Clone BS12851 Report

Search the DGRC for BS12851

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG17883-RA
Protein status:BS12851.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12851.3prime Sequence

697 bp (696 high quality bases) assembled on 2006-10-13

> BS12851.3prime
ATGGTCTAGAAAGCTTTCAGCTTATACCTGCCGCCAAATACTGGTTATTG
TAATAATAGGCACATACACCCACTACAATAGAAATTGCTGTTGTCAATAT
CACCGGCTTTGCTGTTAAAATATTTGGAAGCCATTTCGTTATGATAGGAA
TTCTATTCGATGTGGCCGGTTGACGTCTTTTTACGATTAAAGCTTCATCG
GTTTTCCTTTTCCTCCTTTCTTGACAAATAAGTTCTTCAACATCTTTCTC
TATAAGTGTTAGGCTATATTTATTTAAAAGCGAACTGGATGTTTTCAAAA
GGTCCTCAAATGGTAAATCTTCTGGTATCACTGATAAGAGACAATGCACC
GATGCCATATCACAGTCCTCCTTTAGAATTTCATCTGATCGATAAAGTAA
AATCGCTGCTGTTACAAAGATTGATGTATAAATAGGCGATGCAAGGAAAT
AGTCATACAAGCGGACTACGGTTCTATAAGATGTTAAACTATGTCCGAAC
CAAGTCAAATACCACGGCAAAGAGAACAAAGTTCCCACAGTCGAGTTTTG
CAAGAACTGATAAAGTTCTGGGTTTTCAAACTTAATGATAGGCCAAATAA
ACATAAGTCGCCTTTGCGTGGCCTCCATAGTCTCCTGCATACATTCAGAA
AAATGTGTTGTAGAGAGCTGTTCCATTATTGCAAATGCGATTTCTTC

BS12851.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-PA 1137 CG17883-RA 457..1137 697..17 3405 100 Minus
CG17883-PB 849 CG17883-RB 457..825 697..329 1845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-RA 1625 CG17883-RA 784..1464 697..17 3405 100 Minus
CG17883-RC 1619 CG17883-RC 784..1458 697..17 3295 99.1 Minus
CG17883-RD 1604 CG17883-RD 784..1443 697..17 3080 96.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4672694..4673062 697..329 1845 100 Minus
2R 25286936 2R 4673277..4673478 218..17 1010 100 Minus
2R 25286936 2R 4673113..4673223 329..219 555 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:13:15 has no hits.

BS12851.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:13 Download gff for BS12851.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-PA 457..1137 17..697 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:50 Download gff for BS12851.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 784..1466 11..697 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:14 Download gff for BS12851.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 784..1466 11..697 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:14 Download gff for BS12851.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 4673277..4673480 11..218 98   Minus
2R 4672694..4673062 329..697 100 -> Minus
2R 4673114..4673223 219..328 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:50 Download gff for BS12851.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 560199..560567 329..697 100 -> Minus
arm_2R 560619..560728 219..328 100 -> Minus
arm_2R 560782..560985 11..218 98   Minus

