Clone BS12840 Report

Search the DGRC for BS12840

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG3819-RA
Protein status:BS12840.pep: full length peptide match
Sequenced Size:1304

Clone Sequence Records

BS12840.3prime Sequence

827 bp (712 high quality bases) assembled on 2006-10-13

> BS12840.3prime
ATGGTCTAGAAAGCTTTTAGACCAACAGTCCGCTGACGGAGAACTCGGGC
AGATGCGTCACCTTCTTGCGGAACTCCGGAACCTCGCAGGCGTAGGAGTA
ACCGGCGGTGATGTCCGTCTTCTTCCAGCTGATCCAGTTGATCCTGTCGC
TGACGTCCGTGCACAGGATGTAGTCCCGCTTGATCTCCTCCAAACTCAAA
TGGGGATTGTTGACGCCGATCAGAACGATGCCCTTCTTGGTGGATGGTTC
GATTACCACTCGGAAGTATAGCTTGGGAACTGGAATCAGACCGTTGCCGT
TGTTATCGTGGGACAAATAGAGTTGCCTCTGTTCCCCATTCTTGTTGGGC
AGCGTGGTAACACCCCAGACTCCCGTCCAGCACTCCACGTGCTTGTTCTC
CTTGGCCACCCAGGCACGAACTCCGTCCTCCACGCGAGCCCAGTTACCAG
CATTGAAGGTCTGCCACTGAGGAGCAGCGTTGATGAACAGGAAGGTGGCC
CTCTGCTCCGGGGCAAATACGAAGTCAGCCTTGGCACCCATGTGACCACG
GGCCAGGAAGATGTTCTTGGCCGAGTCAAAGAAACGGGATGAATCCATGT
CCAGCTCCTTGTCGATGGTCTCCTTCTGAACAGCCTGCGTGTATAGCTTG
TCCACATTCTTACCCGCGAAATAGCCGCCGGCTCCCAATGTAATGCGATC
CACTCCGGTGGCATAGTAGTTGTTTCCCGGTTCCAGGCGATGATAGACGT
TACCTGGTCACCTCCTCGTCCTCGTTGAAGCATACCTCGTACTGCGTTGC
GAATCGTGAGCCGGAGAGCTCAAAGCC

BS12840.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-PA 1272 CG3819-RA 463..1272 827..17 3990 99.7 Minus
CG6839-PA 1293 CG6839-RA 799..881 508..426 240 91.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-RB 1422 CG3819-RB 479..1289 827..16 4020 99.8 Minus
CG3819-RA 1328 CG3819-RA 479..1289 827..16 4020 99.8 Minus
CG6839-RA 1325 CG6839-RA 746..1261 561..46 715 76.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18920563..18921373 16..827 3995 99.8 Plus
3L 28110227 3L 18918680..18919195 561..46 690 75.6 Minus
Blast to na_te.dros performed on 2015-02-11 17:46:18 has no hits.

BS12840.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:06 Download gff for BS12840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-PA 463..1272 17..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:18:28 Download gff for BS12840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 479..1291 12..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:46 Download gff for BS12840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 479..1291 12..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:46 Download gff for BS12840.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18920560..18921373 14..827 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:18:28 Download gff for BS12840.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18913660..18914473 14..827 99   Plus

