Clone BS12844 Report

Search the DGRC for BS12844

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG32264-RA
Protein status:BS12844.pep: Imported from assembly
Sequenced Size:2847

Clone Sequence Records

BS12844.3prime Sequence

858 bp (747 high quality bases) assembled on 2006-10-13

> BS12844.3prime
ATGGTCTAGAAAGCTTTCATGGGCCTATGGAATCTCGTCAAATGCCGACT
GCCCTCGTGGACGGCCATTTCGGAGGACTTGAACTCGTTCAGCTCCTTGC
GAATGGCGGCCTTGTCCTTTGGCGTCAGTCTTGTCCACGGCTTGTCCGCC
CGCCGATCGTAGTCGTGGGCCTGCGTGACCTCGATGTAGTCGTTGAATCG
GATGATCTTCTTCTCCTTCAGCTCCTCGACGGTCGGCCGAAAGCTGAGTT
TGCGCAACAGATACGACTTCTTCTCCTCCTTCTGCTTCTTCTCCTCGGCG
GGTGATTGAGTTTTCAAGATGTTGCGCTCGACCAGCTCCTCGGCCGTGGG
TCGCATGGACAGCCGCCGGATGAGGCGTGCTCCGATCGCCTCCTTGGACT
CCTTGAGCTCGTTGTCGTTGACCTGGTGCAGGATGTTGCGGTTGATCAGG
TCCTGCTTGTCCGGTCGGAGCTGCAGCTTCAGGGACAGCGACTCCTTGCG
GGCCAGTTTGGCCAGCCGGGTGTTGTCGTTGTCCTCGTCCCTGTAGACGA
TATGGCCATCGCTGTCGTCACTATCGCTGCTGCTTTCGCGTATCACAAAT
GGCCGGGCGTTCTCCTTGTTCTCCACGGTGCACGGCAATTGGATGTTGAA
CATTTGCTGCCTGCATAGTCTAATCCGTGGTCGTAGTATTGGCTTGAGCG
AATAGTTATTGCCCGCCGCATCCTGNCGAACGACCAGCGGTCGTTGGTTG
GCGGATTGTTGGGCCGCAGCTGCGGCAGCTGCCGCCATCGAGCCAATACC
GCCATTGCTGTTTGCCATGGCCGCTGCCGTTGCCGCACTTCCCGCTCCAT
GTTCCTGG

BS12844.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32264-PD 3027 CG32264-RD 2187..3023 858..22 4166 99.8 Minus
CG32264-PC 2310 CG32264-RC 1470..2306 858..22 4166 99.8 Minus
CG32264-PA 2814 CG32264-RA 1974..2810 858..22 4166 99.8 Minus
CG32264-PB 2373 CG32264-RB 1728..2369 663..22 3210 100 Minus
CG32264-PB 2373 CG32264-RB 1563..1727 858..694 806 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32264-RI 3797 CG32264-RI 2782..3618 858..22 4174 99.9 Minus
CG32264-RD 3788 CG32264-RD 2773..3609 858..22 4174 99.9 Minus
CG32264-RM 3767 CG32264-RM 2947..3588 663..22 3210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3718638..3718991 311..664 1770 100 Plus
3L 28110227 3L 3718196..3718472 34..310 1385 100 Plus
3L 28110227 3L 3722155..3722320 693..858 819 99.4 Plus
Blast to na_te.dros performed 2015-02-05 02:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 877..942 548..613 123 65.2 Plus

BS12844.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:08 Download gff for BS12844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32264-PA 1974..2814 17..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:07:45 Download gff for BS12844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32264-RD 2773..3618 11..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:20 Download gff for BS12844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32264-RD 2773..3618 11..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:20 Download gff for BS12844.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3718638..3718990 311..663 100 <- Plus
3L 3718196..3718472 34..310 100 <- Plus
3L 3721537..3721566 664..693 100 <- Plus
3L 3722156..3722320 694..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:07:45 Download gff for BS12844.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3721537..3721566 664..693 100 <- Plus
arm_3L 3722156..3722320 694..858 99   Plus
arm_3L 3718196..3718472 34..310 100 <- Plus
arm_3L 3718638..3718990 311..663 100 <- Plus

