Clone BS12854 Report

Search the DGRC for BS12854

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:54
Vector:pDNR-Dual
Associated Gene/Transcriptpigs-RA
Protein status:BS12854.pep: full length peptide match
Sequenced Size:2966

Clone Sequence Records

BS12854.complete Sequence

2966 bp assembled on 2009-12-07

GenBank Submission: KX803191

> BS12854.complete
GAAGTTATCAGTCGACATGGCCATGTTAGAGGCGCGGCCATATAGGCCAT
TTAAATCCAGTGAGGAATATCTGGAGGCCATGAGGGAGGATTTGGCCGAG
TGGCTAAGCACACTCTATCCAGAGCTGAGCATCAATGCCGATAACTTTAT
GGATCGTTTGGACACGGGAGTAGCATTGTGCAAGCACGCAAATTATGTGA
GACAGGCGGCTGTGGATTATCTGGCACGGCGACAGGCCCGCAACAAATCG
ATGACCCGCTCGATGACCTCGGGCCTGGCGGGTCCCATTCTGGCCATGGG
CAATGTCCACTACCTTCCGGCAGCCAAGAGTGGCACCTTCTTTGCCCGCG
ACAATGTTTCCAACTTTATAACCTGGTGCAGAAAGAGCCTAAAGATCATC
GAGTGCCTGCTGTTCGAAACGGACGATCTGATCATGCGCAAAAACGAGAA
GCATGTGATCCTGTGCCTTCTGGAGGTGGCACGTCGGGGAGCCAAGTTTG
GAATGTTGGCTCCCATGCTGGTGCAAATGGAGCGACAAATCGATCGGGAG
ATCGCCGCGGACATCAAGGCCAATGGAGCTGGCTGCTCGGAAAATGGCAC
CCAAACGGATGCACTGGAGACCGGAAATAGTAGTGCCGCCACAATGACGA
CAATAACGACGACCACAGTGGAAACGGATCTATATGATGACAGCGACGAT
TCGGAGACCGAGGATGATGGCGACCAGAATCCCGTGCTGATGTACGGACC
ACAGCCCCAGATAATCACCAATGATCTGAAGAGCCTCGACGAAATGGTCA
GAGATCTTGTGGAGAAGTGCACATGCCCCTCACAATTTCCCATGGTCAGA
GTGTCGGAGGGCAAGTATCGTATTGGCGACACCAAAGTTCTCATCTTTGT
GCGGATCCTTCGTTCCCACGTGATGGTGCGCGTCGGTGGCGGATGGGACA
CACTATCCCACTATCTGGACAAGCACGATCCGTGCCGCTGCCGTGCCCAA
CATCGCAGCTCCGTGGCAGCTCGCCTCATTCCCCGTCAGTCGCCGAATCA
CAACCCGAGCAACGGCATCGAGCTCCACAAGGCGCAGGTGATATTCGAGA
GGTCACCTCCAGCAGCTCGACGTGTTTTCAACAGTCCCAATTGCAATGGT
GGACCCGGAACAGGATCATCGTGTGGAACGGGAGTTGTGGGCGTGGCCGT
GCCTCCAACTTTACAGAACGGTCACAGTCTGTCGCCGAATTCGGGAAAAT
ACCGCAGTCGCAGTCCAACACCACAGCGCAAGTTCCTCAACCAGCAGGCC
AACGGAGGAGGCATTGCATCCGCGACGGGATCCAGTCAGACAGTCACCAC
AGACACCTCCAGCGGTCAGCTGCTCGGATCGCCCAGCTTGGCCAGACGCT
CCATGTCACCAAGTCCACGTCGACTAATCGATATGCGCAAGAAACAGAGC
TCCTTGGATTCGTACAGTAGTGGTCCGAAATCGCTGCCCGGCTACAGTTG
CTCCATGGAGGAGGCAAACGGTGGATCTGGTGTCGGATCGGCGGCTGGAG
GTGTCAGCTCAGGATCCGCTGGATCGGGAGTCGCGGGCGAACAGGGTGGC
GCCAACAAATTCGAGAACATCAGCGATAATGGCAGTGAGATCAGTGACGA
AGGATACCGCAGTCTGGGAGTCATCCAATCGGGAGCCCAAAAACGAGAGT
CCCTGCATAGTCAGGCTTCCATTGAGGACGCTGAAAGCAATGCGCGTCTG
GATCAGACTTCAAGTGACTCGCAAATCTCGCCCTCTGATGAGCCGGCGGA
GAAGGCCACCACGGACATTCTAGAAGAGGAGGATCTAAATGGCCAAGATC
GAGAGGAGGACCAAGAGGACTACTCGGTGTGCGATGGCCCACAATCGCTG
CCGGCAATTCTCAGCGGAGCCCATAAGCTAAGCGACAAATTTGAGCAATC
CGGTGTCTTTATAACCGACGACGAAATCACCGTGGACATAGCCAAGACCG
AGGATCAGTCGGTGGCTAACACAATGGGAAATCCAACACCCAATCTCAGC
AAGATTCCACGCTCTCCATTGGCGCAGCGTCGTCGCCGAAGCATCGATAA
TAGTACGTGTGGCGGTGCTGGCGGAAGTCTACAGGATTTGAGCAGCCGGT
CTGGTCTACCGGCTCCAGCTTTTAGCCGCAAACAACCGGTTTATCGATCC
GTTCGAACTCGCAACTCAACCGGAGCCACTACAACGCCGGTGGCACCTCC
CCGATCCCGTCAAGCCACCCAATTGCCTATGGTGCGTGATGTCACGAATA
CGTGGAGCGGCCGAACCACGGGAGCACCAAAGCGAAGACCTCCCTGCACC
GCCGATACCTTTGTGGCACCCACAAATGGAACAGGACCAGCTGGATCCTT
CGAGCGCAATGGCAAAGGACGCTCATCGCAAATTCTCTACGACAGCAACG
GACGCCGGGTGAGGAGCGGTGCACCGGGATGCACCAGTTCGCTAACCACG
TCGCCCGTTAAGAATCACGCCTCCTCGCCACTTGCCCAACAACTCCTGGA
GGCGGCCAGCAGTGCCAAGAACGATGCCCAAATTTTGGAGAAGATGAAGT
CACTACTCTCACGCTATGCGGCTGGTAATCAAACAAAGGCAGGAGTTGGA
GCAACGGCAACAGCAGCGAATAAGATCAACAGCAATGGGAAAAAGACACC
GGTCTACGAGGACTTCACTACGGCCTGGGTGCACAGCAATGGCAATCTGG
AGCGTTCGGAGAGCTGTTCTCCACCAGCCAAGGCGCGTTCCAAGCGCAGT
TCCGCCGCCAGTTCCTGCGAAAGTAACAATTCAAATGCTGGAGCTGGATC
CGGAGCAGCTGCTGGATCGGCCAGCGTGGTATCGCCCAGGCGAGAGAGGG
GCATGTCCAAGATTCCGGCGCCAGTGCGTCATCATACAGAGCTTTACTAG
AAGCTTTCTAGACCAT

