Clone Sequence Records
BS12852.complete Sequence
2009 bp assembled on 2009-12-07
GenBank Submission: KX800696
> BS12852.complete
GAAGTTATCAGTCGACATGCACAAGGAAAAAATTATTAATTCACAAAATG
CTAGCAAAATAAACCAAAAAGATCATAAACCCAATGGAAATACAAATGAA
AGTAGACATAAAACAGTGAGTTTAATAAACAAAAAAGATGACAAAGAATA
CGACCTTGTCCCACCTGATGGTGGTTGGGGTTGGTTAGTGCTGCTGGGCT
CGTGCTTGACTAACATTTTAATCCCTGGCACAATAAAAAGTTTTGGAGTA
TTATTTTCGGAGTTCACCGATGCATTCAACTCTTCTCCTACGAAGGCTGC
CTGGATACCAGCCCTGTGTTATTTTCTTTATAGTTCATTGGGCCCGGTTT
CAAGCATTCTATCTGTGAAGTACTCATATCGTACTGTCACCCTTCTTGGT
GGGGCATCTGCGTCACTGGGTATGATACTCTCCTTCTGGGCATCATCTAT
TGAGTTCTTGTATATCAGCTATGGCGTTTTGGTCGGAATCGGGGCTGGTC
TCTCTTTCCCCCCCACAGTTTACATTGTGACGTCGTATTTTGCGAAACTA
CGCGGATTAGCGAATGGCCTCTGCATTTCCGGTAGTGCTTTAGGCAGCAT
AATTTTGCCGCCCCTTCTTCGTTGGCTACTAGAGACCTATGGCTATCACG
GCTCCTGCCTAATTATGGGTGGCATTACTTTGAACGTATTTGTCGCTGCT
CTTTTCTATGAGCCTGTTGAACAACATATGGTACGAGTACCTCGTGCTCG
CCAGGCTTTGGAAAATATTCCAGAAGAGGAGGATATTGGAATCGTAATGA
AGTTCGAAAATGTTGACGAGCCGGTTCCCAAAAATGAGCCGGCTGACAAG
CCATTGTTACCATATAATTCGCCTCCTTCTCCTCTGTATTTACCTGGCGA
TGAGAGGCTGCAGTTTGTGCGTAGCGCATCCGCAGCTGTTGTCCAAAGCT
ACTCAAAGTCTGGAGACGAGTTTCAGTCTCGATCGCGTAAGATCAGTACG
CCGGTGAGGTTACCCCAGAGAAATCAGACTTTTACGCCTGGCCAACTTAA
CTCGCAATCATCATTGTACGCTGTGCCAGAGGGGCGATCAAGCTCCAACA
AACTGACTCTGCGAAATTCGTCAAAGTCACGGTTATCCAAGCGCTCGCCT
TCAACAAGCAGTTTTTTATACGTCAGCACACCATATCATGGCAGCACATT
GTCGTTTCAACCGAAAGAATTTTCCTCGCATTTGTCCCTTCGCTCTATGG
GGAGTAGTGGAACGGGACATGCAGGCGACTCAACCGGGCAAGATGGATCT
TATGCCGACGTCGACGCCCGAGGCCAGGCACAACAGCCGCAACGATCGAA
GTTTTTTGATCTAAGCCTTTTAAAAGACCCTATGTACTTGGTCATACTAA
TTTCGAATTCGACGAATGCCATAAGCTACACGAACTTTATTATATTGCTG
CCCAGTTTTGGAGAAGCCAGGGGCTTTAACAAATCATTATCTGCATATTT
GCTTTCAGTTGTATCAGCCACGGATCTAATTGGACGTATTGGCGGGTCAG
CACTTTCGGACATGGGGTACATACCTAAGACCTGGTACTTTGTTGGTGGC
TTGTCCATATCGGGGCTTTCTCTTGCCCTTCTGCCTTTTGCATGGACATA
CAGCTCTGTATGTTTTTGGTGTGCACTCTTTGGGTTAGCTTCTGGTATTT
ACGTCGGAATAACTGCAGTAATCATGGCAGACATGCTTGGAACGGAACGC
TTGACATCATCGTATGGCATCAGCCTTTTCGTTAATGGCTTGTTGCAGTT
GGTTGGGCCGCCATTATGTAACTACTGGTTCGAGGCGGTCAATGATTATA
ATCCTCTCTTCCACGCCCTCGGCTTAACGCTCCTGGCTGGAGCTAGCCTT
TGGAGTTTTATGCCATGGATTAACCGACGCAAAGCTAATGCGGAGGAGCA
ACTAGATGCACAAATCGAAAAAGCGGCTGTCGATAGCTACTAAAAGCTTT
CTAGACCAT
BS12852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-RB | 1977 | CG11665-PB | 1..1977 | 17..1993 | 9885 | 100 | Plus |
| CG11665-RA | 1977 | CG11665-PA | 1..1977 | 17..1993 | 9885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-RB | 3393 | CG11665-RB | 320..2298 | 16..1994 | 9895 | 100 | Plus |
| CG11665-RA | 2635 | CG11665-RA | 320..2298 | 16..1994 | 9895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5642010..5643537 | 1994..467 | 7640 | 100 | Minus |
| 2R | 25286936 | 2R | 5643816..5644045 | 342..113 | 1150 | 100 | Minus |
| 2R | 25286936 | 2R | 5643592..5643719 | 468..341 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 5647722..5647822 | 116..16 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:19:46 has no hits.
