Clone Sequence Records
BS12856.5prime Sequence
549 bp (549 high quality bases) assembled on 2006-10-13
> BS12856.5prime
GAAGTTATCAGTCGACATGGCCAAGATATTGCCCACCGATGGCATCTGGA
TACCGGAGTCGTGCAGCTTTCCGGAGGATGTGATGATCGATATGATGGAG
GGACTATTCCGCGATGTGCCAAACCTAACGCACAAGGAGTACCTGGCGCT
GGCCGACCTGCAATCTAGATGGATGGCGAAGCTGGCCAACCGACAGCCGG
AATCGAATCCCCTGCCGCCAAAGCCAAAGAAGCGTAAGAAAATCGCTCCA
AAGAAGCAGGACCAGCCTGTCGAGGAGAAGGGCAGCGAAGTCGACATCTA
CGATGTGGACGACAACGAGATGGTCAACAATCGCATCTACATTCCGCGAC
TGCGTTCCGCTTGGAGAGCTCGCTATTTCAACATTATGATGCGCGCCTTT
GTCATCAAACGGGGACTATTGAATAAGCACATTAACTGGCAGATTCTCGA
CAAGATCATGGCAGCCCCCGACGCAGAGGGACAAGCCGAGCTTCAGGCGT
TTGTTGACAAAGTGGTCGCAGGCCAGGAAATGTAGAAGCTTTCTAGACC
BS12856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12721-PA | 519 | CG12721-RA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12721-RA | 811 | CG12721-RA | 88..607 | 16..535 | 2600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12072212..12072731 | 535..16 | 2600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:40:22 has no hits.
BS12856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:17 Download gff for
BS12856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-PA | 1..519 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:08 Download gff for
BS12856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-RA | 88..612 | 16..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:51 Download gff for
BS12856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-RA | 88..612 | 16..541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:51 Download gff for
BS12856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12072207..12072731 | 16..541 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:08 Download gff for
BS12856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11966240..11966764 | 16..541 | 99 | | Minus |
BS12856.3prime Sequence
549 bp (549 high quality bases) assembled on 2006-10-13
> BS12856.3prime
ATGGTCTAGAAAGCTTCTACATTTCCTGGCCTGCGACCACTTTGTCAACA
AACGCCTGAAGCTCGGCTTGTCCCTCTGCGTCGGGGGCTGCCATGATCTT
GTCGAGAATCTGCCAGTTAATGTGCTTATTCAATAGTCCCCGTTTGATGA
CAAAGGCGCGCATCATAATGTTGAAATAGCGAGCTCTCCAAGCGGAACGC
AGTCGCGGAATGTAGATGCGATTGTTGACCATCTCGTTGTCGTCCACATC
GTAGATGTCGACTTCGCTGCCCTTCTCCTCGACAGGCTGGTCCTGCTTCT
TTGGAGCGATTTTCTTACGCTTCTTTGGCTTTGGCGGCAGGGGATTCGAT
TCCGGCTGTCGGTTGGCCAGCTTCGCCATCCATCTAGATTGCAGGTCGGC
CAGCGCCAGGTACTCCTTGTGCGTTAGGTTTGGCACATCGCGGAATAGTC
CCTCCATCATATCGATCATCACATCCTCCGGAAAGCTGCACGACTCCGGT
ATCCAGATGCCATCGGTGGGCAATATCTTGGCCATGTCGACTGATAACT
BS12856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12721-PA | 519 | CG12721-RA | 1..519 | 535..17 | 2595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12721-RA | 811 | CG12721-RA | 88..607 | 536..17 | 2600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12072212..12072731 | 17..536 | 2600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:43:59 has no hits.
BS12856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:17 Download gff for
BS12856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-PA | 1..519 | 17..535 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:43 Download gff for
BS12856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-RA | 88..612 | 11..536 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:13 Download gff for
BS12856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-RA | 88..612 | 11..536 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:13 Download gff for
BS12856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12072207..12072731 | 11..536 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:43 Download gff for
BS12856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11966240..11966764 | 11..536 | 99 | | Plus |
BS12856.complete Sequence
551 bp assembled on 2006-11-01
GenBank Submission: FJ637315
> BS12856.complete
GAAGTTATCAGTCGACATGGCCAAGATATTGCCCACCGATGGCATCTGGA
TACCGGAGTCGTGCAGCTTTCCGGAGGATGTGATGATCGATATGATGGAG
GGACTATTCCGCGATGTGCCAAACCTAACGCACAAGGAGTACCTGGCGCT
GGCCGACCTGCAATCTAGATGGATGGCGAAGCTGGCCAACCGACAGCCGG
AATCGAATCCCCTGCCGCCAAAGCCAAAGAAGCGTAAGAAAATCGCTCCA
AAGAAGCAGGACCAGCCTGTCGAGGAGAAGGGCAGCGAAGTCGACATCTA
CGATGTGGACGACAACGAGATGGTCAACAATCGCATCTACATTCCGCGAC
TGCGTTCCGCTTGGAGAGCTCGCTATTTCAACATTATGATGCGCGCCTTT
GTCATCAAACGGGGACTATTGAATAAGCACATTAACTGGCAGATTCTCGA
CAAGATCATGGCAGCCCCCGACGCAGAGGGACAAGCCGAGCTTCAGGCGT
TTGTTGACAAAGTGGTCGCAGGCCAGGAAATGTAGAAGCTTTCTAGACCA
T
BS12856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12721-RA | 519 | CG12721-PA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12721-RA | 811 | CG12721-RA | 88..607 | 16..535 | 2600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12072212..12072731 | 535..16 | 2600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:10:15 has no hits.
BS12856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:34 Download gff for
BS12856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-RA | 1..519 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:39 Download gff for
BS12856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-RA | 85..609 | 16..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:24 Download gff for
BS12856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-RA | 89..607 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:34 Download gff for
BS12856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-RA | 85..609 | 16..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:25 Download gff for
BS12856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12721-RA | 89..607 | 17..535 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:25 Download gff for
BS12856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12072212..12072730 | 17..535 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:24 Download gff for
BS12856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11966245..11966763 | 17..535 | 100 | | Minus |
BS12856.pep Sequence
Translation from 16 to 534
> BS12856.pep
MAKILPTDGIWIPESCSFPEDVMIDMMEGLFRDVPNLTHKEYLALADLQS
RWMAKLANRQPESNPLPPKPKKRKKIAPKKQDQPVEEKGSEVDIYDVDDN
EMVNNRIYIPRLRSAWRARYFNIMMRAFVIKRGLLNKHINWQILDKIMAA
PDAEGQAELQAFVDKVVAGQEM*
BS12856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12721-PA | 172 | CG12721-PA | 1..172 | 1..172 | 904 | 100 | Plus |