Clone Sequence Records
BS12858.complete Sequence
3311 bp assembled on 2009-12-07
GenBank Submission: KX806161
> BS12858.complete
GAAGTTATCAGTCGACATGGATGGCAAGCGCAAGTTTAATGGAACCTCCA
ATGGACATGCCAAGAAGCCCAGGAATCCTGATGACGATGAGGAAATGGGC
TTTGAGGCGGAGCTGGCCGCCTTCGAGAACTCCGAGGACATGGACCAGAC
TCTGCTAATGGGCGATGGACCCGAGAACCAAACGACCAGTGAGCGTTGGT
CCCGTCCGCCGCCCCCAGAACTAGATCCCTCCAAGCACAACTTGGAGTTT
CAGCAGCTGGACGTGGAAAACTATTTGGGACAGCCGTTGCCGGGAATGCC
AGGTGCCCAAATAGGACCCGTGCCGGTGGTCCGAATGTTTGGTGTCACCA
TGGAGGGTAACTCTGTGTGCTGCCATGTGCATGGTTTCTGTCCATACTTC
TACATAGAGGCGCCCAGTCAATTCGAGGAGCACCATTGCGAGAAACTACA
AAAAGCCTTGGATCAAAAGGTTATTGCCGATATTCGCAACAACAAAGATA
ATGTCCAGGAGGCTGTGCTTATGGTGGAACTGGTGGAGAAGCTGAACATC
CATGGATACAATGGAGACAAGAAGCAGAGGTACATCAAAATATCGGTTAC
GCTGCCCAGATTTGTGGCTGCGGCTTCACGTCTCCTCAAAAAGGAAGTGA
TCATGTCGGAGATTGACTTCCAGGACTGTCGCGCCTTTGAGAATAACATA
GACTTTGACATTCGCTTCATGGTGGACACTGATGTGGTAGGTTGCAATTG
GATAGAGCTTCCCATGGGTCACTGGCGAATAAGGAACAGTCACAGCAAGC
CGTTGCCTGAATCCCGCTGCCAGATTGAAGTAGACGTGGCCTTCGACAGA
TTTATATCCCACGAGCCCGAAGGTGAATGGTCCAAGGTGGCTCCCTTCCG
GATCCTCTCCTTTGATATTGAATGCGCTGGTCGCAAAGGAATATTTCCGG
AAGCCAAAATAGATCCAGTCATCCAGATAGCCAATATGGTGATAAGGCAG
GGAGAACGAGAACCTTTCATTAGGAATGTCTTTACCCTAAATGAATGCGC
TCCAATCATAGGCAGCCAGGTGTTGTGCCACGACAAGGAGACCCAGATGC
TGGACAAGTGGTCTGCCTTTGTCCGGGAAGTTGACCCGGATATTTTGACC
GGATATAATATCAACAACTTTGACTTCCCCTATTTGCTTAACCGAGCAGC
TCACTTGAAGGTCAGGAACTTTGAGTATTTGGGCAGGATTAAGAACATTC
GTTCGGTGATCAAGGAACAGATGTTGCAGTCGAAGCAGATGGGTCGCAGG
GAAAACCAGTACGTTAATTTTGAGGGTAGAGTTCCCTTCGATCTCCTCTT
TGTCCTGCTGCGCGACTACAAACTACGCTCGTACACTCTCAACGCTGTGA
GCTATCACTTTCTGCAGGAGCAAAAGGAGGATGTGCATCATAGCATTATC
ACAGATCTTCAGAATGGAGACGAGCAGACACGTCGACGTTTGGCCATGTA
CTGCCTAAAGGATGCCTACTTACCGCTTAGATTGCTGGAAAAGTTAATGG
CCATTGTTAACTACATGGAGATGGCCAGGGTGACGGGTGTGCCACTGGAG
TCCTTGCTCACCCGCGGACAACAGATAAAGGTTTTAAGTCAATTGCTGCG
CAAGGCCAAAACCAAGGGATTCATCATGCCCTCGTACACCTCTCAGGGAT
CGGATGAACAGTATGAAGGAGCGACTGTGATTGAACCAAAACGTGGCTAC
TATGCGGACCCCATCTCCACGCTGGATTTCGCCTCCCTGTATCCAAGTAT
