Clone Sequence Records
BS12851.3prime Sequence
697 bp (696 high quality bases) assembled on 2006-10-13
> BS12851.3prime
ATGGTCTAGAAAGCTTTCAGCTTATACCTGCCGCCAAATACTGGTTATTG
TAATAATAGGCACATACACCCACTACAATAGAAATTGCTGTTGTCAATAT
CACCGGCTTTGCTGTTAAAATATTTGGAAGCCATTTCGTTATGATAGGAA
TTCTATTCGATGTGGCCGGTTGACGTCTTTTTACGATTAAAGCTTCATCG
GTTTTCCTTTTCCTCCTTTCTTGACAAATAAGTTCTTCAACATCTTTCTC
TATAAGTGTTAGGCTATATTTATTTAAAAGCGAACTGGATGTTTTCAAAA
GGTCCTCAAATGGTAAATCTTCTGGTATCACTGATAAGAGACAATGCACC
GATGCCATATCACAGTCCTCCTTTAGAATTTCATCTGATCGATAAAGTAA
AATCGCTGCTGTTACAAAGATTGATGTATAAATAGGCGATGCAAGGAAAT
AGTCATACAAGCGGACTACGGTTCTATAAGATGTTAAACTATGTCCGAAC
CAAGTCAAATACCACGGCAAAGAGAACAAAGTTCCCACAGTCGAGTTTTG
CAAGAACTGATAAAGTTCTGGGTTTTCAAACTTAATGATAGGCCAAATAA
ACATAAGTCGCCTTTGCGTGGCCTCCATAGTCTCCTGCATACATTCAGAA
AAATGTGTTGTAGAGAGCTGTTCCATTATTGCAAATGCGATTTCTTC
BS12851.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-PA | 1137 | CG17883-RA | 457..1137 | 697..17 | 3405 | 100 | Minus |
CG17883-PB | 849 | CG17883-RB | 457..825 | 697..329 | 1845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-RA | 1625 | CG17883-RA | 784..1464 | 697..17 | 3405 | 100 | Minus |
CG17883-RC | 1619 | CG17883-RC | 784..1458 | 697..17 | 3295 | 99.1 | Minus |
CG17883-RD | 1604 | CG17883-RD | 784..1443 | 697..17 | 3080 | 96.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4672694..4673062 | 697..329 | 1845 | 100 | Minus |
2R | 25286936 | 2R | 4673277..4673478 | 218..17 | 1010 | 100 | Minus |
2R | 25286936 | 2R | 4673113..4673223 | 329..219 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:13:15 has no hits.
BS12851.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:13 Download gff for
BS12851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-PA | 457..1137 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:50 Download gff for
BS12851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 784..1466 | 11..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:14 Download gff for
BS12851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 784..1466 | 11..697 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:14 Download gff for
BS12851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4673277..4673480 | 11..218 | 98 | | Minus |
2R | 4672694..4673062 | 329..697 | 100 | -> | Minus |
2R | 4673114..4673223 | 219..328 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:50 Download gff for
BS12851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 560199..560567 | 329..697 | 100 | -> | Minus |
arm_2R | 560619..560728 | 219..328 | 100 | -> | Minus |
arm_2R | 560782..560985 | 11..218 | 98 | | Minus |
BS12851.5prime Sequence
760 bp (692 high quality bases) assembled on 2006-10-13
> BS12851.5prime
GAAGTTATCAGTCGACATGATCAAAAATGAACAACGTCCCCTTAATTTTG
AAAAATGTCCGGAATCTGATGATGAGCTCAAGAAACGGTTGGAGATAGAA
AAATTAATTAATAAAAACATCGACAAAAATATTAGTTTTGATGTACTTGT
GAAGTTATCCCTGGCGCCTTACGGATTGGTTAATGACGATTTTAGAAGGA
TTTTATGGCCTCAGTTGGCAGGAGTCGACATTAACCATTTAGGACAAGCT
CCAACGCTCGATAAGTTCCAGTGCCATCCAGAATACAATCAAGTGGTGTT
AGATGTTAATCGTTCTTTAAAACGATTTCCACCAGGAATTCCGTACGAGC
AACGAATTGCACTGCAAGACCAACTTACTGTTCTGATTTTGCGAGTAATT
CAAAAGTATCCTAACTTGAGGTATTATCAAGGCTACCATGACGTGGCTGT
AACATTTCTGTTAGTGGTTGGCGAAGAAATCGCATTTGCAATAATGGAAC
