Clone Sequence Records
BS12840.3prime Sequence
827 bp (712 high quality bases) assembled on 2006-10-13
> BS12840.3prime
ATGGTCTAGAAAGCTTTTAGACCAACAGTCCGCTGACGGAGAACTCGGGC
AGATGCGTCACCTTCTTGCGGAACTCCGGAACCTCGCAGGCGTAGGAGTA
ACCGGCGGTGATGTCCGTCTTCTTCCAGCTGATCCAGTTGATCCTGTCGC
TGACGTCCGTGCACAGGATGTAGTCCCGCTTGATCTCCTCCAAACTCAAA
TGGGGATTGTTGACGCCGATCAGAACGATGCCCTTCTTGGTGGATGGTTC
GATTACCACTCGGAAGTATAGCTTGGGAACTGGAATCAGACCGTTGCCGT
TGTTATCGTGGGACAAATAGAGTTGCCTCTGTTCCCCATTCTTGTTGGGC
AGCGTGGTAACACCCCAGACTCCCGTCCAGCACTCCACGTGCTTGTTCTC
CTTGGCCACCCAGGCACGAACTCCGTCCTCCACGCGAGCCCAGTTACCAG
CATTGAAGGTCTGCCACTGAGGAGCAGCGTTGATGAACAGGAAGGTGGCC
CTCTGCTCCGGGGCAAATACGAAGTCAGCCTTGGCACCCATGTGACCACG
GGCCAGGAAGATGTTCTTGGCCGAGTCAAAGAAACGGGATGAATCCATGT
CCAGCTCCTTGTCGATGGTCTCCTTCTGAACAGCCTGCGTGTATAGCTTG
TCCACATTCTTACCCGCGAAATAGCCGCCGGCTCCCAATGTAATGCGATC
CACTCCGGTGGCATAGTAGTTGTTTCCCGGTTCCAGGCGATGATAGACGT
TACCTGGTCACCTCCTCGTCCTCGTTGAAGCATACCTCGTACTGCGTTGC
GAATCGTGAGCCGGAGAGCTCAAAGCC
BS12840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-PA | 1272 | CG3819-RA | 463..1272 | 827..17 | 3990 | 99.7 | Minus |
CG6839-PA | 1293 | CG6839-RA | 799..881 | 508..426 | 240 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-RB | 1422 | CG3819-RB | 479..1289 | 827..16 | 4020 | 99.8 | Minus |
CG3819-RA | 1328 | CG3819-RA | 479..1289 | 827..16 | 4020 | 99.8 | Minus |
CG6839-RA | 1325 | CG6839-RA | 746..1261 | 561..46 | 715 | 76.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18920563..18921373 | 16..827 | 3995 | 99.8 | Plus |
3L | 28110227 | 3L | 18918680..18919195 | 561..46 | 690 | 75.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:46:18 has no hits.
BS12840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:06 Download gff for
BS12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-PA | 463..1272 | 17..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:18:28 Download gff for
BS12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 479..1291 | 12..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:46 Download gff for
BS12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 479..1291 | 12..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:46 Download gff for
BS12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18920560..18921373 | 14..827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:18:28 Download gff for
BS12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18913660..18914473 | 14..827 | 99 | | Plus |
BS12840.complete Sequence
1304 bp assembled on 2010-06-25
GenBank Submission: KX802287
> BS12840.complete
GAAGTTATCAGTCGACATGAAGTGCCTAGTGTTGATTGCCTTCAGTGGCC
TCTTCTTGGCCAGTGCCCAGGCCCGAATCCTTCCCGCGGAGGATCTCCCC
TGGGAGTTGCCAGAAGTTCCGGTAGCGGTCAACGAGATTGAACCCAGAGC
AGCTGGTTGTTCAATTAAGATCCGCAGCTCTGAGCTGAAGGATCCCCAGC
CTCTGCTGATTAAATCGGACACCTCTGAAATCGTTGGATTCTCGGACACC
GGCTATGTGGACGTGGACAAGGACAAGACCATCGAATTCCACTGCACCAG
CAGCCTGGCTTCCCCTCTGTCTGGAAAATCCGTGACCGCCAAGTGCGTGG
GTGGCACCACCTTCAAGATTGACGATAAGGAGCACGATCTGTCCGCCATC
AAGTGCACATCGTGGCCAGTTTTTGTGGGCAAGAAGTCCGGATCCAGCTG
CAATGGTGGCACCACGCTGATCAAGGTGGGCTTTGAGCTCTCCGGCTCAC
GATTCGCAACGCAGTACGAGGTATGCTTCAACGAGGACGAGGAGGTGACC
AGGTACGTCTATCATCGCCTGGAACCGGGAAACAACTACTATGCCACCGG
AGTGGATCGCATTACATTTGGAGCCGGCGGCTATTTCGCGGGTAAGAATG
TGGACAAGCTATACACGCAGGCTGTTCAGAAGGAGACCATCGACAAGGAG
CTGGACATGGATTCATCCCGTTTCTTTGACTCGGCCAAGAACATCTTCCT
