Clone BS12864 Report

Search the DGRC for BS12864

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG10311-RA
Protein status:BS12864.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12864.3prime Sequence

528 bp (528 high quality bases) assembled on 2006-10-13

> BS12864.3prime
ATGGTCTAGAAAGCTTCTAGCGACGGTACGGCTGCTTGTTGTAACGACCG
CGCTCGTTCTCCTCGGACAGGTTGGCGTATTCACTATAGACCACGCACCA
GCAATAGGTCATAATCGCGCAGACAATTAGGCCGAAGATCAGCCAGAGGA
CTCCCGTCAGCACGTAGCCGTCGATGAAGAAGACGATGCCCGTGTAGATG
ACGGAGATCAGCAGACCGATGGCAATCATAATGCCGAGGACCACCCATGG
AACCATCAGGTAGTGGTTCCGCTTCAGGGCACCAATGATCATGAGCAGCG
ATATCAAGATCGTCATGCACAAATTGATGACTAGAATTATCTTAACAATG
TCATTGGGGATGAAGTCAAAGATTATCGTCTTGAAGTGCACCCGCGTCGT
GAAGATCACCACGATGGTGATGATCGACAGGACTATCGCCAGTATGCCCG
AGATAACGGAGCCATTCCGGGTCGATTGGCACAGACAGCACGAATTTAAC
AGTGGCTTCGGCATGTCGACTGATAACT

BS12864.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-PA 498 CG10311-RA 1..498 514..17 2490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-RB 1086 CG10311-RB 245..744 514..15 2500 100 Minus
CG10311-RA 966 CG10311-RA 245..744 514..15 2500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16352089..16352331 272..514 1215 100 Plus
3R 32079331 3R 16351878..16352033 118..273 780 100 Plus
3R 32079331 3R 16351128..16351231 15..118 520 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:14:42 has no hits.

BS12864.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:22 Download gff for BS12864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-PA 1..498 17..514 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:06 Download gff for BS12864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..751 6..514 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:28 Download gff for BS12864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..751 6..514 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:28 Download gff for BS12864.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16351121..16351230 6..117 96 <- Plus
3R 16351878..16352031 118..271 100 <- Plus
3R 16352089..16352331 272..514 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:06 Download gff for BS12864.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12176843..12176952 6..117 96 <- Plus
arm_3R 12177600..12177753 118..271 100 <- Plus
arm_3R 12177811..12178053 272..514 100   Plus

BS12864.5prime Sequence

528 bp (528 high quality bases) assembled on 2006-10-13

> BS12864.5prime
GAAGTTATCAGTCGACATGCCGAAGCCACTGTTAAATTCGTGCTGTCTGT
GCCAATCGACCCGGAATGGCTCCGTTATCTCGGGCATACTGGCGATAGTC
CTGTCGATCATCACCATCGTGGTGATCTTCACGACGCGGGTGCACTTCAA
GACGATAATCTTTGACTTCATCCCCAATGACATTGTTAAGATAATTCTAG
TCATCAATTTGTGCATGACGATCTTGATATCGCTGCTCATGATCATTGGT
GCCCTGAAGCGGAACCACTACCTGATGGTTCCATGGGTGGTCCTCGGCAT
TATGATTGCCATCGGTCTGCTGATCTCCGTCATCTACACGGGCATCGTCT
TCTTCATCGACGGCTACGTGCTGACGGGAGTCCTCTGGCTGATCTTCGGC
CTAATTGTCTGCGCGATTATGACCTATTGCTGGTGCGTGGTCTATAGTGA
ATACGCCAACCTGTCCGAGGAGAACGAGCGCGGTCGTTACAACAAGCAGC
CGTACCGTCGCTAGAAGCTTTCTAGACC

BS12864.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-PA 498 CG10311-RA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-RB 1086 CG10311-RB 245..744 17..516 2500 100 Plus
CG10311-RA 966 CG10311-RA 245..744 17..516 2500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16352089..16352331 259..17 1215 100 Minus
3R 32079331 3R 16351878..16352033 413..258 780 100 Minus
3R 32079331 3R 16351128..16351231 516..413 520 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:39:49 has no hits.