BS12844.5prime Sequence

737 bp (702 high quality bases) assembled on 2006-10-13

> BS12844.5prime
GAAGTTATCAGTCGACATGGCAGCGGTGCAGCAGCAGCAGCACCACCAGC
GGCAGTTGCTGCACCACCAGCACTCCCATCCGCCCTTCCAAGCCACCCAG
CAGCACCAGCCCGCGCAGCAGCAGCAGCAGCAGCAGCATCAAACGGTGCA
GCAGCAGCAGCAACAGCAGCAGCAGCGCTTGCACCACTCGCACCACCCAC
CGCTGCAGCACCACCTGTCGCTGGGTGGCTACCAGCAACTGCAGCTGCAG
ATGCAGGCCAACAGGAATCAGTACTCCACGCCGCAGCATCACTATCGCAA
TGCAACCAATGCTGCAGCGGCCGCAGCTGCAACATCGGCGAATGCTGCCA
CCATTAGACGCCGCACCTTGAGTCACGTATCGCGCTCTTACTCCCTGGGC
ACAGCGGCGGCCAACGCAGCAGCAGCCGCAGCAGCAGCAGCAGCAACAGC
AGCGGCCACAACTGCAGCAGCCACAACTGCAACATCATCGGCCAGTAGCA
ACAATCAACTGAGTATCCACAAAACTGGGATCATGGTCGCCGCCTCACGA
TGTCGAAGTCCCATAATGCTGTGCCACAGTCACAGCGACGGCGAGTTTCC
ACTGTACCGAGCTAAGAAACAGAATGGAGCTGCCATACGCACAAATAGCC
TGGGTTCGGGCACTAGGACGCCACCTTTGGAAAGGAAGAGCAAACTCAGT
GCCCTGGGCAGATTCTTTAAGCCCTGGAAATGGCGAC

BS12844.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32264-PA 2814 CG32264-RA 1..721 17..737 3605 100 Plus
CG32264-PC 2310 CG32264-RC 89..217 609..737 645 100 Plus
CG32264-PD 3027 CG32264-RD 808..934 611..737 635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32264-RM 3767 CG32264-RM 809..1529 17..737 3605 100 Plus
CG32264-RI 3797 CG32264-RI 809..1529 17..737 3605 100 Plus
CG32264-RL 2798 CG32264-RL 432..560 609..737 645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3799886..3800480 611..17 2975 100 Minus
3L 28110227 3L 3769281..3769408 737..610 640 100 Minus
Blast to na_te.dros performed 2015-02-13 12:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3239..3322 401..487 184 71.3 Plus

BS12844.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:08 Download gff for BS12844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32264-PA 1..721 17..737 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:34 Download gff for BS12844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32264-RI 804..1529 12..737 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:30 Download gff for BS12844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32264-RI 804..1529 12..737 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:30 Download gff for BS12844.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3769281..3769406 612..737 100 <- Minus
3L 3799886..3800485 12..611 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:34 Download gff for BS12844.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3769281..3769406 612..737 100 <- Minus
arm_3L 3799886..3800485 12..611 99   Minus

