Clone Sequence Records
BS12864.3prime Sequence
528 bp (528 high quality bases) assembled on 2006-10-13
> BS12864.3prime
ATGGTCTAGAAAGCTTCTAGCGACGGTACGGCTGCTTGTTGTAACGACCG
CGCTCGTTCTCCTCGGACAGGTTGGCGTATTCACTATAGACCACGCACCA
GCAATAGGTCATAATCGCGCAGACAATTAGGCCGAAGATCAGCCAGAGGA
CTCCCGTCAGCACGTAGCCGTCGATGAAGAAGACGATGCCCGTGTAGATG
ACGGAGATCAGCAGACCGATGGCAATCATAATGCCGAGGACCACCCATGG
AACCATCAGGTAGTGGTTCCGCTTCAGGGCACCAATGATCATGAGCAGCG
ATATCAAGATCGTCATGCACAAATTGATGACTAGAATTATCTTAACAATG
TCATTGGGGATGAAGTCAAAGATTATCGTCTTGAAGTGCACCCGCGTCGT
GAAGATCACCACGATGGTGATGATCGACAGGACTATCGCCAGTATGCCCG
AGATAACGGAGCCATTCCGGGTCGATTGGCACAGACAGCACGAATTTAAC
AGTGGCTTCGGCATGTCGACTGATAACT
BS12864.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-PA | 498 | CG10311-RA | 1..498 | 514..17 | 2490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-RB | 1086 | CG10311-RB | 245..744 | 514..15 | 2500 | 100 | Minus |
CG10311-RA | 966 | CG10311-RA | 245..744 | 514..15 | 2500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16352089..16352331 | 272..514 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 16351878..16352033 | 118..273 | 780 | 100 | Plus |
3R | 32079331 | 3R | 16351128..16351231 | 15..118 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:14:42 has no hits.
BS12864.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:22 Download gff for
BS12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-PA | 1..498 | 17..514 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:06 Download gff for
BS12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..751 | 6..514 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:28 Download gff for
BS12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..751 | 6..514 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:28 Download gff for
BS12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16351121..16351230 | 6..117 | 96 | <- | Plus |
3R | 16351878..16352031 | 118..271 | 100 | <- | Plus |
3R | 16352089..16352331 | 272..514 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:06 Download gff for
BS12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12176843..12176952 | 6..117 | 96 | <- | Plus |
arm_3R | 12177600..12177753 | 118..271 | 100 | <- | Plus |
arm_3R | 12177811..12178053 | 272..514 | 100 | | Plus |
BS12864.5prime Sequence
528 bp (528 high quality bases) assembled on 2006-10-13
> BS12864.5prime
GAAGTTATCAGTCGACATGCCGAAGCCACTGTTAAATTCGTGCTGTCTGT
GCCAATCGACCCGGAATGGCTCCGTTATCTCGGGCATACTGGCGATAGTC
CTGTCGATCATCACCATCGTGGTGATCTTCACGACGCGGGTGCACTTCAA
GACGATAATCTTTGACTTCATCCCCAATGACATTGTTAAGATAATTCTAG
TCATCAATTTGTGCATGACGATCTTGATATCGCTGCTCATGATCATTGGT
GCCCTGAAGCGGAACCACTACCTGATGGTTCCATGGGTGGTCCTCGGCAT
TATGATTGCCATCGGTCTGCTGATCTCCGTCATCTACACGGGCATCGTCT
TCTTCATCGACGGCTACGTGCTGACGGGAGTCCTCTGGCTGATCTTCGGC
CTAATTGTCTGCGCGATTATGACCTATTGCTGGTGCGTGGTCTATAGTGA
ATACGCCAACCTGTCCGAGGAGAACGAGCGCGGTCGTTACAACAAGCAGC
CGTACCGTCGCTAGAAGCTTTCTAGACC
BS12864.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-PA | 498 | CG10311-RA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-RB | 1086 | CG10311-RB | 245..744 | 17..516 | 2500 | 100 | Plus |
CG10311-RA | 966 | CG10311-RA | 245..744 | 17..516 | 2500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16352089..16352331 | 259..17 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 16351878..16352033 | 413..258 | 780 | 100 | Minus |
3R | 32079331 | 3R | 16351128..16351231 | 516..413 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:39:49 has no hits.