AGCTCTCTACAACACATTTTTCTGAATGTATGCAGGAGACTATGGAGGCC
ACGCAAAGGCGACTTATGTTTATTTGGCCTATCATTAAGTTTGAAAAACC
CAGAACTTTATCAGTTCTTGCAAAACTCGACTGTGGGAACTTTGTTCTCT
TTGCCGTGGTATTTGACTTGGTTCGGACATAGTTTAACATCTTATAGAAC
CGTAATCCGCTTGTATGACTATTTCCTTGCATCGCCTATTTATACATCAA
TCTTTGTAAC
BS12851.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-PA | 1137 | CG17883-RA | 1..581 | 17..597 | 2905 | 100 | Plus |
CG17883-PB | 849 | CG17883-RB | 1..581 | 17..597 | 2905 | 100 | Plus |
CG17883-PA | 1137 | CG17883-RA | 578..743 | 595..760 | 805 | 99.3 | Plus |
CG17883-PB | 849 | CG17883-RB | 578..743 | 595..760 | 805 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-RD | 1604 | CG17883-RD | 328..1070 | 17..760 | 3680 | 99.7 | Plus |
CG17883-RC | 1619 | CG17883-RC | 328..1070 | 17..760 | 3680 | 99.7 | Plus |
CG17883-RB | 1680 | CG17883-RB | 328..1070 | 17..760 | 3680 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4672278..4672980 | 57..760 | 3455 | 99.7 | Plus |
2R | 25286936 | 2R | 4672180..4672221 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:47:37 has no hits.
BS12851.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:13 Download gff for
BS12851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-PB | 1..743 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:43 Download gff for
BS12851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RB | 322..1070 | 10..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:32 Download gff for
BS12851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RB | 322..1070 | 10..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:32 Download gff for
BS12851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4672174..4672219 | 10..56 | 93 | -> | Plus |
2R | 4672278..4672980 | 57..760 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:43 Download gff for
BS12851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 559679..559724 | 10..56 | 93 | -> | Plus |
arm_2R | 559783..560485 | 57..760 | 99 | | Plus |
BS12851.complete Sequence
1169 bp assembled on 2006-11-01
GenBank Submission: FJ638848
> BS12851.complete
GAAGTTATCAGTCGACATGATCAAAAATGAACAACGTCCCCTTAATTTTG
AAAAATGTCCGGAATCTGATGATGAGCTCAAGAAACGGTTGGAGATAGAA
AAATTAATTAATAAAAACATCGACAAAAATATTAGTTTTGATGTACTTGT
GAAGTTATCCCTGGCGCCTTACGGATTGGTTAATGACGATTTTAGAAGGA
TTTTATGGCCTCAGTTGGCAGGAGTCGACATTAACCATTTAGGACAAGCT
CCAACGCTCGATAAGTTCCAGTGCCATCCAGAATACAATCAAGTGGTGTT
AGATGTTAATCGTTCTTTAAAACGATTTCCACCAGGAATTCCGTACGAGC
AACGAATTGCACTGCAAGACCAACTTACTGTTCTGATTTTGCGAGTAATT
CAAAAGTATCCTAACTTGAGGTATTATCAAGGCTACCATGACGTGGCTGT
AACATTTCTGTTAGTGGTTGGCGAAGAAATCGCATTTGCAATAATGGAAC
AGCTCTCTACAACACATTTTTCTGAATGTATGCAGGAGACTATGGAGGCC
ACGCAAAGGCGACTTATGTTTATTTGGCCTATCATTAAGTTTGAAAACCC
AGAACTTTATCAGTTCTTGCAAAACTCGACTGTGGGAACTTTGTTCTCTT
TGCCGTGGTATTTGACTTGGTTCGGACATAGTTTAACATCTTATAGAACC
GTAGTCCGCTTGTATGACTATTTCCTTGCATCGCCTATTTATACATCAAT
CTTTGTAACAGCAGCGATTTTACTTTATCGATCAGATGAAATTCTAAAGG
AGGACTGTGATATGGCATCGGTGCATTGTCTCTTATCAGTGATACCAGAA
GATTTACCATTTGAGGACCTTTTGAAAACATCCAGTTCGCTTTTAAATAA
ATATAGCCTAACACTTATAGAGAAAGATGTTGAAGAACTTATTTGTCAAG
AAAGGAGGAAAAGGAAAACCGATGAAGCTTTAATCGTAAAAAGACGTCAA
CCGGCCACATCGAATAGAATTCCTATCATAACGAAATGGCTTCCAAATAT
