Clone BS12848 Report

Search the DGRC for BS12848

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG10005-RA
Protein status:BS12848.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12848.3prime Sequence

726 bp (679 high quality bases) assembled on 2006-10-13

> BS12848.3prime
ATGGTCTAGAAAGCTTCTAGAGCTCATCTCGCGCCTGGGAGGACGATGGC
AGCGTCACCTCCTCCACGGAGCCCAGGTGTATGGTTCTATTTGGCCGACT
GAACTTTGGTATGTATGCGACCGAGTCGCTGTTGCTGACCACCGAGTTAT
GTAGGTGTTCCGTGGGTGCCGCGGGATCAGGACTTGTGAGTGTGATTTTC
GAACCAGTGGCCACTCTGTCCCTGGCCTGCATGCTGGCCTCCACGTCCAG
GTTGCGAGGCTGCCGGAAGTCGCATTCCAGCGAGAAGGCCGAATCTCCGG
GTGTGATCAGCTCTGGGTCGTTTTGGATCACCACGATGTTGGTGTAGAGA
TCACCATCCCGGATCGTCTGGCACTGGTCCAGCTGGAAGTTCATCTCCAT
TGTGCGGGATCCCTGGCTGGAAGATGGCTTCATGAAGCACGGCGCAGACT
GCTTGTAGAAGCTGCCACGAGTGTACATCACACCCATGAAAGGCTTCTCC
GTCTCCAGCACCACGTTCATGGAGTCCGCTCCGCACTTGAGGTTAACCTT
TTGAATGCCCTGGTCGCTGCCCTCGATTTTAAAGGTGTCCGAAAGGTCTT
GTTCCCAGATTTCTTGGTTTTGATTTTTCTGCTGCTTATTGGCAGATACG
TGCACAGCCAACAGCAAATTGCAGGCGAACAAAAGCAGAAAGCCATTCAT
TAATCCCGACATGTCGACTGATAACT

BS12848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-PA 696 CG10005-RA 1..696 712..17 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-RA 1055 CG10005-RA 110..805 712..17 3480 100 Minus
CG10005-RB 880 CG10005-RB 110..607 712..215 2490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11976099..11976497 216..614 1995 100 Plus
3R 32079331 3R 11975516..11975718 17..219 1015 100 Plus
3R 32079331 3R 11976989..11977088 613..712 500 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:42:47 has no hits.

BS12848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:11 Download gff for BS12848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-PA 1..696 17..712 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:37 Download gff for BS12848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 103..805 17..720 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:58 Download gff for BS12848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 103..805 17..720 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:58 Download gff for BS12848.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11975516..11975714 17..215 100 <- Plus
3R 11976099..11976495 216..612 100 <- Plus
3R 11976989..11977095 613..720 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:37 Download gff for BS12848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7801238..7801436 17..215 100 <- Plus
arm_3R 7801821..7802217 216..612 100 <- Plus
arm_3R 7802711..7802817 613..720 97   Plus

BS12848.5prime Sequence

726 bp (726 high quality bases) assembled on 2006-10-13

> BS12848.5prime
GAAGTTATCAGTCGACATGTCGGGATTAATGAATGGCTTTCTGCTTTTGT
TCGCCTGCAATTTGCTGTTGGCTGTGCACGTATCTGCCAATAAGCAGCAG
AAAAATCAAAACCAAGAAATCTGGGAACAAGACCTTTCGGACACCTTTAA
AATCGAGGGCAGCGACCAGGGCATTCAAAAGGTTAACCTCAAGTGCGGAG
CGGACTCCATGAACGTGGTGCTGGAGACGGAGAAGCCTTTCATGGGTGTG
ATGTACACTCGTGGCAGCTTCTACAAGCAGTCTGCGCCGTGCTTCATGAA
GCCATCTTCCAGCCAGGGATCCCGCACAATGGAGATGAACTTCCAGCTGG
ACCAGTGCCAGACGATCCGGGATGGTGATCTCTACACCAACATCGTGGTG
ATCCAAAACGACCCAGAGCTGATCACACCCGGAGATTCGGCCTTCTCGCT
GGAATGCGACTTCCGGCAGCCTCGCAACCTGGACGTGGAGGCCAGCATGC
AGGCCAGGGACAGAGTGGCCACTGGTTCGAAAATCACACTCACAAGTCCT
GATCCCGCGGCACCCACGGAACACCTACATAACTCGGTGGTCAGCAACAG
CGACTCGGTCGCATACATACCAAAGTTCAGTCGGCCAAATAGAACCATAC
ACCTGGGCTCCGTGGAGGAGGTGACGCTGCCATCGTCCTCCCAGGCGCGA
GATGAGCTCTAGAAGCTTTCTAGACC

BS12848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-PA 696 CG10005-RA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-RA 1055 CG10005-RA 110..805 17..712 3480 100 Plus
CG10005-RB 880 CG10005-RB 110..607 17..514 2490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11976099..11976497 513..115 1995 100 Minus
3R 32079331 3R 11975516..11975718 712..510 1015 100 Minus
3R 32079331 3R 11976989..11977088 116..17 500 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:17:52 has no hits.

