Clone Sequence Records
BS12848.3prime Sequence
726 bp (679 high quality bases) assembled on 2006-10-13
> BS12848.3prime
ATGGTCTAGAAAGCTTCTAGAGCTCATCTCGCGCCTGGGAGGACGATGGC
AGCGTCACCTCCTCCACGGAGCCCAGGTGTATGGTTCTATTTGGCCGACT
GAACTTTGGTATGTATGCGACCGAGTCGCTGTTGCTGACCACCGAGTTAT
GTAGGTGTTCCGTGGGTGCCGCGGGATCAGGACTTGTGAGTGTGATTTTC
GAACCAGTGGCCACTCTGTCCCTGGCCTGCATGCTGGCCTCCACGTCCAG
GTTGCGAGGCTGCCGGAAGTCGCATTCCAGCGAGAAGGCCGAATCTCCGG
GTGTGATCAGCTCTGGGTCGTTTTGGATCACCACGATGTTGGTGTAGAGA
TCACCATCCCGGATCGTCTGGCACTGGTCCAGCTGGAAGTTCATCTCCAT
TGTGCGGGATCCCTGGCTGGAAGATGGCTTCATGAAGCACGGCGCAGACT
GCTTGTAGAAGCTGCCACGAGTGTACATCACACCCATGAAAGGCTTCTCC
GTCTCCAGCACCACGTTCATGGAGTCCGCTCCGCACTTGAGGTTAACCTT
TTGAATGCCCTGGTCGCTGCCCTCGATTTTAAAGGTGTCCGAAAGGTCTT
GTTCCCAGATTTCTTGGTTTTGATTTTTCTGCTGCTTATTGGCAGATACG
TGCACAGCCAACAGCAAATTGCAGGCGAACAAAAGCAGAAAGCCATTCAT
TAATCCCGACATGTCGACTGATAACT
BS12848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-PA | 696 | CG10005-RA | 1..696 | 712..17 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-RA | 1055 | CG10005-RA | 110..805 | 712..17 | 3480 | 100 | Minus |
CG10005-RB | 880 | CG10005-RB | 110..607 | 712..215 | 2490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11976099..11976497 | 216..614 | 1995 | 100 | Plus |
3R | 32079331 | 3R | 11975516..11975718 | 17..219 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 11976989..11977088 | 613..712 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:42:47 has no hits.
BS12848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:11 Download gff for
BS12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-PA | 1..696 | 17..712 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:37 Download gff for
BS12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 103..805 | 17..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:58 Download gff for
BS12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 103..805 | 17..720 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:58 Download gff for
BS12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11975516..11975714 | 17..215 | 100 | <- | Plus |
3R | 11976099..11976495 | 216..612 | 100 | <- | Plus |
3R | 11976989..11977095 | 613..720 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:37 Download gff for
BS12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7801238..7801436 | 17..215 | 100 | <- | Plus |
arm_3R | 7801821..7802217 | 216..612 | 100 | <- | Plus |
arm_3R | 7802711..7802817 | 613..720 | 97 | | Plus |
BS12848.5prime Sequence
726 bp (726 high quality bases) assembled on 2006-10-13
> BS12848.5prime
GAAGTTATCAGTCGACATGTCGGGATTAATGAATGGCTTTCTGCTTTTGT
TCGCCTGCAATTTGCTGTTGGCTGTGCACGTATCTGCCAATAAGCAGCAG
AAAAATCAAAACCAAGAAATCTGGGAACAAGACCTTTCGGACACCTTTAA
AATCGAGGGCAGCGACCAGGGCATTCAAAAGGTTAACCTCAAGTGCGGAG
CGGACTCCATGAACGTGGTGCTGGAGACGGAGAAGCCTTTCATGGGTGTG
ATGTACACTCGTGGCAGCTTCTACAAGCAGTCTGCGCCGTGCTTCATGAA
GCCATCTTCCAGCCAGGGATCCCGCACAATGGAGATGAACTTCCAGCTGG
ACCAGTGCCAGACGATCCGGGATGGTGATCTCTACACCAACATCGTGGTG
ATCCAAAACGACCCAGAGCTGATCACACCCGGAGATTCGGCCTTCTCGCT
GGAATGCGACTTCCGGCAGCCTCGCAACCTGGACGTGGAGGCCAGCATGC
AGGCCAGGGACAGAGTGGCCACTGGTTCGAAAATCACACTCACAAGTCCT
GATCCCGCGGCACCCACGGAACACCTACATAACTCGGTGGTCAGCAACAG
CGACTCGGTCGCATACATACCAAAGTTCAGTCGGCCAAATAGAACCATAC
ACCTGGGCTCCGTGGAGGAGGTGACGCTGCCATCGTCCTCCCAGGCGCGA
GATGAGCTCTAGAAGCTTTCTAGACC
BS12848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-PA | 696 | CG10005-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-RA | 1055 | CG10005-RA | 110..805 | 17..712 | 3480 | 100 | Plus |
CG10005-RB | 880 | CG10005-RB | 110..607 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11976099..11976497 | 513..115 | 1995 | 100 | Minus |
3R | 32079331 | 3R | 11975516..11975718 | 712..510 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 11976989..11977088 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:17:52 has no hits.