BS12864.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:22 Download gff for
BS12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-PA | 1..498 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:03 Download gff for
BS12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..751 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:15 Download gff for
BS12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..751 | 17..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:15 Download gff for
BS12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16351121..16351230 | 414..525 | 96 | <- | Minus |
3R | 16351878..16352031 | 260..413 | 100 | <- | Minus |
3R | 16352089..16352331 | 17..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:03 Download gff for
BS12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12176843..12176952 | 414..525 | 96 | <- | Minus |
arm_3R | 12177600..12177753 | 260..413 | 100 | <- | Minus |
arm_3R | 12177811..12178053 | 17..259 | 100 | | Minus |
BS12864.complete Sequence
530 bp assembled on 2006-11-01
GenBank Submission: FJ637317
> BS12864.complete
GAAGTTATCAGTCGACATGCCGAAGCCACTGTTAAATTCGTGCTGTCTGT
GCCAATCGACCCGGAATGGCTCCGTTATCTCGGGCATACTGGCGATAGTC
CTGTCGATCATCACCATCGTGGTGATCTTCACGACGCGGGTGCACTTCAA
GACGATAATCTTTGACTTCATCCCCAATGACATTGTTAAGATAATTCTAG
TCATCAATTTGTGCATGACGATCTTGATATCGCTGCTCATGATCATTGGT
GCCCTGAAGCGGAACCACTACCTGATGGTTCCATGGGTGGTCCTCGGCAT
TATGATTGCCATCGGTCTGCTGATCTCCGTCATCTACACGGGCATCGTCT
TCTTCATCGACGGCTACGTGCTGACGGGAGTCCTCTGGCTGATCTTCGGC
CTAATTGTCTGCGCGATTATGACCTATTGCTGGTGCGTGGTCTATAGTGA
ATACGCCAACCTGTCCGAGGAGAACGAGCGCGGTCGTTACAACAAGCAGC
CGTACCGTCGCTAGAAGCTTTCTAGACCAT
BS12864.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-RB | 498 | CG10311-PB | 1..498 | 17..514 | 2490 | 100 | Plus |
CG10311-RA | 498 | CG10311-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-RB | 1086 | CG10311-RB | 245..744 | 17..516 | 2500 | 100 | Plus |
CG10311-RA | 966 | CG10311-RA | 245..744 | 17..516 | 2500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16352089..16352331 | 259..17 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 16351878..16352033 | 413..258 | 780 | 100 | Minus |
3R | 32079331 | 3R | 16351128..16351231 | 516..413 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:26:15 has no hits.
BS12864.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:00 Download gff for
BS12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 1..498 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:01 Download gff for
BS12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 241..747 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:58 Download gff for
BS12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..742 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:01 Download gff for
BS12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 241..747 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:24 Download gff for
BS12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..742 | 17..514 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:24 Download gff for
BS12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16351130..16351230 | 414..514 | 100 | <- | Minus |
3R | 16351878..16352031 | 260..413 | 100 | <- | Minus |
3R | 16352089..16352331 | 17..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:58 Download gff for
BS12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12176852..12176952 | 414..514 | 100 | <- | Minus |
arm_3R | 12177600..12177753 | 260..413 | 100 | <- | Minus |
arm_3R | 12177811..12178053 | 17..259 | 100 | | Minus |
BS12864.pep Sequence
Translation from 16 to 513
> BS12864.pep
MPKPLLNSCCLCQSTRNGSVISGILAIVLSIITIVVIFTTRVHFKTIIFD
FIPNDIVKIILVINLCMTILISLLMIIGALKRNHYLMVPWVVLGIMIAIG
LLISVIYTGIVFFIDGYVLTGVLWLIFGLIVCAIMTYCWCVVYSEYANLS
EENERGRYNKQPYRR*
BS12864.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-PB | 165 | CG10311-PB | 1..165 | 1..165 | 852 | 100 | Plus |
CG10311-PA | 165 | CG10311-PA | 1..165 | 1..165 | 852 | 100 | Plus |