BS12852.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:22 Download gff for
BS12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 289..2263 | 17..1991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:34 Download gff for
BS12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 321..2295 | 17..1991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:20 Download gff for
BS12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 289..2263 | 17..1991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:04 Download gff for
BS12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 321..2295 | 17..1991 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:04 Download gff for
BS12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5642013..5643535 | 469..1991 | 100 | <- | Minus |
| 2R | 5643592..5643718 | 342..468 | 100 | <- | Minus |
| 2R | 5643817..5644041 | 117..341 | 100 | <- | Minus |
| 2R | 5647722..5647821 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:34 Download gff for
BS12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1529518..1531040 | 469..1991 | 100 | <- | Minus |
| arm_2R | 1531097..1531223 | 342..468 | 100 | <- | Minus |
| arm_2R | 1531322..1531546 | 117..341 | 100 | <- | Minus |
| arm_2R | 1535227..1535326 | 17..116 | 100 | | Minus |
BS12852.3prime Sequence
835 bp (695 high quality bases) assembled on 2006-10-13
> BS12852.3prime
ATGGTCTAGAAAGCTTTTAGTAGCTATCGACAGCCGCTTTTTCGATTTGT
GCATCTAGTTGCTCCTCCGCATTAGCTTTGCGTCGGTTAATCCATGGCAT
AAAACTCCAAAGGCTAGCTCCAGCCAGGAGCGTTAAGCCGAGGGCGTGGA
AGAGAGGATTATAATCATTGACCGCCTCGAACCAGTAGTTACATAATGGC
GGCCCAACCAACTGCAACAAGCCATTAACGAAAAGGCTGATGCCATACGA
TGATGTCAAGCGTTCCGTTCCAAGCATGTCTGCCATGATTACTGCAGTTA
TTCCGACGTAAATACCAGAAGCTAACCCAAAGAGTGCACACCAAAAACAT
ACAGAGCTGTATGTCCATGCAAAAGGCAGAAGGGCAAGAGAAAGCCCCGA
TATGGACAAGCCACCAACAAAGTACCAGGTCTTAGGTATGTACCCCATGT
CCGAAAGTGCTGACCCGCCAATACGTCCAATTAGATCCGTGGCTGATACA
ACTGAAAGCAAATATGCAGATAATGATTTGTTAAAGCCCCTGGCTTCTCC
AAAACTGGGCAGCAATATAATAAAGTTCGTGTAGCTTATGGCATTCGTCG
AATTCGAAATTAGTATGACCAAGTACATAGGGTCTTTTAAAAGGCTTAGA
TCAAAAAACTTCGATCGTTGCGGCTGTTGTGCCTGGCCTCGGGCGTCGAC
GTCGGCATAAGATCCATCTTGCCCGGTTGAGTCGCCTGCATGTCCCGTTC
CACTACTCCCCATTAAACGAAGGGACAAATGCGAGGAAAAATCCTTTCGG
TTGAAACGACAATGTGCTGCCATGATATGGTGTGC
BS12852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-PA | 1977 | CG11665-RA | 1231..1977 | 763..17 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-RB | 3393 | CG11665-RB | 1480..2298 | 835..16 | 4015 | 99.4 | Minus |
| CG11665-RA | 2635 | CG11665-RA | 1480..2298 | 835..16 | 4015 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5642010..5642828 | 16..835 | 3990 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:55:42 has no hits.
BS12852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:14 Download gff for
BS12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-PA | 1160..1977 | 17..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:59:56 Download gff for
BS12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 1480..2298 | 16..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:33:17 Download gff for
BS12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 1480..2298 | 16..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:33:17 Download gff for
BS12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5642010..5642828 | 16..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:59:56 Download gff for
BS12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1529515..1530333 | 16..835 | 99 | | Plus |
BS12852.pep Sequence
Translation from 16 to 1992
> BS12852.pep
MHKEKIINSQNASKINQKDHKPNGNTNESRHKTVSLINKKDDKEYDLVPP
DGGWGWLVLLGSCLTNILIPGTIKSFGVLFSEFTDAFNSSPTKAAWIPAL
CYFLYSSLGPVSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYI
SYGVLVGIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPL
LRWLLETYGYHGSCLIMGGITLNVFVAALFYEPVEQHMVRVPRARQALEN
IPEEEDIGIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDERLQF
VRSASAAVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQLNSQSSL
YAVPEGRSSSNKLTLRNSSKSRLSKRSPSTSSFLYVSTPYHGSTLSFQPK
EFSSHLSLRSMGSSGTGHAGDSTGQDGSYADVDARGQAQQPQRSKFFDLS
LLKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFNKSLSAYLLSVVS
ATDLIGRIGGSALSDMGYIPKTWYFVGGLSISGLSLALLPFAWTYSSVCF
WCALFGLASGIYVGITAVIMADMLGTERLTSSYGISLFVNGLLQLVGPPL
CNYWFEAVNDYNPLFHALGLTLLAGASLWSFMPWINRRKANAEEQLDAQI
EKAAVDSY*
BS12852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-PB | 658 | CG11665-PB | 1..658 | 1..658 | 3400 | 100 | Plus |
| CG11665-PA | 658 | CG11665-PA | 1..658 | 1..658 | 3400 | 100 | Plus |
| Sln-PA | 855 | CG8271-PA | 225..842 | 49..638 | 651 | 30.2 | Plus |
| Mct1-PB | 626 | CG3456-PB | 21..616 | 42..645 | 647 | 28.1 | Plus |
| Mct1-PA | 626 | CG3456-PA | 21..616 | 42..645 | 647 | 28.1 | Plus |