BS12854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
pigs-RC 2934 CG3973-PC 1..2934 17..2950 14640 99.9 Plus
pigs-RB 2934 CG3973-PB 1..2934 17..2950 14640 99.9 Plus
pigs-RA 2934 CG3973-PA 1..2934 17..2950 14640 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
pigs-RC 6318 CG3973-RC 783..3720 17..2954 14645 99.9 Plus
pigs-RB 6272 CG3973-RB 737..3674 17..2954 14645 99.9 Plus
pigs-RA 5401 CG3973-RA 783..3720 17..2954 14645 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6649205..6650417 1742..2954 6035 99.8 Plus
X 23542271 X 6648500..6649142 1100..1742 3200 99.8 Plus
X 23542271 X 6645042..6645340 500..798 1495 100 Plus
X 23542271 X 6648184..6648383 904..1103 1000 100 Plus
X 23542271 X 6644560..6644758 183..381 995 100 Plus
X 23542271 X 6630938..6631105 17..184 840 100 Plus
X 23542271 X 6644823..6644947 377..501 625 100 Plus
X 23542271 X 6648016..6648124 796..904 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:08:19 has no hits.

BS12854.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:18 Download gff for BS12854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3973-RA 780..3713 17..2950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:40 Download gff for BS12854.complete
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 783..3716 17..2950 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:40 Download gff for BS12854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3973-RA 780..3713 17..2950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:34 Download gff for BS12854.complete
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 783..3716 17..2950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:34 Download gff for BS12854.complete
Subject Subject Range Query Range Percent Splice Strand
X 6630938..6631105 17..184 100 -> Plus
X 6644562..6644758 185..381 100 -> Plus
X 6644828..6644946 382..500 100 -> Plus
X 6645043..6645338 501..796 100 -> Plus
X 6648017..6648124 797..904 100 -> Plus
X 6648185..6648381 905..1101 100 -> Plus
X 6648502..6649142 1102..1742 99 -> Plus
X 6649206..6650413 1743..2950 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:40 Download gff for BS12854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6524971..6525138 17..184 100 -> Plus
arm_X 6538595..6538791 185..381 100 -> Plus
arm_X 6538861..6538979 382..500 100 -> Plus
arm_X 6539076..6539371 501..796 100 -> Plus
arm_X 6542050..6542157 797..904 100 -> Plus
arm_X 6542218..6542414 905..1101 100 -> Plus
arm_X 6542535..6543175 1102..1742 99 -> Plus
arm_X 6543239..6544446 1743..2950 99   Plus