BS12848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:11 Download gff for
BS12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:07 Download gff for
BS12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 103..805 | 9..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:24 Download gff for
BS12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 103..805 | 9..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:24 Download gff for
BS12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11976989..11977095 | 9..116 | 97 | | Minus |
3R | 11975516..11975714 | 514..712 | 100 | <- | Minus |
3R | 11976099..11976495 | 117..513 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:07 Download gff for
BS12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7801238..7801436 | 514..712 | 100 | <- | Minus |
arm_3R | 7801821..7802217 | 117..513 | 100 | <- | Minus |
arm_3R | 7802711..7802817 | 9..116 | 97 | | Minus |
BS12848.complete Sequence
728 bp assembled on 2006-11-01
GenBank Submission: FJ637313
> BS12848.complete
GAAGTTATCAGTCGACATGTCGGGATTAATGAATGGCTTTCTGCTTTTGT
TCGCCTGCAATTTGCTGTTGGCTGTGCACGTATCTGCCAATAAGCAGCAG
AAAAATCAAAACCAAGAAATCTGGGAACAAGACCTTTCGGACACCTTTAA
AATCGAGGGCAGCGACCAGGGCATTCAAAAGGTTAACCTCAAGTGCGGAG
CGGACTCCATGAACGTGGTGCTGGAGACGGAGAAGCCTTTCATGGGTGTG
ATGTACACTCGTGGCAGCTTCTACAAGCAGTCTGCGCCGTGCTTCATGAA
GCCATCTTCCAGCCAGGGATCCCGCACAATGGAGATGAACTTCCAGCTGG
ACCAGTGCCAGACGATCCGGGATGGTGATCTCTACACCAACATCGTGGTG
ATCCAAAACGACCCAGAGCTGATCACACCCGGAGATTCGGCCTTCTCGCT
GGAATGCGACTTCCGGCAGCCTCGCAACCTGGACGTGGAGGCCAGCATGC
AGGCCAGGGACAGAGTGGCCACTGGTTCGAAAATCACACTCACAAGTCCT
GATCCCGCGGCACCCACGGAACACCTACATAACTCGGTGGTCAGCAACAG
CGACTCGGTCGCATACATACCAAAGTTCAGTCGGCCAAATAGAACCATAC
ACCTGGGCTCCGTGGAGGAGGTGACGCTGCCATCGTCCTCCCAGGCGCGA
GATGAGCTCTAGAAGCTTTCTAGACCAT
BS12848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-RA | 696 | CG10005-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
CG10005-RB | 549 | CG10005-PB | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-RA | 1055 | CG10005-RA | 110..805 | 17..712 | 3480 | 100 | Plus |
CG10005-RB | 880 | CG10005-RB | 110..607 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11976099..11976497 | 513..115 | 1995 | 100 | Minus |
3R | 32079331 | 3R | 11975516..11975718 | 712..510 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 11976989..11977088 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:46:34 has no hits.
BS12848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:46 Download gff for
BS12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:55 Download gff for
BS12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 96..798 | 9..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:27 Download gff for
BS12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 110..805 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:46 Download gff for
BS12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 96..798 | 9..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:10 Download gff for
BS12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 110..805 | 17..712 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:10 Download gff for
BS12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11975516..11975714 | 514..712 | 100 | <- | Minus |
3R | 11976099..11976495 | 117..513 | 100 | <- | Minus |
3R | 11976989..11977088 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:27 Download gff for
BS12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7801238..7801436 | 514..712 | 100 | <- | Minus |
arm_3R | 7801821..7802217 | 117..513 | 100 | <- | Minus |
arm_3R | 7802711..7802810 | 17..116 | 100 | | Minus |
BS12848.pep Sequence
Translation from 16 to 711
> BS12848.pep
MSGLMNGFLLLFACNLLLAVHVSANKQQKNQNQEIWEQDLSDTFKIEGSD
QGIQKVNLKCGADSMNVVLETEKPFMGVMYTRGSFYKQSAPCFMKPSSSQ
GSRTMEMNFQLDQCQTIRDGDLYTNIVVIQNDPELITPGDSAFSLECDFR
QPRNLDVEASMQARDRVATGSKITLTSPDPAAPTEHLHNSVVSNSDSVAY
IPKFSRPNRTIHLGSVEEVTLPSSSQARDEL*
BS12848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-PA | 231 | CG10005-PA | 1..231 | 1..231 | 1193 | 100 | Plus |
CG10005-PB | 182 | CG10005-PB | 1..166 | 1..166 | 866 | 100 | Plus |