BS12840.complete Sequence

1304 bp assembled on 2010-06-25

GenBank Submission: KX802287

> BS12840.complete
GAAGTTATCAGTCGACATGAAGTGCCTAGTGTTGATTGCCTTCAGTGGCC
TCTTCTTGGCCAGTGCCCAGGCCCGAATCCTTCCCGCGGAGGATCTCCCC
TGGGAGTTGCCAGAAGTTCCGGTAGCGGTCAACGAGATTGAACCCAGAGC
AGCTGGTTGTTCAATTAAGATCCGCAGCTCTGAGCTGAAGGATCCCCAGC
CTCTGCTGATTAAATCGGACACCTCTGAAATCGTTGGATTCTCGGACACC
GGCTATGTGGACGTGGACAAGGACAAGACCATCGAATTCCACTGCACCAG
CAGCCTGGCTTCCCCTCTGTCTGGAAAATCCGTGACCGCCAAGTGCGTGG
GTGGCACCACCTTCAAGATTGACGATAAGGAGCACGATCTGTCCGCCATC
AAGTGCACATCGTGGCCAGTTTTTGTGGGCAAGAAGTCCGGATCCAGCTG
CAATGGTGGCACCACGCTGATCAAGGTGGGCTTTGAGCTCTCCGGCTCAC
GATTCGCAACGCAGTACGAGGTATGCTTCAACGAGGACGAGGAGGTGACC
AGGTACGTCTATCATCGCCTGGAACCGGGAAACAACTACTATGCCACCGG
AGTGGATCGCATTACATTTGGAGCCGGCGGCTATTTCGCGGGTAAGAATG
TGGACAAGCTATACACGCAGGCTGTTCAGAAGGAGACCATCGACAAGGAG
CTGGACATGGATTCATCCCGTTTCTTTGACTCGGCCAAGAACATCTTCCT
GGCCCGTGGTCACATGGGTGCCAAGGCTGACTTCGTATTTGCCCCGGAGC
AGAGGGCCACCTTCCTGTTCATCAACGCTGCTCCTCAGTGGCAGACCTTC
AATGCTGGTAACTGGGCTCGCGTGGAGGACGGAGTTCGTGCCTGGGTGGC
CAAGGAGAACAAGCACGTGGAGTGCTGGACGGGAGTCTGGGGTGTTACCA
CGCTGCCCAACAAGAATGGGGAACAGAGGCAACTCTATTTGTCCCACGAT
AACAACGGCAACGGTCTGATTCCAGTTCCCAAGCTATACTTCCGAGTGGT
AATCGAACCATCCACCAAGAAGGGCATCGTTCTGATCGGCGTCAACAATC
CCCATTTGAGTTTGGAGGAGATCAAGCGGGACTACATCCTGTGCACGGAC
GTCAGCGACAGGATCAACTGGATCAGCTGGAAGAAGACGGACATCACCGC
CGGTTACTCCTACGCCTGCGAGGTTCCGGAGTTCCGCAAGAAGGTGACGC
ATCTGCCCGAGTTCTCCGTCAGCGGACTGTTGGTCTAAAAGCTTTCTAGA
CCAT

BS12840.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-RB 1272 CG3819-PB 1..1272 17..1288 6360 100 Plus
CG3819-RA 1272 CG3819-PA 1..1272 17..1288 6360 100 Plus
CG6839-RA 1293 CG6839-PA 746..1261 744..1259 690 75.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-RB 1422 CG3819-RB 15..1289 15..1289 6375 100 Plus
CG3819-RA 1328 CG3819-RA 15..1289 15..1289 6375 100 Plus
CG6839-RA 1325 CG6839-RA 746..1261 744..1259 690 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18920563..18921701 1289..151 5695 100 Minus
3L 28110227 3L 18918680..18919195 744..1259 690 75.6 Plus
3L 28110227 3L 18921957..18922094 152..15 690 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:47:21 has no hits.

BS12840.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:42 Download gff for BS12840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 15..1284 17..1286 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:35 Download gff for BS12840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 17..1286 17..1286 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:04 Download gff for BS12840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 17..1286 17..1286 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:04 Download gff for BS12840.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18920566..18921699 153..1286 100 <- Minus
3L 18921957..18922092 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:35 Download gff for BS12840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18913666..18914799 153..1286 100 <- Minus
arm_3L 18915057..18915192 17..152 100   Minus

BS12840.pep Sequence

Translation from 16 to 1287

> BS12840.pep
MKCLVLIAFSGLFLASAQARILPAEDLPWELPEVPVAVNEIEPRAAGCSI
KIRSSELKDPQPLLIKSDTSEIVGFSDTGYVDVDKDKTIEFHCTSSLASP
LSGKSVTAKCVGGTTFKIDDKEHDLSAIKCTSWPVFVGKKSGSSCNGGTT
LIKVGFELSGSRFATQYEVCFNEDEEVTRYVYHRLEPGNNYYATGVDRIT
FGAGGYFAGKNVDKLYTQAVQKETIDKELDMDSSRFFDSAKNIFLARGHM
GAKADFVFAPEQRATFLFINAAPQWQTFNAGNWARVEDGVRAWVAKENKH
VECWTGVWGVTTLPNKNGEQRQLYLSHDNNGNGLIPVPKLYFRVVIEPST
KKGIVLIGVNNPHLSLEEIKRDYILCTDVSDRINWISWKKTDITAGYSYA
CEVPEFRKKVTHLPEFSVSGLLV*

BS12840.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-PB 423 CG3819-PB 1..423 1..423 2242 100 Plus
CG3819-PA 423 CG3819-PA 1..423 1..423 2242 100 Plus
CG6839-PA 430 CG6839-PA 1..429 1..423 1227 54.8 Plus
CG14120-PA 1371 CG14120-PA 987..1369 48..422 950 47.1 Plus
CG14120-PA 1371 CG14120-PA 5..424 2..422 888 42.1 Plus
CG14120-PA 1371 CG14120-PA 593..975 38..422 737 35.8 Plus
CG14118-PA 439 CG14118-PA 1..428 5..414 560 29.5 Plus