Clone Sequence Records
BS12865.complete Sequence
1712 bp assembled on 2009-12-07
GenBank Submission: KX802829
> BS12865.complete
GAAGTTATCAGTCGACATGGCCGCTGAAAGGCAGGAGAAACGAGGCGAGG
AGGAGACGCAGCCCAGGTTGCCCGACCTCGGCTTTGTGCGCGACAAGCTT
CAGAAGTTCCAGTCCAAGATGCTGACCGACTTCGAGCAGCGGCTGTCCTG
CATGGTAGAGGATGTGCTGCAGGATCTGCGACAGCGCGAGTTGCGTGCCC
ACGAGTTCCCCAACTTCGAGAGATCCGATCGGAAGAGCACCTGGCACAAT
CGCGTGACCAGTCAAGCGCCAGCAGACGTCAGCGACTCCACAAATGGCCA
TGCAAATGGCACGCATCCAAGGCCACCGATCCAAAGCGAAACATCCGCTC
GTAAGCAGCGACGACAACTGCCCGAAAAAGTGTTCGTTGCCCGGGAATCG
TACCTCACCGCTCTGCTGCAGGTGGAGCACATGCGCACCATCTACCACAT
CTTTTATATTATTCTGGTCATGTTCCTGCTGAACGTGATCTGCTACGATT
ACTTTGTTGATGGCCGCTTCGATCTGGGACTTGGCACCTTCCGCGGCGGA
CTGCGCCGCCTCCACTGGGTGATGGGCGTTTGGCTGCTGGAGCATGTCTT
CGTCCTGGCGCTCTATTTCGCCTTCCGCGGATGGGCCTTGGTCAGGCACA
AACTGAAACCGCACAGTTCTCTCCAGCGCTTTTGGTCGCACAGCTGTCTC
ATCCTGTACATCAGCTCCCAGCTGGTCTTCTGTTTCGTGTCGACTTCGCT
GTGCCTCAAGTTCAACCTGCCCTTTGTGAGTGCGTGTATCCTGTTGCTCG
AGAGCACGCGACTGCTGATGAAGATGCACGCCTTTGTGAGGTACAATGCT
GAGCGCGTTCTGAATGGCAAGGCCAAGAAGGAAGATGCGGAGGAGGAGAA
AGAAGGCAGTGAGCGACCGTTTGTGCCGCCGCTGAGCTGTTACACGTACT
TTTTGTTTGCACCCACGCTTATCTACCGAGACAGCTACCCGCGCACCTCC
CACATCCGCTGGAAGTTTGCCCTGAATCGACTGTTGGAGGTGGTGGCCAT
AGCCTTCCTGTACGCGTTCATCCATGAGCGGCACATCCACGAGCACTTCG
GACAGTACGGACTGGAACCAATGGGACCCTCCCAGCTGATCCTCAAGCTG
TTCGGCATGATGCTGCCCAGCGCGGTGATCTTTCTGTGCGGCTTCTACCT
AATCCTGCACTCGTGGCTGAACTTCACGTCGGAGCTGCTACGCTTCGGTG
ATCGAATGTTCTACAAGGACTGGTGGACGTCGCACACTTACGATGGCTAC
TACAGAAACTGGAATGTCGTCGTGCACGACTGGCTGTACGAGTACGTGTA
CAAGGATATGTACACTCATGTGTTCCGAGGTTCCAAGGTGGCCGCCTCGC
TGGCAGTGTTCATGATCTCCGCTGTGGTCCATGAGCAGGTTCTCGGCTTT
GCCCTGCAAATGTTCTTCCCAGTGATGTTCTTCTTCTTTGGGGTCGTGGG
TGTTGCCTTGGTATTCCTAATGCGGAGTGCTCCAAAAGTGATGGGCAACA
TCTTTCTGTGGTTCTCTCTGATCCTGGGAAATGCCACGCTGATCTCACTA
TACGCCATGGAGCATTACGCCCTAAAGAACTGCAACCTAAGCAACGAGAG
TTGGACGTATCGCCTGCTGCCGGCGGTATGGCGCTGCTACAATTAGAAGC
TTTCTAGACCAT
BS12865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-RB | 1680 | CG8112-PB | 1..1680 | 17..1696 | 8385 | 99.9 | Plus |
| CG8112-RD | 669 | CG8112-PD | 1..651 | 17..667 | 3255 | 100 | Plus |
| CG8112-RC | 657 | CG8112-PC | 1..650 | 17..666 | 3250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-RB | 1956 | CG8112-RB | 187..1869 | 14..1696 | 8400 | 99.9 | Plus |
| CG8112-RD | 2129 | CG8112-RD | 1011..2042 | 665..1696 | 5145 | 99.9 | Plus |
| Cks85A-RC | 2904 | CG9790-RC | 634..1664 | 1696..666 | 5140 | 99.9 | Minus |
| CG8112-RD | 2129 | CG8112-RD | 187..840 | 14..667 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8714146..8715176 | 666..1696 | 5140 | 99.9 | Plus |
| 3R | 32079331 | 3R | 8713119..8713772 | 14..667 | 3270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:43:28 has no hits.