BS12851.5prime Sequence

760 bp (692 high quality bases) assembled on 2006-10-13

> BS12851.5prime
GAAGTTATCAGTCGACATGATCAAAAATGAACAACGTCCCCTTAATTTTG
AAAAATGTCCGGAATCTGATGATGAGCTCAAGAAACGGTTGGAGATAGAA
AAATTAATTAATAAAAACATCGACAAAAATATTAGTTTTGATGTACTTGT
GAAGTTATCCCTGGCGCCTTACGGATTGGTTAATGACGATTTTAGAAGGA
TTTTATGGCCTCAGTTGGCAGGAGTCGACATTAACCATTTAGGACAAGCT
CCAACGCTCGATAAGTTCCAGTGCCATCCAGAATACAATCAAGTGGTGTT
AGATGTTAATCGTTCTTTAAAACGATTTCCACCAGGAATTCCGTACGAGC
AACGAATTGCACTGCAAGACCAACTTACTGTTCTGATTTTGCGAGTAATT
CAAAAGTATCCTAACTTGAGGTATTATCAAGGCTACCATGACGTGGCTGT
AACATTTCTGTTAGTGGTTGGCGAAGAAATCGCATTTGCAATAATGGAAC
AGCTCTCTACAACACATTTTTCTGAATGTATGCAGGAGACTATGGAGGCC
ACGCAAAGGCGACTTATGTTTATTTGGCCTATCATTAAGTTTGAAAAACC
CAGAACTTTATCAGTTCTTGCAAAACTCGACTGTGGGAACTTTGTTCTCT
TTGCCGTGGTATTTGACTTGGTTCGGACATAGTTTAACATCTTATAGAAC
CGTAATCCGCTTGTATGACTATTTCCTTGCATCGCCTATTTATACATCAA
TCTTTGTAAC

BS12851.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-PA 1137 CG17883-RA 1..581 17..597 2905 100 Plus
CG17883-PB 849 CG17883-RB 1..581 17..597 2905 100 Plus
CG17883-PA 1137 CG17883-RA 578..743 595..760 805 99.3 Plus
CG17883-PB 849 CG17883-RB 578..743 595..760 805 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-RD 1604 CG17883-RD 328..1070 17..760 3680 99.7 Plus
CG17883-RC 1619 CG17883-RC 328..1070 17..760 3680 99.7 Plus
CG17883-RB 1680 CG17883-RB 328..1070 17..760 3680 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4672278..4672980 57..760 3455 99.7 Plus
2R 25286936 2R 4672180..4672221 17..58 210 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:47:37 has no hits.

BS12851.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:13 Download gff for BS12851.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-PB 1..743 17..760 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:43 Download gff for BS12851.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-RB 322..1070 10..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:32 Download gff for BS12851.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-RB 322..1070 10..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:32 Download gff for BS12851.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 4672174..4672219 10..56 93 -> Plus
2R 4672278..4672980 57..760 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:43 Download gff for BS12851.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 559679..559724 10..56 93 -> Plus
arm_2R 559783..560485 57..760 99   Plus

BS12851.complete Sequence

1169 bp assembled on 2006-11-01

GenBank Submission: FJ638848

> BS12851.complete
GAAGTTATCAGTCGACATGATCAAAAATGAACAACGTCCCCTTAATTTTG
AAAAATGTCCGGAATCTGATGATGAGCTCAAGAAACGGTTGGAGATAGAA
AAATTAATTAATAAAAACATCGACAAAAATATTAGTTTTGATGTACTTGT
GAAGTTATCCCTGGCGCCTTACGGATTGGTTAATGACGATTTTAGAAGGA
TTTTATGGCCTCAGTTGGCAGGAGTCGACATTAACCATTTAGGACAAGCT
CCAACGCTCGATAAGTTCCAGTGCCATCCAGAATACAATCAAGTGGTGTT
AGATGTTAATCGTTCTTTAAAACGATTTCCACCAGGAATTCCGTACGAGC
AACGAATTGCACTGCAAGACCAACTTACTGTTCTGATTTTGCGAGTAATT
CAAAAGTATCCTAACTTGAGGTATTATCAAGGCTACCATGACGTGGCTGT
AACATTTCTGTTAGTGGTTGGCGAAGAAATCGCATTTGCAATAATGGAAC
AGCTCTCTACAACACATTTTTCTGAATGTATGCAGGAGACTATGGAGGCC
ACGCAAAGGCGACTTATGTTTATTTGGCCTATCATTAAGTTTGAAAACCC
AGAACTTTATCAGTTCTTGCAAAACTCGACTGTGGGAACTTTGTTCTCTT
TGCCGTGGTATTTGACTTGGTTCGGACATAGTTTAACATCTTATAGAACC
GTAGTCCGCTTGTATGACTATTTCCTTGCATCGCCTATTTATACATCAAT
CTTTGTAACAGCAGCGATTTTACTTTATCGATCAGATGAAATTCTAAAGG
AGGACTGTGATATGGCATCGGTGCATTGTCTCTTATCAGTGATACCAGAA
GATTTACCATTTGAGGACCTTTTGAAAACATCCAGTTCGCTTTTAAATAA
ATATAGCCTAACACTTATAGAGAAAGATGTTGAAGAACTTATTTGTCAAG
AAAGGAGGAAAAGGAAAACCGATGAAGCTTTAATCGTAAAAAGACGTCAA
CCGGCCACATCGAATAGAATTCCTATCATAACGAAATGGCTTCCAAATAT
TTTAACAGCAAAGCCGGTGATATTGACAACAGCAATTTCTATTGTAGTGG
GTGTATGTGCCTATTATTACAATAACCAGTATTTGGCGGCAGGTATAAGC
TGAAAGCTTTCTAGACCAT