AATGATGGCGCATAATTTGTGCTACACCACCTTGGTTTTGGGTGGAACTC
GTGAGAAGCTGCGGCAGCAGGAGAACCTGCAGGACGATCAAGTGGAACGT
ACGCCTGCAAACAACTACTTTGTGAAGTCTGAGGTGCGTCGTGGTCTGCT
CCCTGAGATTCTGGAATCTCTTTTGGCGGCCAGAAAGCGTGCCAAAAATG
ACCTAAAAGTGGAAACAGATCCGTTTAAAAGAAAGGTCCTGGATGGCAGA
CAGCTGGCGCTGAAGATTTCGGCTAATTCCGTGTACGGATTTACTGGCGC
ACAGGTTGGAAAGTTGCCATGCTTAGAGATCTCGGGCAGCGTCACCGCCT
ACGGTCGTACCATGATCGAGATGACGAAAAACGAAGTGGAATCCCATTAC
ACACAGGCCAATGGCTACGAGAACAATGCAGTGGTCATCTACGGCGACAC
TGATTCTGTGATGGTTAATTTCGGAGTAAAAACTCTGGAGCGCAGCATGG
AGCTGGGACGCGAGGCTGCCGAACTGGTCAGTTCCAAGTTCGTGCATCCT
ATTAAATTGGAATTCGAGAAAGTTTACTATCCTTACCTGCTGATTAACAA
GAAACGCTATGCGGGATTATACTTTACGCGCCCAGATACCTACGATAAAA
TGGATTGCAAGGGCATAGAAACCGTGAGGAGAGATAACTCTCCGCTGGTG
GCCAACCTGATGAACTCCTGCCTGCAGAAACTACTCATCGAAAGGGATCC
CGATGGTGCAGTTGCCTATGTGAAACAGGTGATAGCCGATCTCCTCTGCA
ATCGCATCGACATCTCGCACTTGGTCATAACCAAGGAGTTGGCCAAAACG
GATTACGCAGCCAAACAGGCACACGTTGAGCTGGCCGCCAAGATGAAGAA
AAGAGATCCCGGTACGGCGCCCAAACTGGGGGATCGAGTTCCCTATGTGA
TCTGTGCGGCAGCCAAAAACACACCCGCTTACCAGAAGGCCGAGGATCCG
CTGTATGTGCTGGAAAACAGCGTGCCCATCGATGCCACTTACTACCTGGA
ACAGCAGCTGTCTAAGCCGCTGCTAAGGATCTTTGAACCTATTTTGGGCG
ACAATGCCGAGTCAATTTTGTTAAAAGGAGAACACACGCGCACACGAACT
GTGGTAACATCCAAAGTGGGTGGACTTGCTGGATTTATGACCAAGAAAAC
GTCGTGTTTGGGCTGTAAATCCCTGATGCCCAAGGGCTACGAACAGGCCT
GTCTGTGTCCACACTGCGAGCCACGAATGAGTGAGCTGTATCAGAAGGAG
GTGGGTGCGAAGAGGGAACTGGAGGAGACCTTCTCTCGCCTATGGACCGA
GTGCCAGCGATGCCAGGAATCCTTGCACGAGGAGGTCATCTGCTCCAACA
GAGATTGTCCCATCTTCTACATGCGACAGAAGGTTCGCATGGATCTGGAC
AATCAGGAGAAGCGGGTGTTGCGATTCGGCCTGGCCGAGTGGTAAAAGCT
TTCTAGACCAT
BS12858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-delta-RA | 3279 | CG5949-PA | 1..3279 | 17..3295 | 16395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-delta-RA | 3440 | CG5949-RA | 98..3376 | 17..3295 | 16395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15984386..15987611 | 3295..70 | 16130 | 100 | Minus |
| 3L | 28110227 | 3L | 15987662..15987718 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:58:51 has no hits.