BS12854.3prime Sequence

851 bp (790 high quality bases) assembled on 2006-10-13

> BS12854.3prime
ATGGTCTAGAAAGCTTCTAGTAAAGCTCTGTATGATGACGCACTGGCGCC
GGAATCTTGGACATGCCCCTCTCTCGCCTGGGCGATACCACGCTGGCCGA
TCCAGCAGCTGCTCCGGATCCAGCTCCAGCATTTGAATTGTTACTTTCGC
AGGAACTGGCGGCGGAACTGCGCTTGGAACGCGCCTTGGCTGGTGGAGAA
CAGCTCTCCGAACGCTCCAGATTGCCATTGCTGTGCACCCAGGCCGTAGT
GAAGTCCTCGTAGACCGGTGTCTTTTTCCCATTGCTGTTGATCTTATTCG
CTGCTGTTGCCGTTGCTCCAACTCCTGCCTTTGTTTGATTACCAGCCGCA
TAGCGTGAGAGTAGTGACTTCATCTTCTCCAAAATTTGGGCATCGTTCTT
GGCACTGCTGGCCGCCTCCAGGAGTTGTTGGGCAAGTGGCGAGGAGGCGT
GATTCTTAACGGGCGACGTGGTTAGCGAACTGGTGCATCCCGGTGCACCG
CTCCTCACCCGGCGTCCGTTGCTGTCGTAGAGAATTTGCGATGAGCGTCC
TTTGCCATTGCGCTCGAAGGATCCAGCTGGTCCTGTTCCATTTGTGGGTG
CCACAAAGGTATCGGCGGTGCAGGGAGGTCTTCGCTTTGGTGCTCCCGTG
GTTCGGCCGCTCCACGTATTCGTGACATCACGCACCATAGGCAATTGGGT
GGCTTGACGGGATCGGGGAGGTGCCACCGGCGTTGTAGTGGCTCCGGTTG
AGTTGCGAGTTCGAACGGATCGATAAACCGGTTGTTTGCGGCTAAAAGCT
GGAGCCGGTAGACCAGACCGGCTGCTCAAATCCTGTAGACTTCCGCCAGC
A

BS12854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3973-PA 2934 CG3973-RA 2100..2934 851..17 4150 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
pigs-RC 6318 CG3973-RC 2882..3720 851..13 4165 99.8 Minus
pigs-RB 6272 CG3973-RB 2836..3674 851..13 4165 99.8 Minus
pigs-RA 5401 CG3973-RA 2882..3720 851..13 4165 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6649579..6650417 851..13 4165 99.8 Minus
Blast to na_te.dros performed 2015-02-13 12:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2398 335..271 126 70.8 Minus

BS12854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:15 Download gff for BS12854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3973-PA 2101..2934 17..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:37 Download gff for BS12854.3prime
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 2883..3720 13..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:40 Download gff for BS12854.3prime
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 2883..3720 13..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:40 Download gff for BS12854.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6649580..6650417 13..850 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:37 Download gff for BS12854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6543613..6544450 13..850 99   Minus

BS12854.5prime Sequence

861 bp (759 high quality bases) assembled on 2006-10-13

> BS12854.5prime
GAAGTTATCAGTCGACATGGCCATGTTAGAGGCGCGGCCATATAGGCCAT
TTAAATCCAGTGAGGAATATCTGGAGGCCATGAGGGAGGATTTGGCCGAG
TGGCTAAGCACACTCTATCCAGAGCTGAGCATCAATGCCGATAACTTTAT
GGATCGTTTGGACACGGGAGTAGCATTGTGCAAGCACGCAAATTATGTGA
GACAGGCGGCTGTGGATTATCTGGCACGGCGACAGGCCCGCAACAAATCG
ATGACCCGCTCGATGACCTCGGGCCTGGCGGGTCCCATTCTGGCCATGGG
CAATGTCCACTACCTTCCGGCAGCCAAGAGTGGCACCTTCTTTGCCCGCG
ACAATGTTTCCAACTTTATAACCTGGTGCAGAAAGAGCCTAAAGATCATC
GAGTGCCTGCTGTTCGAAACGGACGATCTGATCATGCGCAAAAACGAGAA
GCATGTGATCCTGTGCCTTCTGGAGGTGGCACGTCGGGGAGCCAAGTTTG
GAATGTTGGCTCCCATGCTGGTGCAAATGGAGCGACAAATCGATCGGGAG
ATCGCCGCGGACATCAAGGCCAATGGAGCTGGCTGCTCGGAAAATGGCAC
CCAAACGGATGCACTGGAGACCGGAAATAGTAGTGCCGCCACAATGACGA
CAATAACGACGACCACAGTGGAAACGGATCTATATGATGACAGCGACGAT
TCGGAGACCGAGGATGATGGCGACCAGAATCCCGTGCTGATGTACGGACC
ACAGCCCCAGATAATCACCAATGATCTGAAGAGCCTCGACGAAATGGTCA
GAGATCTTGTGGAGAAGTGCACATGCCCCTCACAATTTCCCATGGTCAGA
GTGTCGGAGGG

