Clone BS12863 Report

Search the DGRC for BS12863

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:63
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)34Fc-RA
Protein status:BS12863.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12863.3prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS12863.3prime
ATGGTCTAGAAAGCTTCTACTCCACATCGATGTCTTTTGTGACGCGACCC
ACCCAGTAAACGAATCCGGTCTGCACCACGGTGGCCATGAACTTGACGTT
GCCCTTGTAGCCTGCTGGCGGAATCCAGTCGAAGGTGATGCCGGTCAGCG
GCTTGCCCTTTTGCGCACTCAGATGGGTGATGGTGTCGTCCTTGCCGGAG
CAGTCCAAGGTCTGCGAGTGCACGGAGTCCACCACCTGGAACTGGCCGAC
GACGCGGTTCTGGCCATCGCGTGCCTGGATCATGAAGCCAAGGAACTCAT
CGCCGCCCAGCGTCAGGGTCAGCTTTTGATCCGAGCGCACATGGGAGGGT
CCGGAGATGCTGTACGGCGGCTTGGTCACCTGCAGCTTGGCTCCGTGCTG
GGGCGTCAGGTCACGACAGGCGGCCTTTGGAGCACCATCGGAGTAGGCGT
GGACACTGATGGCCAGGCAGGCCGCAAGAACCAACAAACGGAACATGTCG
ACTGATAACT

BS12863.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7532-PA 480 CG7532-RA 1..480 496..17 2400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fc-RA 656 CG7532-RA 54..538 501..17 2410 99.8 Minus
l(2)34Fc-RB 733 CG7532-RB 42..521 496..17 2400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14349232..14349645 17..430 2070 100 Plus
2L 23513712 2L 14349708..14349780 424..496 365 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:17:05 has no hits.

BS12863.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:21 Download gff for BS12863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7532-PA 1..480 17..496 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:12 Download gff for BS12863.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fc-RA 46..547 5..510 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:23 Download gff for BS12863.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fc-RA 46..547 5..510 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:23 Download gff for BS12863.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14349219..14349639 5..424 98 <- Plus
2L 14349709..14349785 425..504 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:12 Download gff for BS12863.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14349219..14349639 5..424 98 <- Plus
arm_2L 14349709..14349785 425..504 95   Plus

BS12863.5prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS12863.5prime
GAAGTTATCAGTCGACATGTTCCGTTTGTTGGTTCTTGCGGCCTGCCTGG
CCATCAGTGTCCACGCCTACTCCGATGGTGCTCCAAAGGCCGCCTGTCGT
GACCTGACGCCCCAGCACGGAGCCAAGCTGCAGGTGACCAAGCCGCCGTA
CAGCATCTCCGGACCCTCCCATGTGCGCTCGGATCAAAAGCTGACCCTGA
CGCTGGGCGGCGATGAGTTCCTTGGCTTCATGATCCAGGCACGCGATGGC
CAGAACCGCGTCGTCGGCCAGTTCCAGGTGGTGGACTCCGTGCACTCGCA
GACCTTGGACTGCTCCGGCAAGGACGACACCATCACCCATCTGAGTGCGC
AAAAGGGCAAGCCGCTGACCGGCATCACCTTCGACTGGATTCCGCCAGCA
GGCTACAAGGGCAACGTCAAGTTCATGGCCACCGTGGTGCAGACCGGATT
CGTTTACTGGGTGGGTCGCGTCACAAAAGACATCGATGTGGAGTAGAAGC
TTTCTAGACC

BS12863.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7532-PA 480 CG7532-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fc-RA 656 CG7532-RA 54..538 12..496 2410 99.8 Plus
l(2)34Fc-RB 733 CG7532-RB 42..521 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14349232..14349645 496..83 2070 100 Minus
2L 23513712 2L 14349708..14349780 89..17 365 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:00:31 has no hits.

BS12863.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:21 Download gff for BS12863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7532-PA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:33 Download gff for BS12863.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fc-RA 47..547 5..508 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:18 Download gff for BS12863.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fc-RA 47..547 5..508 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:18 Download gff for BS12863.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14349219..14349639 89..508 98 <- Minus
2L 14349709..14349785 9..88 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:33 Download gff for BS12863.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14349219..14349639 89..508 98 <- Minus
arm_2L 14349709..14349785 9..88 95   Minus

BS12863.complete Sequence

512 bp assembled on 2006-11-01

GenBank Submission: FJ637316

> BS12863.complete
GAAGTTATCAGTCGACATGTTCCGTTTGTTGGTTCTTGCGGCCTGCCTGG
CCATCAGTGTCCACGCCTACTCCGATGGTGCTCCAAAGGCCGCCTGTCGT
GACCTGACGCCCCAGCACGGAGCCAAGCTGCAGGTGACCAAGCCGCCGTA
CAGCATCTCCGGACCCTCCCATGTGCGCTCGGATCAAAAGCTGACCCTGA
CGCTGGGCGGCGATGAGTTCCTTGGCTTCATGATCCAGGCACGCGATGGC
CAGAACCGCGTCGTCGGCCAGTTCCAGGTGGTGGACTCCGTGCACTCGCA
GACCTTGGACTGCTCCGGCAAGGACGACACCATCACCCATCTGAGTGCGC
AAAAGGGCAAGCCGCTGACCGGCATCACCTTCGACTGGATTCCGCCAGCA
GGCTACAAGGGCAACGTCAAGTTCATGGCCACCGTGGTGCAGACCGGATT
CGTTTACTGGGTGGGTCGCGTCACAAAAGACATCGATGTGGAGTAGAAGC
TTTCTAGACCAT

BS12863.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fc-RB 480 CG7532-PB 1..480 17..496 2400 100 Plus
l(2)34Fc-RA 480 CG7532-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fc-RA 656 CG7532-RA 54..538 12..496 2410 99.8 Plus
l(2)34Fc-RB 733 CG7532-RB 42..521 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14349232..14349645 496..83 2070 100 Minus
2L 23513712 2L 14349708..14349780 89..17 365 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:40:19 has no hits.

BS12863.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:24 Download gff for BS12863.complete
Subject Subject Range Query Range Percent Splice Strand
CG7532-RA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:13 Download gff for BS12863.complete
Subject Subject Range Query Range Percent Splice Strand
CG7532-RA 44..544 5..508 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:56 Download gff for BS12863.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fc-RA 64..538 22..496 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:24 Download gff for BS12863.complete
Subject Subject Range Query Range Percent Splice Strand
CG7532-RA 44..544 5..508 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:55 Download gff for BS12863.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fc-RA 64..538 22..496 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:55 Download gff for BS12863.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14349232..14349639 89..496 100 <- Minus
2L 14349709..14349775 22..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:56 Download gff for BS12863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14349232..14349639 89..496 100 <- Minus
arm_2L 14349709..14349775 22..88 100   Minus

BS12863.pep Sequence

Translation from 16 to 495

> BS12863.pep
MFRLLVLAACLAISVHAYSDGAPKAACRDLTPQHGAKLQVTKPPYSISGP
SHVRSDQKLTLTLGGDEFLGFMIQARDGQNRVVGQFQVVDSVHSQTLDCS
GKDDTITHLSAQKGKPLTGITFDWIPPAGYKGNVKFMATVVQTGFVYWVG
RVTKDIDVE*

BS12863.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fc-PB 159 CG7532-PB 1..159 1..159 836 100 Plus
l(2)34Fc-PA 159 CG7532-PA 1..159 1..159 836 100 Plus