BS12865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:30 Download gff for
BS12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RA | 1..1680 | 17..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:50 Download gff for
BS12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RA | 326..2005 | 17..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:54 Download gff for
BS12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 190..1869 | 17..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:05 Download gff for
BS12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RA | 326..2005 | 17..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:20 Download gff for
BS12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 190..1869 | 17..1696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:20 Download gff for
BS12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8713122..8713770 | 17..665 | 100 | -> | Plus |
| 3R | 8714146..8715176 | 666..1696 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:54 Download gff for
BS12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4538844..4539492 | 17..665 | 100 | -> | Plus |
| arm_3R | 4539868..4540898 | 666..1696 | 99 | | Plus |
BS12865.3prime Sequence
915 bp (745 high quality bases) assembled on 2006-10-13
> BS12865.3prime
ATGGTCTAGAAAGCTTCTAATTGTAGCAGCGCCATACCGCCGGCAGCAGG
CGATACGTCCAACTCTCGTTGCTTAGGTTGCAGTTCTTTAGGGCGTAATG
CTCCATGGCGTATAGTGAGATCAGCGTGGCATTTCCCAGGATCAGAGAGA
ACCACAGAAAGATGTTGCCCATCACTTTTGGAGCACTCCGCATTAGGAAT
ACCAAGGCAACACCCACGACCCCAAAGAAGAAGAACATCACTGGGAAGAA
CATTTGCAGGGCAAAGCCGAGAACCTGCTCATGGACCACAGCGGAGATCA
TGAACACTGCCAGCGAGGCGGCCACCTTGGAACCTCGGAACACATGAGTG
TACATATCCTTGTACACGTACTCGTACAGCCAGTCGTGCACGACGACATT
CCAGTTTCTGTAGTAGCCATCGTAAGTGTGCGACGTCCACCAGTCCTTGT
AGAACATTCGATCACCGAAGCGTAGCAGCTCCGACGTGAAGTTCAGCCAC
GAGTGCAGGATTAGGTAGAAGCCGCACAGAAAGATCACCGCGCTGGGCAG
CATCATGCCGAACAGCTTGAGGATCAGCTGGGAGGGTCCCATTGGTTCCA
GTCCGTACTGTCCGAAGTGCTCGTGGATGTGCCGCTCATGGATGAACGCG
TACAGGAAGGCTATGGCCACCACCTCCAACAGTCGATTCAGGGCAAACTT
CCAGCGGATGTGGGAGGTGCGCGGGTAGCTGTCTCGGTAGATAAGCGTGG
GTGCAAACAAAAAGTACGTGTAACAGCTCAGCGGCGGCACAAACGGTCGC
TCACTGCCTTCTTTCTCCTCCTCCGCATCTTCCTTCTTGGCCTTGCCATT
CAGAACGCGCTCAGCATTGTACCTCACAAAGGCGTGCATCTTCATCAGCA
GTCGCGTGCTCTCGA
BS12865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-PA | 1680 | CG8112-RA | 782..1680 | 915..17 | 4470 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 2904 | CG9790-RC | 634..1532 | 17..915 | 4480 | 99.9 | Plus |
| CG8112-RB | 1956 | CG8112-RB | 971..1869 | 915..17 | 4480 | 99.9 | Minus |
| CG8112-RD | 2129 | CG8112-RD | 1144..2042 | 915..17 | 4480 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8714278..8715176 | 915..17 | 4480 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:19:30 has no hits.
