Clone Sequence Records
BS12867.5prime Sequence
516 bp (516 high quality bases) assembled on 2006-10-13
> BS12867.5prime
GAAGTTATCAGTCGACATGTCTGTAACGCTGCACACCGACGTGGGTGACC
TCAAAATAGAGCTCTTCTGCGATGCCTGCCCCAAGGCCTGCGAAAATTTC
CTCGCCCTGTGTGCGAGCGACTATTACAGCGGCTGCGTCTTCATCCGAAA
CATCAAGGGATTTATTGTCCAAACTGGAGATCCTACGAACACCGGAAAGA
ATGGACAGTCCATTTGGGGCCAGAAGTTCGACGACGAATTCAAGGAGACC
ATTAAGCACACTGATCGAGGAATGGTTTCCATGGCCAACAACGGACCGAA
CGCCAATGCCAGCCAGTTCTTCATTACCTATGCCGCCCAGCCAAATCTTG
ACTTGAAGTACACGCTCTTTGGCCGTGTGATCGATGGATTCGATGCCCTG
GATGAACTGGAGAAACTGCCCGTCAATCCCAAGAACTATCGTCCCCATGT
GGACAAGAAGATCAATGGAGTAACTATACATGCCAATCCTTTGGCGACGT
GAAAGCTTTCTAGACC
BS12867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-PA | 486 | CG11777-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-RA | 701 | CG11777-RA | 19..504 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10469199..10469446 | 255..502 | 1240 | 100 | Plus |
2R | 25286936 | 2R | 10468700..10468937 | 19..256 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:00:35 has no hits.
BS12867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:24 Download gff for
BS12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-PA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:57 Download gff for
BS12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..507 | 17..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:31 Download gff for
BS12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..507 | 17..505 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:31 Download gff for
BS12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10468698..10468937 | 16..256 | 99 | -> | Plus |
2R | 10469201..10469449 | 257..505 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:57 Download gff for
BS12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6356203..6356442 | 16..256 | 99 | -> | Plus |
arm_2R | 6356706..6356954 | 257..505 | 99 | | Plus |
BS12867.3prime Sequence
516 bp (516 high quality bases) assembled on 2006-10-13
> BS12867.3prime
ATGGTCTAGAAAGCTTTCACGTCGCCAAAGGATTGGCATGTATAGTTACT
CCATTGATCTTCTTGTCCACATGGGGACGATAGTTCTTGGGATTGACGGG
CAGTTTCTCCAGTTCATCCAGGGCATCGAATCCATCGATCACACGGCCAA
AGAGCGTGTACTTCAAGTCAAGATTTGGCTGGGCGGCATAGGTAATGAAG
AACTGGCTGGCATTGGCGTTCGGTCCGTTGTTGGCCATGGAAACCATTCC
TCGATCAGTGTGCTTAATGGTCTCCTTGAATTCGTCGTCGAACTTCTGGC
CCCAAATGGACTGTCCATTCTTTCCGGTGTTCGTAGGATCTCCAGTTTGG
ACAATAAATCCCTTGATGTTTCGGATGAAGACGCAGCCGCTGTAATAGTC
GCTCGCACACAGGGCGAGGAAATTTTCGCAGGCCTTGGGGCAGGCATCGC
AGAAGAGCTCTATTTTGAGGTCACCCACGTCGGTGTGCAGCGTTACAGAC
ATGTCGACTGATAACT
BS12867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-PA | 486 | CG11777-RA | 1..486 | 502..17 | 2430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-RA | 701 | CG11777-RA | 19..504 | 502..17 | 2430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10469199..10469446 | 264..17 | 1240 | 100 | Minus |
2R | 25286936 | 2R | 10468700..10468937 | 500..263 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:51:50 has no hits.
BS12867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:24 Download gff for
BS12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-PA | 1..486 | 17..502 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:01 Download gff for
BS12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..507 | 14..502 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:57 Download gff for
BS12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..507 | 14..502 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:57 Download gff for
BS12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10468698..10468937 | 263..503 | 99 | -> | Minus |
2R | 10469201..10469449 | 14..262 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:01 Download gff for
BS12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6356203..6356442 | 263..503 | 99 | -> | Minus |
arm_2R | 6356706..6356954 | 14..262 | 99 | | Minus |
BS12867.complete Sequence
518 bp assembled on 2006-11-01
GenBank Submission: FJ637318
> BS12867.complete
GAAGTTATCAGTCGACATGTCTGTAACGCTGCACACCGACGTGGGTGACC
TCAAAATAGAGCTCTTCTGCGATGCCTGCCCCAAGGCCTGCGAAAATTTC
CTCGCCCTGTGTGCGAGCGACTATTACAGCGGCTGCGTCTTCATCCGAAA
CATCAAGGGATTTATTGTCCAAACTGGAGATCCTACGAACACCGGAAAGA
ATGGACAGTCCATTTGGGGCCAGAAGTTCGACGACGAATTCAAGGAGACC
ATTAAGCACACTGATCGAGGAATGGTTTCCATGGCCAACAACGGACCGAA
CGCCAATGCCAGCCAGTTCTTCATTACCTATGCCGCCCAGCCAAATCTTG
ACTTGAAGTACACGCTCTTTGGCCGTGTGATCGATGGATTCGATGCCCTG
GATGAACTGGAGAAACTGCCCGTCAATCCCAAGAACTATCGTCCCCATGT
GGACAAGAAGATCAATGGAGTAACTATACATGCCAATCCTTTGGCGACGT
GAAAGCTTTCTAGACCAT
BS12867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-RA | 486 | CG11777-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-RA | 701 | CG11777-RA | 19..504 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10469199..10469446 | 255..502 | 1240 | 100 | Plus |
2R | 25286936 | 2R | 10468700..10468937 | 19..256 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:51:50 has no hits.
BS12867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:02 Download gff for
BS12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:02 Download gff for
BS12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 16..504 | 17..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:58 Download gff for
BS12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..503 | 17..501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:02 Download gff for
BS12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 16..504 | 17..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:35 Download gff for
BS12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..503 | 17..501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:35 Download gff for
BS12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10469201..10469445 | 257..501 | 100 | | Plus |
2R | 10468699..10468937 | 17..256 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:58 Download gff for
BS12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6356204..6356442 | 17..256 | 99 | -> | Plus |
arm_2R | 6356706..6356950 | 257..501 | 100 | | Plus |
BS12867.pep Sequence
Translation from 16 to 501
> BS12867.pep
MSVTLHTDVGDLKIELFCDACPKACENFLALCASDYYSGCVFIRNIKGFI
VQTGDPTNTGKNGQSIWGQKFDDEFKETIKHTDRGMVSMANNGPNANASQ
FFITYAAQPNLDLKYTLFGRVIDGFDALDELEKLPVNPKNYRPHVDKKIN
GVTIHANPLAT*
BS12867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-PA | 161 | CG11777-PA | 1..161 | 1..161 | 868 | 100 | Plus |
CG7747-PA | 517 | CG7747-PA | 282..438 | 3..160 | 438 | 50.6 | Plus |
CG3511-PB | 637 | CG3511-PB | 483..634 | 2..155 | 365 | 49.4 | Plus |
CG3511-PA | 637 | CG3511-PA | 483..634 | 2..155 | 365 | 49.4 | Plus |
Cypl-PA | 176 | CG13892-PA | 23..162 | 3..143 | 319 | 44.7 | Plus |