BS12844.complete Sequence

2847 bp assembled on 2012-04-25

GenBank Submission: KX806449

> BS12844.complete
GAAGTTATCAGTCGACATGGCAGCGGTGCAGCAGCAGCAGCACCACCAGC
GGCAGTTGCTGCACCACCAGCACTCCCATCCGCCCTTCCAAGCCACCCAG
CAGCACCAGCCCGCGCAGCAGCAGCAGCAGCAGCAGCATCAAACGGTGCA
GCAGCAGCAGCAACAGCAGCAGCAGCGCTTGCACCACTCGCACCACCCAC
CGCTGCAGCACCACCTGTCGCTGGGTGGCTACCAGCAACTGCAGCTGCAG
ATGCAGGCCAACAGGAATCAGTACTCCACGCCGCAGCATCACTATCGCAA
TGCAACCAATGCTGCAGCGGCCGCAGCTGCAACATCGGCGAATGCTGCCA
CCATTAGACGCCGCACCTTGAGTCACGTATCGCGCTCTTACTCCCTGGGC
ACAGCGGCGGCCAACGCAGCAGCAGCCGCAGCAGCAGCAGCAGCAACAGC
AGCGGCCACAACTGCAGCAGCCACAACTGCAACATCATCGGCCAGTAGCA
ACAATCAACTGAGTATCCACAAAACTGGGATCATGGTCGCCGCCTCACGA
TGTCGAAGTCCCATAATGCTGTGCCACAGTCACAGCGACGGCGAGTTTCC
ACTGTACCGAGCTAAGAAACAGAATGGAGCTGCCATACGCACAAATAGCC
TGGGTTCGGGCACTAGGACGCCACCTTTGGAAAGGAAGAGCAAACTCAGT
GCCCTGGGCAGATTCTTTAAGCCCTGGAAATGGCGACGGAAAAAGAAGAG
CGAGAAGTTCGAGGCGGCCTCCAAATCCCTGGAGCGTAAGATTTCTGTGC
GTGCCAATCGTGATGAGCTAGTGCAAAAGGGGATTCTAATGCCTGAGAGT
CCCCTGGGCAATATTCCAGAACCAGGCGAGGAGTCGTATTATAACAACAG
CAATAGTGGAGCCACCGCGAATGGATCCCTGCTCAACTCAGCCGTCCACA
ATAATTCCATGAGCCAGGCCAATAATTCCATAAATGCCACCACCGGCAAT
CCGCTCATCTCCGCCGCCCAGCAGCAGCTGAACCAGGGACTTCCCAACTC
GATCTCCGTGCAGCAGTTCAACGGTCAGAACCAGAATCCACAGAATTCCA
TGGCCAATGGCCTAGTGGGTGGCGGCGGCGGCGGTGGAGACGGTTCCTCG
GACACGTCTTCCCTCAGCGGCGGCGTTCCGCACTCGCAGTCGGCGCCCCA
GCAACTGGGGGTGGGGCAACCACCACCACCCCTAACACCACTGGCCCAGC
ACCACCAGGCGCTGGCACAGCAGCTGCAGCAGCGATTCGCCATCAGCAAC
AATAACGAACCAAGAAAAGACAAGACTGATGCACAACAACAACAACACGG
AGGCAATGGCACAATATCCACGCCCAACATCGAGCAGCCCACCTGCCAGG
GCTCGATGCTGCCGCCCCCCGGAGGCGGTGGCCATCACCAGGTGGACGGG
AGTGGCAAGATGGAGCGGCCCAACACGCTCGCCGGCGCCAATAAGCTGAC
CCGTCGCGGGGTCAACATCTGCTATCACAACGAGCACATGTATGGCGAAG
ATGGAAAAATGGTGGGTGGTCCGCCGGGCAGCACTCCGCCCCCGTATCCG
GGTGGCAAACTACCGCCGGGCGTAATGCTCAGCGAGCTGCCGGAGCCGCC
GATTCCGCTGTCGGAGATCGGACCGATCCCACCGCCCCCGATGTTCTCCA
CTCCGAGTCCCACGCTCATCGCAGGACGACCGCACGGGCCAGGGGCCGTC
AACGATCAGGATTATCAGCAGGACTACGACTACGATGATAACGATCCCGA
TCAGGATGAGCTTGACTCGGACGATGAGTACGCCCCGTATGGTGGCAACC
ATGTGCGCATGATGGACACGCAACGCGTCGAGGAAATTCCAGCCAAAGAG
CCCAAACCAAATGCAGTTCCTCTCAAGTCGGCGCTGAAGAAGAAGGGCGG
TATGCAGCCCGCTTCCGCCTCCACGCCGGTCACGCCCACCCAGGAACATG
GAGCGGGAAGTGCGGCAACGGCAGCGGCCATGGCAAACAGCAATGGCGGT
ATTGGCTCGATGGCGGCAGCTGCCGCAGCTGCGGCCCAACAATCCGCCAA
CCAACGACCGCTGGTCGTTCGCCAGGATGCGGCGGGCAATAACTATTCGC
TCAAGCCAATACTACGACCACGGATTAGACTATGCAGGCAGCAAATGTTC
AACATCCAATTGCCGTGCACCGTGGAGAACAAGGAGAACGCCCGGCCATT
TGTGATACGCGAAAGCAGCAGCGATAGTGACGACAGCGATGGCCATATCG
TCTACAGGGACGAGGACAACGACAACACCCGGCTGGCCAAACTGGCCCGC
AAGGAGTCGCTGTCCCTGAAGCTGCAGCTCCGACCGGACAAGCAGGACCT
GATCAACCGCAACATCCTGCACCAGGTCAACGACAACGAGCTCAAGGAGT
CCAAGGAGGCGATCGGAGCACGCCTCATCCGGCGGCTGTCCATGCGACCC
ACGGCCGAGGAGCTGGTCGAGCGCAACATCTTGAAAACTCAATCACCCGC
CGAGGAGAAGAAGCAGAAGGAGGAGAAGAAGTCGTATCTGTTGCGCAAAC
TCAGCTTTCGGCCGACCGTCGAGGAGCTGAAGGAGAAGAAGATCATCCGA
TTCAACGACTACATCGAGGTCACGCAGGCCCACGACTACGATCGGCGGGC
GGACAAGCCGTGGACAAGACTGACGCCAAAGGACAAGGCCGCCATTCGCA
AGGAGCTGAACGAGTTCAAGTCCTCCGAAATGGCCGTCCACGAGGGCAGT
CGGCATTTGACGAGATTCCATAGGCCCATGAAAGCTTTCTAGACCAT