BS12851.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-RA 1137 CG17883-PA 1..1137 17..1153 5685 100 Plus
CG17883-RC 1131 CG17883-PC 1..1131 17..1153 5525 99.5 Plus
CG17883-RD 1116 CG17883-PD 1..1116 17..1153 5335 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-RA 1625 CG17883-RA 328..1464 17..1153 5685 100 Plus
CG17883-RC 1619 CG17883-RC 328..1458 17..1153 5525 99.5 Plus
CG17883-RD 1604 CG17883-RD 328..1443 17..1153 5335 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4672278..4673062 57..841 3925 100 Plus
2R 25286936 2R 4673277..4673478 952..1153 1010 100 Plus
2R 25286936 2R 4673113..4673223 841..951 555 100 Plus
2R 25286936 2R 4672180..4672221 17..58 210 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:12:02 has no hits.

BS12851.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:49 Download gff for BS12851.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:59 Download gff for BS12851.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 318..1462 10..1159 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:50 Download gff for BS12851.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 328..1463 17..1152 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:49 Download gff for BS12851.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 318..1462 10..1159 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:33 Download gff for BS12851.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 328..1463 17..1152 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:33 Download gff for BS12851.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4672180..4672219 17..56 100 -> Plus
2R 4672278..4673062 57..841 100 -> Plus
2R 4673114..4673223 842..951 100 -> Plus
2R 4673277..4673477 952..1152 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:50 Download gff for BS12851.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 559685..559724 17..56 100 -> Plus
arm_2R 559783..560567 57..841 100 -> Plus
arm_2R 560619..560728 842..951 100 -> Plus
arm_2R 560782..560982 952..1152 100   Plus

BS12851.pep Sequence

Translation from 16 to 1152

> BS12851.pep
MIKNEQRPLNFEKCPESDDELKKRLEIEKLINKNIDKNISFDVLVKLSLA
PYGLVNDDFRRILWPQLAGVDINHLGQAPTLDKFQCHPEYNQVVLDVNRS
LKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLLV
VGEEIAFAIMEQLSTTHFSECMQETMEATQRRLMFIWPIIKFENPELYQF
LQNSTVGTLFSLPWYLTWFGHSLTSYRTVVRLYDYFLASPIYTSIFVTAA
ILLYRSDEILKEDCDMASVHCLLSVIPEDLPFEDLLKTSSSLLNKYSLTL
IEKDVEELICQERRKRKTDEALIVKRRQPATSNRIPIITKWLPNILTAKP
VILTTAISIVVGVCAYYYNNQYLAAGIS*

BS12851.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-PA 378 CG17883-PA 1..378 1..378 1959 100 Plus
CG17883-PC 376 CG17883-PC 1..376 1..378 1926 99.5 Plus
CG17883-PD 371 CG17883-PD 1..371 1..378 1904 98.1 Plus
CG17883-PB 282 CG17883-PB 1..282 1..282 1447 97.9 Plus