BS12864.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:22 Download gff for BS12864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-PA 1..498 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:03 Download gff for BS12864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..751 17..525 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:15 Download gff for BS12864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..751 17..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:15 Download gff for BS12864.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16351121..16351230 414..525 96 <- Minus
3R 16351878..16352031 260..413 100 <- Minus
3R 16352089..16352331 17..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:03 Download gff for BS12864.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12176843..12176952 414..525 96 <- Minus
arm_3R 12177600..12177753 260..413 100 <- Minus
arm_3R 12177811..12178053 17..259 100   Minus

BS12864.complete Sequence

530 bp assembled on 2006-11-01

GenBank Submission: FJ637317

> BS12864.complete
GAAGTTATCAGTCGACATGCCGAAGCCACTGTTAAATTCGTGCTGTCTGT
GCCAATCGACCCGGAATGGCTCCGTTATCTCGGGCATACTGGCGATAGTC
CTGTCGATCATCACCATCGTGGTGATCTTCACGACGCGGGTGCACTTCAA
GACGATAATCTTTGACTTCATCCCCAATGACATTGTTAAGATAATTCTAG
TCATCAATTTGTGCATGACGATCTTGATATCGCTGCTCATGATCATTGGT
GCCCTGAAGCGGAACCACTACCTGATGGTTCCATGGGTGGTCCTCGGCAT
TATGATTGCCATCGGTCTGCTGATCTCCGTCATCTACACGGGCATCGTCT
TCTTCATCGACGGCTACGTGCTGACGGGAGTCCTCTGGCTGATCTTCGGC
CTAATTGTCTGCGCGATTATGACCTATTGCTGGTGCGTGGTCTATAGTGA
ATACGCCAACCTGTCCGAGGAGAACGAGCGCGGTCGTTACAACAAGCAGC
CGTACCGTCGCTAGAAGCTTTCTAGACCAT

BS12864.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-RB 498 CG10311-PB 1..498 17..514 2490 100 Plus
CG10311-RA 498 CG10311-PA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-RB 1086 CG10311-RB 245..744 17..516 2500 100 Plus
CG10311-RA 966 CG10311-RA 245..744 17..516 2500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16352089..16352331 259..17 1215 100 Minus
3R 32079331 3R 16351878..16352033 413..258 780 100 Minus
3R 32079331 3R 16351128..16351231 516..413 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:26:15 has no hits.

BS12864.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:00 Download gff for BS12864.complete
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 1..498 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:01 Download gff for BS12864.complete
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 241..747 17..525 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:58 Download gff for BS12864.complete
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..742 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:01 Download gff for BS12864.complete
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 241..747 17..525 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:24 Download gff for BS12864.complete
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..742 17..514 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:24 Download gff for BS12864.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16351130..16351230 414..514 100 <- Minus
3R 16351878..16352031 260..413 100 <- Minus
3R 16352089..16352331 17..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:58 Download gff for BS12864.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12176852..12176952 414..514 100 <- Minus
arm_3R 12177600..12177753 260..413 100 <- Minus
arm_3R 12177811..12178053 17..259 100   Minus

BS12864.pep Sequence

Translation from 16 to 513

> BS12864.pep
MPKPLLNSCCLCQSTRNGSVISGILAIVLSIITIVVIFTTRVHFKTIIFD
FIPNDIVKIILVINLCMTILISLLMIIGALKRNHYLMVPWVVLGIMIAIG
LLISVIYTGIVFFIDGYVLTGVLWLIFGLIVCAIMTYCWCVVYSEYANLS
EENERGRYNKQPYRR*

BS12864.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-PB 165 CG10311-PB 1..165 1..165 852 100 Plus
CG10311-PA 165 CG10311-PA 1..165 1..165 852 100 Plus