BS12844.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32264-RI 2814 CG32264-PI 1..2810 17..2826 14035 100 Plus
CG32264-RD 3027 CG32264-PD 808..3023 611..2826 11065 100 Plus
CG32264-RM 2784 CG32264-PM 1..2138 17..2154 10675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32264-RI 3797 CG32264-RI 809..3618 17..2826 14035 100 Plus
CG32264-RD 3788 CG32264-RD 1394..3609 611..2826 11065 100 Plus
CG32264-RM 3767 CG32264-RM 809..2946 17..2154 10675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3799886..3800480 611..17 2975 100 Minus
3L 28110227 3L 3767137..3767571 1307..873 2175 100 Minus
3L 28110227 3L 3722155..3722523 2155..1787 1845 100 Minus
3L 28110227 3L 3718638..3718991 2537..2184 1770 100 Minus
3L 28110227 3L 3718196..3718472 2814..2538 1385 100 Minus
3L 28110227 3L 3722856..3723105 1791..1542 1220 99.2 Minus
3L 28110227 3L 3723639..3723873 1541..1307 1175 100 Minus
3L 28110227 3L 3769242..3769408 776..610 835 100 Minus
3L 28110227 3L 3769077..3769176 876..777 500 100 Minus
Blast to na_te.dros performed 2014-11-28 12:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3239..3322 401..487 184 71.3 Plus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 877..942 2300..2235 123 65.2 Minus

