Clone Sequence Records
BS12873.3prime Sequence
510 bp (510 high quality bases) assembled on 2006-10-13
> BS12873.3prime
ATGGTCTAGAAAGCTTTTAGGCAATGAATTCGTATGGAATCGGGGCCAGA
GCAATCGGTTCTTCAAGTTTCTTAACAAAGTGCGCCTTCTTCGGCTGTTC
CGGCTGGCGCTTCAGACTGACCCATTGTCCCTTTTCCTTCGCCTCCTTCA
GCAATCGCTCATTTTCCTTTACGCGGCGCAAAAAATCTTCGCGGCACTTG
GAGTGGTGGATGTGCTCAATGCGCACATTGACCCGCTTAGCAAGGATTTT
GCCTCTTACGCGTTTGTTTACTATTACACCAACGGCGTGCTGAGTCACAT
TGAATATGCGCCCGGTTTTGCCATGATATGCCTTATAGGGCAAACCCTTC
TGTACAGCACCATGTCCCTTAATGTCAACGATGTCGCCGATCTTGAAAAC
CCGCATGTATGTGGACAACGGAATAACTCCATGCTTTCGGAAGGGACGGG
AAAACATGTCCCGTGTGCCGCGACGATAGCCCTTTGAGTTGGTCATGTCG
ACTGATAACT
BS12873.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12775-PA | 480 | RpL21-RA | 1..480 | 496..17 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL21-RC | 656 | CG12775-RC | 97..577 | 496..16 | 2405 | 100 | Minus |
RpL21-RB | 662 | CG12775-RB | 68..548 | 496..16 | 2405 | 100 | Minus |
RpL21-RA | 614 | CG12775-RA | 55..535 | 496..16 | 2405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22247225..22247705 | 16..496 | 2405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:16:50 has no hits.
BS12873.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:27 Download gff for
BS12873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12775-PA | 1..480 | 17..496 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:28 Download gff for
BS12873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL21-RA | 55..544 | 7..496 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:38 Download gff for
BS12873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL21-RA | 55..544 | 7..496 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:38 Download gff for
BS12873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22247216..22247705 | 7..496 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:28 Download gff for
BS12873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22247216..22247705 | 7..496 | 99 | | Plus |
BS12873.5prime Sequence
510 bp (510 high quality bases) assembled on 2006-10-13
> BS12873.5prime
GAAGTTATCAGTCGACATGACCAACTCAAAGGGCTATCGTCGCGGCACAC
GGGACATGTTTTCCCGTCCCTTCCGAAAGCATGGAGTTATTCCGTTGTCC
ACATACATGCGGGTTTTCAAGATCGGCGACATCGTTGACATTAAGGGACA
TGGTGCTGTACAGAAGGGTTTGCCCTATAAGGCATATCATGGCAAAACCG
GGCGCATATTCAATGTGACTCAGCACGCCGTTGGTGTAATAGTAAACAAA
CGCGTAAGAGGCAAAATCCTTGCTAAGCGGGTCAATGTGCGCATTGAGCA
CATCCACCACTCCAAGTGCCGCGAAGATTTTTTGCGCCGCGTAAAGGAAA
ATGAGCGATTGCTGAAGGAGGCGAAGGAAAAGGGACAATGGGTCAGTCTG
AAGCGCCAGCCGGAACAGCCGAAGAAGGCGCACTTTGTTAAGAAACTTGA
AGAACCGATTGCTCTGGCCCCGATTCCATACGAATTCATTGCCTAAAAGC
TTTCTAGACC
BS12873.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12775-PA | 480 | RpL21-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL21-RC | 656 | CG12775-RC | 97..577 | 17..497 | 2405 | 100 | Plus |
RpL21-RB | 662 | CG12775-RB | 68..548 | 17..497 | 2405 | 100 | Plus |
RpL21-RA | 614 | CG12775-RA | 55..535 | 17..497 | 2405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22247225..22247705 | 497..17 | 2405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:00:45 has no hits.
BS12873.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:28 Download gff for
BS12873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12775-PA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:04 Download gff for
BS12873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL21-RA | 55..544 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:50 Download gff for
BS12873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL21-RA | 55..544 | 17..506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:50 Download gff for
BS12873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22247216..22247705 | 17..506 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:04 Download gff for
BS12873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22247216..22247705 | 17..506 | 99 | | Minus |
BS12873.complete Sequence
512 bp assembled on 2006-11-01
GenBank Submission: FJ637320
> BS12873.complete
GAAGTTATCAGTCGACATGACCAACTCAAAGGGCTATCGTCGCGGCACAC
GGGACATGTTTTCCCGTCCCTTCCGAAAGCATGGAGTTATTCCGTTGTCC
ACATACATGCGGGTTTTCAAGATCGGCGACATCGTTGACATTAAGGGACA
TGGTGCTGTACAGAAGGGTTTGCCCTATAAGGCATATCATGGCAAAACCG
GGCGCATATTCAATGTGACTCAGCACGCCGTTGGTGTAATAGTAAACAAA
CGCGTAAGAGGCAAAATCCTTGCTAAGCGGGTCAATGTGCGCATTGAGCA
CATCCACCACTCCAAGTGCCGCGAAGATTTTTTGCGCCGCGTAAAGGAAA
ATGAGCGATTGCTGAAGGAGGCGAAGGAAAAGGGACAATGGGTCAGTCTG
AAGCGCCAGCCGGAACAGCCGAAGAAGGCGCACTTTGTTAAGAAACTTGA
AGAACCGATTGCTCTGGCCCCGATTCCATACGAATTCATTGCCTAAAAGC
TTTCTAGACCAT
BS12873.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL21-RC | 480 | CG12775-PC | 1..480 | 17..496 | 2400 | 100 | Plus |
RpL21-RB | 480 | CG12775-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
RpL21-RA | 480 | CG12775-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL21-RC | 656 | CG12775-RC | 97..577 | 17..497 | 2405 | 100 | Plus |
RpL21-RB | 662 | CG12775-RB | 68..548 | 17..497 | 2405 | 100 | Plus |
RpL21-RA | 614 | CG12775-RA | 55..535 | 17..497 | 2405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22247225..22247705 | 497..17 | 2405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:40:34 has no hits.
BS12873.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:34 Download gff for
BS12873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL21-RA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:42 Download gff for
BS12873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL21-RA | 55..544 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:31 Download gff for
BS12873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL21-RA | 55..532 | 17..494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:35 Download gff for
BS12873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL21-RA | 55..544 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:37 Download gff for
BS12873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL21-RA | 55..532 | 17..494 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:37 Download gff for
BS12873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22247228..22247705 | 17..494 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:31 Download gff for
BS12873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22247228..22247705 | 17..494 | 100 | | Minus |
BS12873.pep Sequence
Translation from 16 to 495
> BS12873.pep
MTNSKGYRRGTRDMFSRPFRKHGVIPLSTYMRVFKIGDIVDIKGHGAVQK
GLPYKAYHGKTGRIFNVTQHAVGVIVNKRVRGKILAKRVNVRIEHIHHSK
CREDFLRRVKENERLLKEAKEKGQWVSLKRQPEQPKKAHFVKKLEEPIAL
APIPYEFIA*
BS12873.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL21-PC | 159 | CG12775-PC | 1..159 | 1..159 | 834 | 100 | Plus |
RpL21-PB | 159 | CG12775-PB | 1..159 | 1..159 | 834 | 100 | Plus |
RpL21-PA | 159 | CG12775-PA | 1..159 | 1..159 | 834 | 100 | Plus |