BS12858.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:55 Download gff for
BS12858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-delta-RA | 94..3370 | 17..3293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:47 Download gff for
BS12858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-delta-RA | 98..3374 | 17..3293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:10 Download gff for
BS12858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-delta-RA | 94..3370 | 17..3293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:13 Download gff for
BS12858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-delta-RA | 98..3374 | 17..3293 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:13 Download gff for
BS12858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15984388..15987608 | 73..3293 | 100 | <- | Minus |
| 3L | 15987663..15987718 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:47 Download gff for
BS12858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15977488..15980708 | 73..3293 | 100 | <- | Minus |
| arm_3L | 15980763..15980818 | 17..72 | 100 | | Minus |
BS12858.3prime Sequence
790 bp (713 high quality bases) assembled on 2006-10-13
> BS12858.3prime
ATGGTCTAGAAAGCTTTTACCACTCGGCCAGGCCGAATCGCAACACCCGC
TTCTCCTGATTGTCCAGATCCATGCGAACCTTCTGTCGCATGTAGAAGAT
GGGACAATCTCTGTTGGAGCAGATGACCTCCTCGTGCAAGGATTCCTGGC
ATCGCTGGCACTCGGTCCATAGGCGAGAGAAGGTCTCCTCCAGTTCCCTC
TTCGCACCCACCTCCTTCTGATACAGCTCACTCATTCGTGGCTCGCAGTG
TGGACACAGACAGGCCTGTTCGTAGCCCTTGGGCATCAGGGATTTACAGC
CCAAACACGACGTTTTCTTGGTCATAAATCCAGCAAGTCCACCCACTTTG
GATGTTACCACAGTTCGTGTGCGCGTGTGTTCTCCTTTTAACAAAATTGA
CTCGGCATTGTCGCCCAAAATAGGTTCAAAGATCCTTAGCAGCGGCTTAG
ACAGCTGCTGTTCCAGGTAGTAAGTGGCATCGATGGGCACGCTGTTTTCC
AGCACATACAGCGGATCCTCGGCCTTCTGGTAAGCGGGTGTGTTTTTGGC
TGCCGCACAGATCACATAGGGAACTCGATCCCCCAGTTTGGGCGCCGTAC
CGGGATCTCTTTTCTTCATCTTGGCGGCCAGCTCAACGTGTGCCTGTTTG
GCTGCGTAATCCGTTTTGGCCAACTCCTTGGTTATGACCAAGTGCGAGAT
GTCGATGCGATTGCAGAGGAGATCGGCTATCACCTGTTTCACATAGGCAA
CTGCACCATCGGGATCCCTTTCGATGAGTAGTTTCTGCAG
BS12858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5949-PA | 3279 | DNApol-delta-RA | 2506..3279 | 790..17 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-delta-RA | 3440 | CG5949-RA | 2603..3376 | 790..17 | 3870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15984386..15985159 | 17..790 | 3870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:48:48 has no hits.
BS12858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:18 Download gff for
BS12858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5949-PA | 2506..3279 | 17..790 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:36:04 Download gff for
BS12858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-delta-RA | 2603..3381 | 10..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:05 Download gff for
BS12858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-delta-RA | 2603..3381 | 10..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:05 Download gff for
BS12858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15984381..15985159 | 10..790 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:36:04 Download gff for
BS12858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15977481..15978259 | 10..790 | 99 | | Plus |
BS12858.5prime Sequence
866 bp (778 high quality bases) assembled on 2006-10-13
> BS12858.5prime
GAAGTTATCAGTCGACATGGATGGCAAGCGCAAGTTTAATGGAACCTCCA
ATGGACATGCCAAGAAGCCCAGGAATCCTGATGACGATGAGGAAATGGGC
TTTGAGGCGGAGCTGGCCGCCTTCGAGAACTCCGAGGACATGGACCAGAC
TCTGCTAATGGGCGATGGACCCGAGAACCAAACGACCAGTGAGCGTTGGT
CCCGTCCGCCGCCCCCAGAACTAGATCCCTCCAAGCACAACTTGGAGTTT
CAGCAGCTGGACGTGGAAAACTATTTGGGACAGCCGTTGCCGGGAATGCC
AGGTGCCCAAATAGGACCCGTGCCGGTGGTCCGAATGTTTGGTGTCACCA
TGGAGGGTAACTCTGTGTGCTGCCATGTGCATGGTTTCTGTCCATACTTC
TACATAGAGGCGCCCAGTCAATTCGAGGAGCACCATTGCGAGAAACTACA
AAAAGCCTTGGATCAAAAGGTTATTGCCGATATTCGCAACAACAAAGATA
ATGTCCAGGAGGCTGTGCTTATGGTGGAACTGGTGGAGAAGCTGAACATC
CATGGATACAATGGAGACAAGAAGCAGAGGTACATCAAAATATCGGTTAC
GCTGCCCAGATTTGTGGCTGCGGCTTCACGTCTCCTCAAAAAGGAAGTGA
TCATGTCGGAGATTGACTTCCAGGACTGTCGCGCCTTTGAGAATAACATA
GACTTTGACATTCGCTTCATGGTGGACACTGATGTGGTAGGTTGCAATTG
GATAGAGCTTCCCATGGGTCACTGGCGAATAANGAACAGTCACAGCAAGC
CGTTGCCTGAATCCCGCTGCCAGATTGAAGTAGACGTGGCCTTCGACAGA
TTATATCCCACGAGCC
BS12858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5949-PA | 3279 | DNApol-delta-RA | 1..851 | 17..866 | 4196 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-delta-RA | 3440 | CG5949-RA | 98..948 | 17..866 | 4219 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15986814..15987611 | 866..70 | 3929 | 99.7 | Minus |
| 3L | 28110227 | 3L | 15987662..15987718 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:55:47 has no hits.