GGCCCGTGGTCACATGGGTGCCAAGGCTGACTTCGTATTTGCCCCGGAGC
AGAGGGCCACCTTCCTGTTCATCAACGCTGCTCCTCAGTGGCAGACCTTC
AATGCTGGTAACTGGGCTCGCGTGGAGGACGGAGTTCGTGCCTGGGTGGC
CAAGGAGAACAAGCACGTGGAGTGCTGGACGGGAGTCTGGGGTGTTACCA
CGCTGCCCAACAAGAATGGGGAACAGAGGCAACTCTATTTGTCCCACGAT
AACAACGGCAACGGTCTGATTCCAGTTCCCAAGCTATACTTCCGAGTGGT
AATCGAACCATCCACCAAGAAGGGCATCGTTCTGATCGGCGTCAACAATC
CCCATTTGAGTTTGGAGGAGATCAAGCGGGACTACATCCTGTGCACGGAC
GTCAGCGACAGGATCAACTGGATCAGCTGGAAGAAGACGGACATCACCGC
CGGTTACTCCTACGCCTGCGAGGTTCCGGAGTTCCGCAAGAAGGTGACGC
ATCTGCCCGAGTTCTCCGTCAGCGGACTGTTGGTCTAAAAGCTTTCTAGA
CCAT
BS12840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-RB | 1272 | CG3819-PB | 1..1272 | 17..1288 | 6360 | 100 | Plus |
CG3819-RA | 1272 | CG3819-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
CG6839-RA | 1293 | CG6839-PA | 746..1261 | 744..1259 | 690 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-RB | 1422 | CG3819-RB | 15..1289 | 15..1289 | 6375 | 100 | Plus |
CG3819-RA | 1328 | CG3819-RA | 15..1289 | 15..1289 | 6375 | 100 | Plus |
CG6839-RA | 1325 | CG6839-RA | 746..1261 | 744..1259 | 690 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18920563..18921701 | 1289..151 | 5695 | 100 | Minus |
3L | 28110227 | 3L | 18918680..18919195 | 744..1259 | 690 | 75.6 | Plus |
3L | 28110227 | 3L | 18921957..18922094 | 152..15 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:47:21 has no hits.
BS12840.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:42 Download gff for
BS12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 15..1284 | 17..1286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:35 Download gff for
BS12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 17..1286 | 17..1286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:04 Download gff for
BS12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 17..1286 | 17..1286 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:04 Download gff for
BS12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18920566..18921699 | 153..1286 | 100 | <- | Minus |
3L | 18921957..18922092 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:35 Download gff for
BS12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18913666..18914799 | 153..1286 | 100 | <- | Minus |
arm_3L | 18915057..18915192 | 17..152 | 100 | | Minus |
BS12840.pep Sequence
Translation from 16 to 1287
> BS12840.pep
MKCLVLIAFSGLFLASAQARILPAEDLPWELPEVPVAVNEIEPRAAGCSI
KIRSSELKDPQPLLIKSDTSEIVGFSDTGYVDVDKDKTIEFHCTSSLASP
LSGKSVTAKCVGGTTFKIDDKEHDLSAIKCTSWPVFVGKKSGSSCNGGTT
LIKVGFELSGSRFATQYEVCFNEDEEVTRYVYHRLEPGNNYYATGVDRIT
FGAGGYFAGKNVDKLYTQAVQKETIDKELDMDSSRFFDSAKNIFLARGHM
GAKADFVFAPEQRATFLFINAAPQWQTFNAGNWARVEDGVRAWVAKENKH
VECWTGVWGVTTLPNKNGEQRQLYLSHDNNGNGLIPVPKLYFRVVIEPST
KKGIVLIGVNNPHLSLEEIKRDYILCTDVSDRINWISWKKTDITAGYSYA
CEVPEFRKKVTHLPEFSVSGLLV*
BS12840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-PB | 423 | CG3819-PB | 1..423 | 1..423 | 2242 | 100 | Plus |
CG3819-PA | 423 | CG3819-PA | 1..423 | 1..423 | 2242 | 100 | Plus |
CG6839-PA | 430 | CG6839-PA | 1..429 | 1..423 | 1227 | 54.8 | Plus |
CG14120-PA | 1371 | CG14120-PA | 987..1369 | 48..422 | 950 | 47.1 | Plus |
CG14120-PA | 1371 | CG14120-PA | 5..424 | 2..422 | 888 | 42.1 | Plus |
CG14120-PA | 1371 | CG14120-PA | 593..975 | 38..422 | 737 | 35.8 | Plus |
CG14118-PA | 439 | CG14118-PA | 1..428 | 5..414 | 560 | 29.5 | Plus |