Clone BS12867 Report

Search the DGRC for BS12867

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG11777-RA
Protein status:BS12867.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12867.5prime Sequence

516 bp (516 high quality bases) assembled on 2006-10-13

> BS12867.5prime
GAAGTTATCAGTCGACATGTCTGTAACGCTGCACACCGACGTGGGTGACC
TCAAAATAGAGCTCTTCTGCGATGCCTGCCCCAAGGCCTGCGAAAATTTC
CTCGCCCTGTGTGCGAGCGACTATTACAGCGGCTGCGTCTTCATCCGAAA
CATCAAGGGATTTATTGTCCAAACTGGAGATCCTACGAACACCGGAAAGA
ATGGACAGTCCATTTGGGGCCAGAAGTTCGACGACGAATTCAAGGAGACC
ATTAAGCACACTGATCGAGGAATGGTTTCCATGGCCAACAACGGACCGAA
CGCCAATGCCAGCCAGTTCTTCATTACCTATGCCGCCCAGCCAAATCTTG
ACTTGAAGTACACGCTCTTTGGCCGTGTGATCGATGGATTCGATGCCCTG
GATGAACTGGAGAAACTGCCCGTCAATCCCAAGAACTATCGTCCCCATGT
GGACAAGAAGATCAATGGAGTAACTATACATGCCAATCCTTTGGCGACGT
GAAAGCTTTCTAGACC

BS12867.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-PA 486 CG11777-RA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-RA 701 CG11777-RA 19..504 17..502 2430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10469199..10469446 255..502 1240 100 Plus
2R 25286936 2R 10468700..10468937 19..256 1190 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:00:35 has no hits.

BS12867.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:24 Download gff for BS12867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-PA 1..486 17..502 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:57 Download gff for BS12867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..507 17..505 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:31 Download gff for BS12867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..507 17..505 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:31 Download gff for BS12867.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10468698..10468937 16..256 99 -> Plus
2R 10469201..10469449 257..505 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:57 Download gff for BS12867.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6356203..6356442 16..256 99 -> Plus
arm_2R 6356706..6356954 257..505 99   Plus

BS12867.3prime Sequence

516 bp (516 high quality bases) assembled on 2006-10-13

> BS12867.3prime
ATGGTCTAGAAAGCTTTCACGTCGCCAAAGGATTGGCATGTATAGTTACT
CCATTGATCTTCTTGTCCACATGGGGACGATAGTTCTTGGGATTGACGGG
CAGTTTCTCCAGTTCATCCAGGGCATCGAATCCATCGATCACACGGCCAA
AGAGCGTGTACTTCAAGTCAAGATTTGGCTGGGCGGCATAGGTAATGAAG
AACTGGCTGGCATTGGCGTTCGGTCCGTTGTTGGCCATGGAAACCATTCC
TCGATCAGTGTGCTTAATGGTCTCCTTGAATTCGTCGTCGAACTTCTGGC
CCCAAATGGACTGTCCATTCTTTCCGGTGTTCGTAGGATCTCCAGTTTGG
ACAATAAATCCCTTGATGTTTCGGATGAAGACGCAGCCGCTGTAATAGTC
GCTCGCACACAGGGCGAGGAAATTTTCGCAGGCCTTGGGGCAGGCATCGC
AGAAGAGCTCTATTTTGAGGTCACCCACGTCGGTGTGCAGCGTTACAGAC
ATGTCGACTGATAACT

BS12867.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-PA 486 CG11777-RA 1..486 502..17 2430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-RA 701 CG11777-RA 19..504 502..17 2430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10469199..10469446 264..17 1240 100 Minus
2R 25286936 2R 10468700..10468937 500..263 1190 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:51:50 has no hits.

BS12867.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:24 Download gff for BS12867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-PA 1..486 17..502 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:01 Download gff for BS12867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..507 14..502 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:57 Download gff for BS12867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..507 14..502 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:57 Download gff for BS12867.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10468698..10468937 263..503 99 -> Minus
2R 10469201..10469449 14..262 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:01 Download gff for BS12867.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6356203..6356442 263..503 99 -> Minus
arm_2R 6356706..6356954 14..262 99   Minus

BS12867.complete Sequence

518 bp assembled on 2006-11-01

GenBank Submission: FJ637318

> BS12867.complete
GAAGTTATCAGTCGACATGTCTGTAACGCTGCACACCGACGTGGGTGACC
TCAAAATAGAGCTCTTCTGCGATGCCTGCCCCAAGGCCTGCGAAAATTTC
CTCGCCCTGTGTGCGAGCGACTATTACAGCGGCTGCGTCTTCATCCGAAA
CATCAAGGGATTTATTGTCCAAACTGGAGATCCTACGAACACCGGAAAGA
ATGGACAGTCCATTTGGGGCCAGAAGTTCGACGACGAATTCAAGGAGACC
ATTAAGCACACTGATCGAGGAATGGTTTCCATGGCCAACAACGGACCGAA
CGCCAATGCCAGCCAGTTCTTCATTACCTATGCCGCCCAGCCAAATCTTG
ACTTGAAGTACACGCTCTTTGGCCGTGTGATCGATGGATTCGATGCCCTG
GATGAACTGGAGAAACTGCCCGTCAATCCCAAGAACTATCGTCCCCATGT
GGACAAGAAGATCAATGGAGTAACTATACATGCCAATCCTTTGGCGACGT
GAAAGCTTTCTAGACCAT

BS12867.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-RA 486 CG11777-PA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-RA 701 CG11777-RA 19..504 17..502 2430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10469199..10469446 255..502 1240 100 Plus
2R 25286936 2R 10468700..10468937 19..256 1190 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:51:50 has no hits.

BS12867.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:02 Download gff for BS12867.complete
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 1..486 17..502 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:02 Download gff for BS12867.complete
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 16..504 17..505 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:58 Download gff for BS12867.complete
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..503 17..501 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:02 Download gff for BS12867.complete
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 16..504 17..505 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:35 Download gff for BS12867.complete
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..503 17..501 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:35 Download gff for BS12867.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10469201..10469445 257..501 100   Plus
2R 10468699..10468937 17..256 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:58 Download gff for BS12867.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6356204..6356442 17..256 99 -> Plus
arm_2R 6356706..6356950 257..501 100   Plus

BS12867.pep Sequence

Translation from 16 to 501

> BS12867.pep
MSVTLHTDVGDLKIELFCDACPKACENFLALCASDYYSGCVFIRNIKGFI
VQTGDPTNTGKNGQSIWGQKFDDEFKETIKHTDRGMVSMANNGPNANASQ
FFITYAAQPNLDLKYTLFGRVIDGFDALDELEKLPVNPKNYRPHVDKKIN
GVTIHANPLAT*

BS12867.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-PA 161 CG11777-PA 1..161 1..161 868 100 Plus
CG7747-PA 517 CG7747-PA 282..438 3..160 438 50.6 Plus
CG3511-PB 637 CG3511-PB 483..634 2..155 365 49.4 Plus
CG3511-PA 637 CG3511-PA 483..634 2..155 365 49.4 Plus
Cypl-PA 176 CG13892-PA 23..162 3..143 319 44.7 Plus