BS12844.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:53 Download gff for BS12844.complete
Subject Subject Range Query Range Percent Splice Strand
CG32264-RA 804..3627 12..2837 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:28 Download gff for BS12844.complete
Subject Subject Range Query Range Percent Splice Strand
CG32264-RA 809..3621 17..2830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:11 Download gff for BS12844.complete
Subject Subject Range Query Range Percent Splice Strand
CG32264-RI 809..3621 17..2830 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:01 Download gff for BS12844.complete
Subject Subject Range Query Range Percent Splice Strand
CG32264-RA 809..3621 17..2830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:46 Download gff for BS12844.complete
Subject Subject Range Query Range Percent Splice Strand
CG32264-RI 809..3621 17..2830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:46 Download gff for BS12844.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3723639..3723872 1308..1541 100 <- Minus
3L 3718196..3718472 2538..2814 100 <- Minus
3L 3718638..3718990 2185..2537 100 <- Minus
3L 3721537..3721566 2155..2184 100 <- Minus
3L 3722156..3722522 1788..2154 100 <- Minus
3L 3722860..3723105 1542..1787 99 <- Minus
3L 3767137..3767568 876..1307 100 <- Minus
3L 3769078..3769176 777..875 100 <- Minus
3L 3769242..3769406 612..776 100 <- Minus
3L 3799886..3800480 17..611 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:11 Download gff for BS12844.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3723639..3723872 1308..1541 100 <- Minus
arm_3L 3721537..3721566 2155..2184 100 <- Minus
arm_3L 3722860..3723105 1542..1787 99 <- Minus
arm_3L 3722156..3722522 1788..2154 100 <- Minus
arm_3L 3718196..3718472 2538..2814 100 <- Minus
arm_3L 3718638..3718990 2185..2537 100 <- Minus
arm_3L 3767137..3767568 876..1307 100 <- Minus
arm_3L 3769078..3769176 777..875 100 <- Minus
arm_3L 3769242..3769406 612..776 100 <- Minus
arm_3L 3799886..3800480 17..611 100   Minus

BS12844.pep Sequence

Translation from 16 to 2841

> BS12844.pep
MAAVQQQQHHQRQLLHHQHSHPPFQATQQHQPAQQQQQQQHQTVQQQQQQ
QQQRLHHSHHPPLQHHLSLGGYQQLQLQMQANRNQYSTPQHHYRNATNAA
AAAAATSANAATIRRRTLSHVSRSYSLGTAAANAAAAAAAAAATAAATTA
AATTATSSASSNNQLSIHKTGIMVAASRCRSPIMLCHSHSDGEFPLYRAK
KQNGAAIRTNSLGSGTRTPPLERKSKLSALGRFFKPWKWRRKKKSEKFEA
ASKSLERKISVRANRDELVQKGILMPESPLGNIPEPGEESYYNNSNSGAT
ANGSLLNSAVHNNSMSQANNSINATTGNPLISAAQQQLNQGLPNSISVQQ
FNGQNQNPQNSMANGLVGGGGGGGDGSSDTSSLSGGVPHSQSAPQQLGVG
QPPPPLTPLAQHHQALAQQLQQRFAISNNNEPRKDKTDAQQQQHGGNGTI
STPNIEQPTCQGSMLPPPGGGGHHQVDGSGKMERPNTLAGANKLTRRGVN
ICYHNEHMYGEDGKMVGGPPGSTPPPYPGGKLPPGVMLSELPEPPIPLSE
IGPIPPPPMFSTPSPTLIAGRPHGPGAVNDQDYQQDYDYDDNDPDQDELD
SDDEYAPYGGNHVRMMDTQRVEEIPAKEPKPNAVPLKSALKKKGGMQPAS
ASTPVTPTQEHGAGSAATAAAMANSNGGIGSMAAAAAAAAQQSANQRPLV
VRQDAAGNNYSLKPILRPRIRLCRQQMFNIQLPCTVENKENARPFVIRES
SSDSDDSDGHIVYRDEDNDNTRLAKLARKESLSLKLQLRPDKQDLINRNI
LHQVNDNELKESKEAIGARLIRRLSMRPTAEELVERNILKTQSPAEEKKQ
KEEKKSYLLRKLSFRPTVEELKEKKIIRFNDYIEVTQAHDYDRRADKPWT
RLTPKDKAAIRKELNEFKSSEMAVHEGSRHLTRFHRPMKAF*

BS12844.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32264-PI 937 CG32264-PI 1..937 1..937 4894 100 Plus
CG32264-PM 927 CG32264-PM 1..927 1..937 4814 98.8 Plus
CG32264-PD 1008 CG32264-PD 133..1008 47..937 3892 84.4 Plus
CG32264-PE 998 CG32264-PE 133..998 47..937 3812 83.2 Plus
CG32264-PL 759 CG32264-PL 30..759 198..937 3797 98.5 Plus