BS12858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:18 Download gff for
BS12858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5949-PA | 1..851 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:59:58 Download gff for
BS12858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-delta-RA | 94..948 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:33:40 Download gff for
BS12858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-delta-RA | 94..948 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:33:40 Download gff for
BS12858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15986814..15987608 | 73..866 | 99 | <- | Minus |
| 3L | 15987663..15987722 | 9..72 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:59:58 Download gff for
BS12858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15979914..15980708 | 73..866 | 99 | <- | Minus |
| arm_3L | 15980763..15980822 | 9..72 | 93 | | Minus |
BS12858.pep Sequence
Translation from 16 to 3294
> BS12858.pep
MDGKRKFNGTSNGHAKKPRNPDDDEEMGFEAELAAFENSEDMDQTLLMGD
GPENQTTSERWSRPPPPELDPSKHNLEFQQLDVENYLGQPLPGMPGAQIG
PVPVVRMFGVTMEGNSVCCHVHGFCPYFYIEAPSQFEEHHCEKLQKALDQ
KVIADIRNNKDNVQEAVLMVELVEKLNIHGYNGDKKQRYIKISVTLPRFV
AAASRLLKKEVIMSEIDFQDCRAFENNIDFDIRFMVDTDVVGCNWIELPM
GHWRIRNSHSKPLPESRCQIEVDVAFDRFISHEPEGEWSKVAPFRILSFD
IECAGRKGIFPEAKIDPVIQIANMVIRQGEREPFIRNVFTLNECAPIIGS
QVLCHDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVR
NFEYLGRIKNIRSVIKEQMLQSKQMGRRENQYVNFEGRVPFDLLFVLLRD
YKLRSYTLNAVSYHFLQEQKEDVHHSIITDLQNGDEQTRRRLAMYCLKDA
YLPLRLLEKLMAIVNYMEMARVTGVPLESLLTRGQQIKVLSQLLRKAKTK
GFIMPSYTSQGSDEQYEGATVIEPKRGYYADPISTLDFASLYPSIMMAHN
LCYTTLVLGGTREKLRQQENLQDDQVERTPANNYFVKSEVRRGLLPEILE
SLLAARKRAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKL
PCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIYGDTDSVMV
NFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAG
LYFTRPDTYDKMDCKGIETVRRDNSPLVANLMNSCLQKLLIERDPDGAVA
YVKQVIADLLCNRIDISHLVITKELAKTDYAAKQAHVELAAKMKKRDPGT
APKLGDRVPYVICAAAKNTPAYQKAEDPLYVLENSVPIDATYYLEQQLSK
PLLRIFEPILGDNAESILLKGEHTRTRTVVTSKVGGLAGFMTKKTSCLGC
KSLMPKGYEQACLCPHCEPRMSELYQKEVGAKRELEETFSRLWTECQRCQ
ESLHEEVICSNRDCPIFYMRQKVRMDLDNQEKRVLRFGLAEW*
BS12858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-delta-PA | 1092 | CG5949-PA | 1..1092 | 1..1092 | 5726 | 100 | Plus |
| mus205-PA | 2130 | CG1925-PA | 1377..2120 | 358..1081 | 721 | 29.8 | Plus |
| DNApol-alpha180-PA | 1488 | CG6349-PA | 380..1247 | 105..967 | 488 | 24 | Plus |
| mus205-PA | 2130 | CG1925-PA | 22..199 | 86..259 | 206 | 30.4 | Plus |