TTTAACAGCAAAGCCGGTGATATTGACAACAGCAATTTCTATTGTAGTGG
GTGTATGTGCCTATTATTACAATAACCAGTATTTGGCGGCAGGTATAAGC
TGAAAGCTTTCTAGACCAT
BS12851.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-RA | 1137 | CG17883-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
CG17883-RC | 1131 | CG17883-PC | 1..1131 | 17..1153 | 5525 | 99.5 | Plus |
CG17883-RD | 1116 | CG17883-PD | 1..1116 | 17..1153 | 5335 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-RA | 1625 | CG17883-RA | 328..1464 | 17..1153 | 5685 | 100 | Plus |
CG17883-RC | 1619 | CG17883-RC | 328..1458 | 17..1153 | 5525 | 99.5 | Plus |
CG17883-RD | 1604 | CG17883-RD | 328..1443 | 17..1153 | 5335 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4672278..4673062 | 57..841 | 3925 | 100 | Plus |
2R | 25286936 | 2R | 4673277..4673478 | 952..1153 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 4673113..4673223 | 841..951 | 555 | 100 | Plus |
2R | 25286936 | 2R | 4672180..4672221 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:12:02 has no hits.
BS12851.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:49 Download gff for
BS12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 1..1137 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:59 Download gff for
BS12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 318..1462 | 10..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:50 Download gff for
BS12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 328..1463 | 17..1152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:49 Download gff for
BS12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 318..1462 | 10..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:33 Download gff for
BS12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 328..1463 | 17..1152 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:33 Download gff for
BS12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4672180..4672219 | 17..56 | 100 | -> | Plus |
2R | 4672278..4673062 | 57..841 | 100 | -> | Plus |
2R | 4673114..4673223 | 842..951 | 100 | -> | Plus |
2R | 4673277..4673477 | 952..1152 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:50 Download gff for
BS12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 559685..559724 | 17..56 | 100 | -> | Plus |
arm_2R | 559783..560567 | 57..841 | 100 | -> | Plus |
arm_2R | 560619..560728 | 842..951 | 100 | -> | Plus |
arm_2R | 560782..560982 | 952..1152 | 100 | | Plus |
BS12851.pep Sequence
Translation from 16 to 1152
> BS12851.pep
MIKNEQRPLNFEKCPESDDELKKRLEIEKLINKNIDKNISFDVLVKLSLA
PYGLVNDDFRRILWPQLAGVDINHLGQAPTLDKFQCHPEYNQVVLDVNRS
LKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLLV
VGEEIAFAIMEQLSTTHFSECMQETMEATQRRLMFIWPIIKFENPELYQF
LQNSTVGTLFSLPWYLTWFGHSLTSYRTVVRLYDYFLASPIYTSIFVTAA
ILLYRSDEILKEDCDMASVHCLLSVIPEDLPFEDLLKTSSSLLNKYSLTL
IEKDVEELICQERRKRKTDEALIVKRRQPATSNRIPIITKWLPNILTAKP
VILTTAISIVVGVCAYYYNNQYLAAGIS*
BS12851.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-PA | 378 | CG17883-PA | 1..378 | 1..378 | 1959 | 100 | Plus |
CG17883-PC | 376 | CG17883-PC | 1..376 | 1..378 | 1926 | 99.5 | Plus |
CG17883-PD | 371 | CG17883-PD | 1..371 | 1..378 | 1904 | 98.1 | Plus |
CG17883-PB | 282 | CG17883-PB | 1..282 | 1..282 | 1447 | 97.9 | Plus |