Clone Sequence Records
BS12871.3prime Sequence
372 bp (372 high quality bases) assembled on 2006-10-13
> BS12871.3prime
ATGGTCTAGAAAGCTTTTATTTTCCCATGCGCTGAATGGACCACTCCTGC
TGGCACAACGGGCATCGGTTGTTCTGCTTGACCCACAGCGACATGCAGCA
GTGGTGAAAGGAGTGGTTGCACTCGCCCCAAACCACCACGCAGTCCTGGC
GACCCATCACATCCCGCTTGTTGTCCGCCTGGCAGCGAAGGCAGGAATCC
ATAACTTGAACACGGCAAATGGCACAGATATCGCATTCCACATCCCAACT
CCACATTGCAACTGCGTTCCATTTCTTCAGCGTAAACATTTTTTCCGGTT
TGCCGGCATCTCCGTCGTCTGTGGGCCTATCCACTGAGTTTTCTGGATCA
TCAGCCATGTCGACTGATAACT
BS12871.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8998-PA | 342 | Roc2-RA | 1..342 | 358..17 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 758 | CG8998-RB | 268..613 | 361..16 | 1730 | 100 | Minus |
| Roc2-RA | 584 | CG8998-RA | 172..517 | 361..16 | 1730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11652901..11653084 | 16..199 | 920 | 100 | Plus |
| 2R | 25286936 | 2R | 11678206..11678368 | 199..361 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:00:13 has no hits.
BS12871.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:26 Download gff for
BS12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8998-PA | 1..342 | 17..358 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:00 Download gff for
BS12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..522 | 8..361 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:29 Download gff for
BS12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..522 | 8..361 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:29 Download gff for
BS12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11652896..11653083 | 8..198 | 97 | <- | Plus |
| 2R | 11678206..11678368 | 199..361 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:00 Download gff for
BS12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7565711..7565873 | 199..361 | 100 | | Plus |
| arm_2R | 7540401..7540588 | 8..198 | 97 | <- | Plus |
BS12871.5prime Sequence
372 bp (372 high quality bases) assembled on 2006-10-13
> BS12871.5prime
GAAGTTATCAGTCGACATGGCTGATGATCCAGAAAACTCAGTGGATAGGC
CCACAGACGACGGAGATGCCGGCAAACCGGAAAAAATGTTTACGCTGAAG
AAATGGAACGCAGTTGCAATGTGGAGTTGGGATGTGGAATGCGATATCTG
TGCCATTTGCCGTGTTCAAGTTATGGATTCCTGCCTTCGCTGCCAGGCGG
ACAACAAGCGGGATGTGATGGGTCGCCAGGACTGCGTGGTGGTTTGGGGC
GAGTGCAACCACTCCTTTCACCACTGCTGCATGTCGCTGTGGGTCAAGCA
GAACAACCGATGCCCGTTGTGCCAGCAGGAGTGGTCCATTCAGCGCATGG
GAAAATAAAAGCTTTCTAGACC
BS12871.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8998-PA | 342 | Roc2-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 758 | CG8998-RB | 268..613 | 14..359 | 1730 | 100 | Plus |
| Roc2-RA | 584 | CG8998-RA | 172..517 | 14..359 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11652901..11653084 | 359..176 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 11678206..11678368 | 176..14 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:12:34 has no hits.
BS12871.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:26 Download gff for
BS12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8998-PA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:35 Download gff for
BS12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..522 | 14..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:31 Download gff for
BS12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..522 | 14..367 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:31 Download gff for
BS12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11652896..11653083 | 177..367 | 97 | <- | Minus |
| 2R | 11678206..11678368 | 14..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:35 Download gff for
BS12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7540401..7540588 | 177..367 | 97 | <- | Minus |
| arm_2R | 7565711..7565873 | 14..176 | 100 | | Minus |
BS12871.complete Sequence
374 bp assembled on 2006-11-01
GenBank Submission: FJ637319
> BS12871.complete
GAAGTTATCAGTCGACATGGCTGATGATCCAGAAAACTCAGTGGATAGGC
CCACAGACGACGGAGATGCCGGCAAACCGGAAAAAATGTTTACGCTGAAG
AAATGGAACGCAGTTGCAATGTGGAGTTGGGATGTGGAATGCGATATCTG
TGCCATTTGCCGTGTTCAAGTTATGGATTCCTGCCTTCGCTGCCAGGCGG
ACAACAAGCGGGATGTGATGGGTCGCCAGGACTGCGTGGTGGTTTGGGGC
GAGTGCAACCACTCCTTTCACCACTGCTGCATGTCGCTGTGGGTCAAGCA
GAACAACCGATGCCCGTTGTGCCAGCAGGAGTGGTCCATTCAGCGCATGG
GAAAATAAAAGCTTTCTAGACCAT
BS12871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 342 | CG8998-PB | 1..342 | 17..358 | 1710 | 100 | Plus |
| Roc2-RA | 342 | CG8998-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 758 | CG8998-RB | 268..613 | 14..359 | 1730 | 100 | Plus |
| Roc2-RA | 584 | CG8998-RA | 172..517 | 14..359 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11652901..11653084 | 359..176 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 11678206..11678368 | 176..14 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:21:08 has no hits.
BS12871.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:32 Download gff for
BS12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:00 Download gff for
BS12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 173..512 | 17..356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:40 Download gff for
BS12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 175..514 | 17..356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:33 Download gff for
BS12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 170..520 | 14..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:23 Download gff for
BS12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 175..514 | 17..356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:23 Download gff for
BS12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11652904..11653083 | 177..356 | 100 | <- | Minus |
| 2R | 11678206..11678365 | 17..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:40 Download gff for
BS12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7540409..7540588 | 177..356 | 100 | <- | Minus |
| arm_2R | 7565711..7565870 | 17..176 | 100 | | Minus |
BS12871.pep Sequence
Translation from 16 to 357
> BS12871.pep
MADDPENSVDRPTDDGDAGKPEKMFTLKKWNAVAMWSWDVECDICAICRV
QVMDSCLRCQADNKRDVMGRQDCVVVWGECNHSFHHCCMSLWVKQNNRCP
LCQQEWSIQRMGK*
BS12871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-PB | 113 | CG8998-PB | 1..113 | 1..113 | 658 | 100 | Plus |
| Roc2-PA | 113 | CG8998-PA | 1..113 | 1..113 | 658 | 100 | Plus |
| Roc1a-PD | 108 | CG16982-PD | 5..107 | 6..112 | 274 | 43.9 | Plus |
| Roc1a-PA | 108 | CG16982-PA | 5..107 | 6..112 | 274 | 43.9 | Plus |
| Roc1b-PA | 122 | CG16988-PA | 15..122 | 4..113 | 263 | 42.3 | Plus |
