Clone BS12856 Report

Search the DGRC for BS12856

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG12721-RA
Protein status:BS12856.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12856.5prime Sequence

549 bp (549 high quality bases) assembled on 2006-10-13

> BS12856.5prime
GAAGTTATCAGTCGACATGGCCAAGATATTGCCCACCGATGGCATCTGGA
TACCGGAGTCGTGCAGCTTTCCGGAGGATGTGATGATCGATATGATGGAG
GGACTATTCCGCGATGTGCCAAACCTAACGCACAAGGAGTACCTGGCGCT
GGCCGACCTGCAATCTAGATGGATGGCGAAGCTGGCCAACCGACAGCCGG
AATCGAATCCCCTGCCGCCAAAGCCAAAGAAGCGTAAGAAAATCGCTCCA
AAGAAGCAGGACCAGCCTGTCGAGGAGAAGGGCAGCGAAGTCGACATCTA
CGATGTGGACGACAACGAGATGGTCAACAATCGCATCTACATTCCGCGAC
TGCGTTCCGCTTGGAGAGCTCGCTATTTCAACATTATGATGCGCGCCTTT
GTCATCAAACGGGGACTATTGAATAAGCACATTAACTGGCAGATTCTCGA
CAAGATCATGGCAGCCCCCGACGCAGAGGGACAAGCCGAGCTTCAGGCGT
TTGTTGACAAAGTGGTCGCAGGCCAGGAAATGTAGAAGCTTTCTAGACC

BS12856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12721-PA 519 CG12721-RA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12721-RA 811 CG12721-RA 88..607 16..535 2600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12072212..12072731 535..16 2600 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:40:22 has no hits.

BS12856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:17 Download gff for BS12856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12721-PA 1..519 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:08 Download gff for BS12856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 88..612 16..541 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:51 Download gff for BS12856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 88..612 16..541 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:51 Download gff for BS12856.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12072207..12072731 16..541 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:08 Download gff for BS12856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11966240..11966764 16..541 99   Minus

BS12856.3prime Sequence

549 bp (549 high quality bases) assembled on 2006-10-13

> BS12856.3prime
ATGGTCTAGAAAGCTTCTACATTTCCTGGCCTGCGACCACTTTGTCAACA
AACGCCTGAAGCTCGGCTTGTCCCTCTGCGTCGGGGGCTGCCATGATCTT
GTCGAGAATCTGCCAGTTAATGTGCTTATTCAATAGTCCCCGTTTGATGA
CAAAGGCGCGCATCATAATGTTGAAATAGCGAGCTCTCCAAGCGGAACGC
AGTCGCGGAATGTAGATGCGATTGTTGACCATCTCGTTGTCGTCCACATC
GTAGATGTCGACTTCGCTGCCCTTCTCCTCGACAGGCTGGTCCTGCTTCT
TTGGAGCGATTTTCTTACGCTTCTTTGGCTTTGGCGGCAGGGGATTCGAT
TCCGGCTGTCGGTTGGCCAGCTTCGCCATCCATCTAGATTGCAGGTCGGC
CAGCGCCAGGTACTCCTTGTGCGTTAGGTTTGGCACATCGCGGAATAGTC
CCTCCATCATATCGATCATCACATCCTCCGGAAAGCTGCACGACTCCGGT
ATCCAGATGCCATCGGTGGGCAATATCTTGGCCATGTCGACTGATAACT

BS12856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12721-PA 519 CG12721-RA 1..519 535..17 2595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12721-RA 811 CG12721-RA 88..607 536..17 2600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12072212..12072731 17..536 2600 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:43:59 has no hits.

BS12856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:17 Download gff for BS12856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12721-PA 1..519 17..535 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:43 Download gff for BS12856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 88..612 11..536 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:13 Download gff for BS12856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 88..612 11..536 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:13 Download gff for BS12856.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12072207..12072731 11..536 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:43 Download gff for BS12856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11966240..11966764 11..536 99   Plus

BS12856.complete Sequence

551 bp assembled on 2006-11-01

GenBank Submission: FJ637315

> BS12856.complete
GAAGTTATCAGTCGACATGGCCAAGATATTGCCCACCGATGGCATCTGGA
TACCGGAGTCGTGCAGCTTTCCGGAGGATGTGATGATCGATATGATGGAG
GGACTATTCCGCGATGTGCCAAACCTAACGCACAAGGAGTACCTGGCGCT
GGCCGACCTGCAATCTAGATGGATGGCGAAGCTGGCCAACCGACAGCCGG
AATCGAATCCCCTGCCGCCAAAGCCAAAGAAGCGTAAGAAAATCGCTCCA
AAGAAGCAGGACCAGCCTGTCGAGGAGAAGGGCAGCGAAGTCGACATCTA
CGATGTGGACGACAACGAGATGGTCAACAATCGCATCTACATTCCGCGAC
TGCGTTCCGCTTGGAGAGCTCGCTATTTCAACATTATGATGCGCGCCTTT
GTCATCAAACGGGGACTATTGAATAAGCACATTAACTGGCAGATTCTCGA
CAAGATCATGGCAGCCCCCGACGCAGAGGGACAAGCCGAGCTTCAGGCGT
TTGTTGACAAAGTGGTCGCAGGCCAGGAAATGTAGAAGCTTTCTAGACCA
T

BS12856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12721-RA 519 CG12721-PA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12721-RA 811 CG12721-RA 88..607 16..535 2600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12072212..12072731 535..16 2600 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:10:15 has no hits.

BS12856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:34 Download gff for BS12856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 1..519 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:39 Download gff for BS12856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 85..609 16..541 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:24 Download gff for BS12856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 89..607 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:34 Download gff for BS12856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 85..609 16..541 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:25 Download gff for BS12856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 89..607 17..535 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:25 Download gff for BS12856.complete
Subject Subject Range Query Range Percent Splice Strand
X 12072212..12072730 17..535 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:24 Download gff for BS12856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11966245..11966763 17..535 100   Minus

BS12856.pep Sequence

Translation from 16 to 534

> BS12856.pep
MAKILPTDGIWIPESCSFPEDVMIDMMEGLFRDVPNLTHKEYLALADLQS
RWMAKLANRQPESNPLPPKPKKRKKIAPKKQDQPVEEKGSEVDIYDVDDN
EMVNNRIYIPRLRSAWRARYFNIMMRAFVIKRGLLNKHINWQILDKIMAA
PDAEGQAELQAFVDKVVAGQEM*

BS12856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12721-PA 172 CG12721-PA 1..172 1..172 904 100 Plus