BS12865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:22 Download gff for
BS12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-PA | 783..1680 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:50:30 Download gff for
BS12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RD | 1145..2042 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:43:11 Download gff for
BS12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RD | 1145..2042 | 17..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:43:11 Download gff for
BS12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8714279..8715176 | 17..914 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:50:30 Download gff for
BS12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4540001..4540898 | 17..914 | 99 | | Minus |
BS12865.5prime Sequence
863 bp (820 high quality bases) assembled on 2006-10-13
> BS12865.5prime
GAAGTTATCAGTCGACATGGCCGCTGAAAGGCAGGAGAAACGAGGCGAGG
AGGAGACGCAGCCCAGGTTGCCCGACCTCGGCTTTGTGCGCGACAAGCTT
CAGAAGTTCCAGTCCAAGATGCTGACCGACTTCGAGCAGCGGCTGTCCTG
CATGGTAGAGGATGTGCTGCAGGATCTGCGACAGCGCGAGTTGCGTGCCC
ACGAGTTCCCCAACTTCGAGAGATCCGATCGGAAGAGCACCTGGCACAAT
CGCGTGACCAGTCAAGCGCCAGCAGACGTCAGCGACTCCACAAATGGCCA
TGCAAATGGCACGCATCCAAGGCCACCGATCCAAAGCGAAACATCCGCTC
GTAAGCAGCGACGACAACTGCCCGAAAAAGTGTTCGTTGCCCGGGAATCG
TACCTCACCGCTCTGCTGCAGGTGGAGCACATGCGCACCATCTACCACAT
CTTTTATATTATTCTGGTCATGTTCCTGCTGAACGTGATCTGCTACGATT
ACTTTGTTGATGGCCGCTTCGATCTGGGACTTGGCACCTTCCGCGGCGGA
CTGCGCCGCCTCCACTGGGTGATGGGCGTTTGGCTGCTGGAGCATGTCTT
CGTCCTGGCGCTCTATTTCGCCTTCCGCGGATGGGCCTTGGTCAGGCACA
AACTGAAACCGCACAGTTCTCTCCAGCGCTTTTGGTCGCACAGCTGTCTC
ATCCTGTACATCAGCTCCCAGCTGGTCTTCTGTTTCGTGTCGACTTCGCT
GTGCCTCAAGTTCAACCTGCCCTTTGTGAGTGCGTGTATCCTGTTGCTCG
AGAGCACGCGACTGCTGATGAAGATGCACGCCTTTGTGAGGTACATGCTG
AGCGCGTTCTGAA
BS12865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-PA | 1680 | CG8112-RA | 1..848 | 17..863 | 4200 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-RB | 1956 | CG8112-RB | 187..1037 | 14..863 | 4230 | 99.9 | Plus |
| Cks85A-RC | 2904 | CG9790-RC | 2038..2691 | 667..14 | 3270 | 100 | Minus |
| CG8112-RD | 2129 | CG8112-RD | 187..840 | 14..667 | 3270 | 100 | Plus |
| Cks85A-RC | 2904 | CG9790-RC | 1466..1664 | 863..666 | 970 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8713119..8713772 | 14..667 | 3270 | 100 | Plus |
| 3R | 32079331 | 3R | 8714146..8714344 | 666..863 | 945 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:55:52 has no hits.
BS12865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:23 Download gff for
BS12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:00 Download gff for
BS12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 185..1037 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:04 Download gff for
BS12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 185..1037 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:04 Download gff for
BS12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8713117..8713770 | 9..665 | 99 | -> | Plus |
| 3R | 8714146..8714344 | 666..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:00 Download gff for
BS12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4538839..4539492 | 9..665 | 99 | -> | Plus |
| arm_3R | 4539868..4540066 | 666..863 | 99 | | Plus |
BS12865.pep Sequence
Translation from 16 to 1695
> BS12865.pep
MAAERQEKRGEEETQPRLPDLGFVRDKLQKFQSKMLTDFEQRLSCMVEDV
LQDLRQRELRAHEFPNFERSDRKSTWHNRVTSQAPADVSDSTNGHANGTH
PRPPIQSETSARKQRRQLPEKVFVARESYLTALLQVEHMRTIYHIFYIIL
VMFLLNVICYDYFVDGRFDLGLGTFRGGLRRLHWVMGVWLLEHVFVLALY
FAFRGWALVRHKLKPHSSLQRFWSHSCLILYISSQLVFCFVSTSLCLKFN
LPFVSACILLLESTRLLMKMHAFVRYNAERVLNGKAKKEDAEEEKEGSER
PFVPPLSCYTYFLFAPTLIYRDSYPRTSHIRWKFALNRLLEVVAIAFLYA
FIHERHIHEHFGQYGLEPMGPSQLILKLFGMMLPSAVIFLCGFYLILHSW
LNFTSELLRFGDRMFYKDWWTSHTYDGYYRNWNVVVHDWLYEYVYKDMYT
HVFRGSKVAASLAVFMISAVVHEQVLGFALQMFFPVMFFFFGVVGVALVF
LMRSAPKVMGNIFLWFSLILGNATLISLYAMEHYALKNCNLSNESWTYRL
LPAVWRCYN*
BS12865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-PB | 559 | CG8112-PB | 1..559 | 1..559 | 2986 | 100 | Plus |
| CG8112-PD | 222 | CG8112-PD | 1..220 | 1..220 | 1149 | 98.6 | Plus |
| CG8112-PC | 218 | CG8112-PC | 1..216 | 1..216 | 1144 | 100 | Plus |
| mdy-PE | 565 | CG31991-PE | 297..545 | 281..529 | 350 | 35.8 | Plus |
| mdy-PC | 565 | CG31991-PC | 297..545 | 281..529 | 350 | 35.8 | Plus |
