..10384137 | 449..561 | 100 | -> | Minus |
arm_2L | 10384196..10384633 | 8..448 | 99 | | Minus |
BS12838.5prime Sequence
791 bp (774 high quality bases) assembled on 2006-10-13
> BS12838.5prime
GAAGTTATCACTCGACATGAATTTAACAAAATCAGCTACGTTAGCTGCTG
CGATTTTTTGTATCGTTTTGAGCCAAGTTTCTGGGCAGACGAAAGATGAA
ACCACCACAACCGAGACGCCAAAGGAAAAAATCAAAGTAATTGATAGCAA
ATTGTGTAAGAAGTGCAATTGCTATATCGACACCAATTTGCTGGATTGCT
CCGAAAAACTGCAGGATTGGTTGTCCGCCGAGGACTGGGAGGATCTGACC
AACGGCAATGTTGTGTTCAAAACAATCAATCTGGAGCACAACAATCTGAC
CAGCGTGCCAATTCTGCCGAAATACGATGTGGAGAACTTGTACTTGGCTA
ACAACCAAATCGATTCAATTTCCGTGGGAGCTTTTCAGAATTTAACCGAA
CTAGTCACACTCGATTTGTCGCATAACCGATTGACTTCGAAAGTTCTGGT
ACCGGATGTTTTTAAAGGACCCTTCACTGTCCAAGATTTTGAGTCATTGG
AAAATCTAAAGACTCTTAACTTGGGATACAACGATCTGCATAGCTTGGAT
GCGGATCTGTTTGAACACATTCCCCACATTGAGGAACTCGTTCTCTGCTC
AAATAGTTTTCATGTCATCGATCAACTTTCAGAAACAGCCATTTCCGGCT
TACAATCGTTGAAGATCTTGGATGTCTCTTATATGGAAATCGATGACTTG
CCGGATACAATTCTACATGGTCCCCGAGATCTTGAGATCTTTATAGCAGC
TGGCAATCTGTTTAATCAATTGCCAAAGGCCCTGAAATATG
BS12838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:54:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5096-PA | 1476 | CG5096-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5096-RA | 1649 | CG5096-RA | 78..852 | 17..791 | 3875 | 100 | Plus |
gny-RA | 2557 | CG5091-RA | 2033..2141 | 17..125 | 545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10383005..10383546 | 123..664 | 2710 | 100 | Plus |
2L | 23513712 | 2L | 10383605..10383740 | 656..791 | 650 | 98.5 | Plus |
2L | 23513712 | 2L | 10382340..10382448 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:46:59 has no hits.
BS12838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:06 Download gff for
BS12838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5096-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:39:08 Download gff for
BS12838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5096-RA | 75..852 | 10..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:37 Download gff for
BS12838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5096-RA | 75..852 | 10..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:37 Download gff for
BS12838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10382337..10382447 | 10..124 | 96 | -> | Plus |
2L | 10383007..10383546 | 125..664 | 100 | -> | Plus |
2L | 10383614..10383740 | 665..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:39:08 Download gff for
BS12838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10382337..10382447 | 10..124 | 96 | -> | Plus |
arm_2L | 10383007..10383546 | 125..664 | 100 | -> | Plus |
arm_2L | 10383614..10383740 | 665..791 | 100 | | Plus |
BS12838.pep Sequence
Translation from 16 to 1491
> BS12838.pep
MNLTKSATLAAAIFCIVLSQVSGQTKDETTTTETPKEKIKVIDSKLCKKC
NCYIDTNLLDCSEKLQDWLSAEDWEDLTNGNVVFKTINLEHNNLTSVPIL
PKYDVENLYLANNQIDSISVGAFQNLTELVTLDLSHNRLTSKVLVPDVFK
GPFTVQDFESLENLKTLNLGYNDLHSLDADLFEHIPHIEELVLCSNSFHV
IDQLSETAISGLQSLKILDVSYMEIDDLPDTILHGPRDLEIFIAAGNLFN
QLPKALKYATNLTSLVLNENPIENLIGDNVFPPLTKLTHLSMTFMSKLYK
IGPGAFSELQSLTELILSDNKLLNEIDEEALSKNVTGGQYLDYPPLEKVY
LNNCNVSTLPKELLVRWDKLKALDLRFNPWNCDESNDFLINVLIDRINKT
TPVLAKDVKCGGPNKLNDVTLLRVANEHMIESSTGSLIWVGLLVVLLIAV
PTIIGAYVMKRRGCFGVFRRHDSGASSALYNRTSFNEDFHI*
BS12838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5096-PA | 491 | CG5096-PA | 1..491 | 1..491 | 2539 | 100 | Plus |
caps-PB | 540 | CG11282-PB | 83..502 | 38..489 | 255 | 26.8 | Plus |
caps-PA | 540 | CG11282-PA | 83..502 | 38..489 | 255 | 26.8 | Plus |
CG7702-PB | 537 | CG7702-PB | 34..385 | 44..382 | 254 | 25.4 | Plus |
CG7702-PA | 537 | CG7702-PA | 34..385 | 44..382 | 254 | 25.4 | Plus |