BS12848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:11 Download gff for BS12848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-PA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:07 Download gff for BS12848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 103..805 9..712 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:24 Download gff for BS12848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 103..805 9..712 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:24 Download gff for BS12848.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11976989..11977095 9..116 97   Minus
3R 11975516..11975714 514..712 100 <- Minus
3R 11976099..11976495 117..513 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:07 Download gff for BS12848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7801238..7801436 514..712 100 <- Minus
arm_3R 7801821..7802217 117..513 100 <- Minus
arm_3R 7802711..7802817 9..116 97   Minus

BS12848.complete Sequence

728 bp assembled on 2006-11-01

GenBank Submission: FJ637313

> BS12848.complete
GAAGTTATCAGTCGACATGTCGGGATTAATGAATGGCTTTCTGCTTTTGT
TCGCCTGCAATTTGCTGTTGGCTGTGCACGTATCTGCCAATAAGCAGCAG
AAAAATCAAAACCAAGAAATCTGGGAACAAGACCTTTCGGACACCTTTAA
AATCGAGGGCAGCGACCAGGGCATTCAAAAGGTTAACCTCAAGTGCGGAG
CGGACTCCATGAACGTGGTGCTGGAGACGGAGAAGCCTTTCATGGGTGTG
ATGTACACTCGTGGCAGCTTCTACAAGCAGTCTGCGCCGTGCTTCATGAA
GCCATCTTCCAGCCAGGGATCCCGCACAATGGAGATGAACTTCCAGCTGG
ACCAGTGCCAGACGATCCGGGATGGTGATCTCTACACCAACATCGTGGTG
ATCCAAAACGACCCAGAGCTGATCACACCCGGAGATTCGGCCTTCTCGCT
GGAATGCGACTTCCGGCAGCCTCGCAACCTGGACGTGGAGGCCAGCATGC
AGGCCAGGGACAGAGTGGCCACTGGTTCGAAAATCACACTCACAAGTCCT
GATCCCGCGGCACCCACGGAACACCTACATAACTCGGTGGTCAGCAACAG
CGACTCGGTCGCATACATACCAAAGTTCAGTCGGCCAAATAGAACCATAC
ACCTGGGCTCCGTGGAGGAGGTGACGCTGCCATCGTCCTCCCAGGCGCGA
GATGAGCTCTAGAAGCTTTCTAGACCAT

BS12848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-RA 696 CG10005-PA 1..696 17..712 3480 100 Plus
CG10005-RB 549 CG10005-PB 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-RA 1055 CG10005-RA 110..805 17..712 3480 100 Plus
CG10005-RB 880 CG10005-RB 110..607 17..514 2490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11976099..11976497 513..115 1995 100 Minus
3R 32079331 3R 11975516..11975718 712..510 1015 100 Minus
3R 32079331 3R 11976989..11977088 116..17 500 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:46:34 has no hits.

BS12848.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:46 Download gff for BS12848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:55 Download gff for BS12848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 96..798 9..712 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:27 Download gff for BS12848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 110..805 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:46 Download gff for BS12848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 96..798 9..712 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:10 Download gff for BS12848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 110..805 17..712 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:10 Download gff for BS12848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11975516..11975714 514..712 100 <- Minus
3R 11976099..11976495 117..513 100 <- Minus
3R 11976989..11977088 17..116 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:27 Download gff for BS12848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7801238..7801436 514..712 100 <- Minus
arm_3R 7801821..7802217 117..513 100 <- Minus
arm_3R 7802711..7802810 17..116 100   Minus

BS12848.pep Sequence

Translation from 16 to 711

> BS12848.pep
MSGLMNGFLLLFACNLLLAVHVSANKQQKNQNQEIWEQDLSDTFKIEGSD
QGIQKVNLKCGADSMNVVLETEKPFMGVMYTRGSFYKQSAPCFMKPSSSQ
GSRTMEMNFQLDQCQTIRDGDLYTNIVVIQNDPELITPGDSAFSLECDFR
QPRNLDVEASMQARDRVATGSKITLTSPDPAAPTEHLHNSVVSNSDSVAY
IPKFSRPNRTIHLGSVEEVTLPSSSQARDEL*

BS12848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-PA 231 CG10005-PA 1..231 1..231 1193 100 Plus
CG10005-PB 182 CG10005-PB 1..166 1..166 866 100 Plus