BS12854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3973-PA 2934 CG3973-RA 1..845 17..861 4225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
pigs-RC 6318 CG3973-RC 783..1627 17..861 4225 100 Plus
pigs-RB 6272 CG3973-RB 737..1581 17..861 4225 100 Plus
pigs-RA 5401 CG3973-RA 783..1627 17..861 4225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6645042..6645340 500..798 1495 100 Plus
X 23542271 X 6644560..6644758 183..381 995 100 Plus
X 23542271 X 6630938..6631105 17..184 840 100 Plus
X 23542271 X 6644823..6644947 377..501 625 100 Plus
X 23542271 X 6648016..6648081 796..861 330 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:51:57 has no hits.

BS12854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:16 Download gff for BS12854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3973-PA 1..845 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:39:12 Download gff for BS12854.5prime
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 783..1627 17..861 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:51 Download gff for BS12854.5prime
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 783..1627 17..861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:51 Download gff for BS12854.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6630938..6631105 17..184 100 -> Plus
X 6644562..6644758 185..381 100 -> Plus
X 6644828..6644946 382..500 100 -> Plus
X 6645043..6645338 501..796 100 -> Plus
X 6648017..6648081 797..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:39:12 Download gff for BS12854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6524971..6525138 17..184 100 -> Plus
arm_X 6538595..6538791 185..381 100 -> Plus
arm_X 6538861..6538979 382..500 100 -> Plus
arm_X 6539076..6539371 501..796 100 -> Plus
arm_X 6542050..6542114 797..861 100   Plus

BS12854.pep Sequence

Translation from 16 to 2949

> BS12854.pep
MAMLEARPYRPFKSSEEYLEAMREDLAEWLSTLYPELSINADNFMDRLDT
GVALCKHANYVRQAAVDYLARRQARNKSMTRSMTSGLAGPILAMGNVHYL
PAAKSGTFFARDNVSNFITWCRKSLKIIECLLFETDDLIMRKNEKHVILC
LLEVARRGAKFGMLAPMLVQMERQIDREIAADIKANGAGCSENGTQTDAL
ETGNSSAATMTTITTTTVETDLYDDSDDSETEDDGDQNPVLMYGPQPQII
TNDLKSLDEMVRDLVEKCTCPSQFPMVRVSEGKYRIGDTKVLIFVRILRS
HVMVRVGGGWDTLSHYLDKHDPCRCRAQHRSSVAARLIPRQSPNHNPSNG
IELHKAQVIFERSPPAARRVFNSPNCNGGPGTGSSCGTGVVGVAVPPTLQ
NGHSLSPNSGKYRSRSPTPQRKFLNQQANGGGIASATGSSQTVTTDTSSG
QLLGSPSLARRSMSPSPRRLIDMRKKQSSLDSYSSGPKSLPGYSCSMEEA
NGGSGVGSAAGGVSSGSAGSGVAGEQGGANKFENISDNGSEISDEGYRSL
GVIQSGAQKRESLHSQASIEDAESNARLDQTSSDSQISPSDEPAEKATTD
ILEEEDLNGQDREEDQEDYSVCDGPQSLPAILSGAHKLSDKFEQSGVFIT
DDEITVDIAKTEDQSVANTMGNPTPNLSKIPRSPLAQRRRRSIDNSTCGG
AGGSLQDLSSRSGLPAPAFSRKQPVYRSVRTRNSTGATTTPVAPPRSRQA
TQLPMVRDVTNTWSGRTTGAPKRRPPCTADTFVAPTNGTGPAGSFERNGK
GRSSQILYDSNGRRVRSGAPGCTSSLTTSPVKNHASSPLAQQLLEAASSA
KNDAQILEKMKSLLSRYAAGNQTKAGVGATATAANKINSNGKKTPVYEDF
TTAWVHSNGNLERSESCSPPAKARSKRSSAASSCESNNSNAGAGSGAAAG
SASVVSPRRERGMSKIPAPVRHHTELY*

BS12854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
pigs-PC 977 CG3973-PC 1..977 1..977 5032 100 Plus
pigs-PB 977 CG3973-PB 1..977 1..977 5032 100 Plus
pigs-PA 977 CG3973-PA 1..977 1..977 5032 100 Plus
shot-PAB 4100 CG18076-PAB 3764..4013 252..521 230 27.7 Plus
shot-PC 5160 CG18076-PC 4802..5051 252..521 230 27.7 Plus