Clone BS12873 Report

Search the DGRC for BS12873

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptRpL21-RA
Protein status:BS12873.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12873.3prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS12873.3prime
ATGGTCTAGAAAGCTTTTAGGCAATGAATTCGTATGGAATCGGGGCCAGA
GCAATCGGTTCTTCAAGTTTCTTAACAAAGTGCGCCTTCTTCGGCTGTTC
CGGCTGGCGCTTCAGACTGACCCATTGTCCCTTTTCCTTCGCCTCCTTCA
GCAATCGCTCATTTTCCTTTACGCGGCGCAAAAAATCTTCGCGGCACTTG
GAGTGGTGGATGTGCTCAATGCGCACATTGACCCGCTTAGCAAGGATTTT
GCCTCTTACGCGTTTGTTTACTATTACACCAACGGCGTGCTGAGTCACAT
TGAATATGCGCCCGGTTTTGCCATGATATGCCTTATAGGGCAAACCCTTC
TGTACAGCACCATGTCCCTTAATGTCAACGATGTCGCCGATCTTGAAAAC
CCGCATGTATGTGGACAACGGAATAACTCCATGCTTTCGGAAGGGACGGG
AAAACATGTCCCGTGTGCCGCGACGATAGCCCTTTGAGTTGGTCATGTCG
ACTGATAACT

BS12873.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12775-PA 480 RpL21-RA 1..480 496..17 2400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpL21-RC 656 CG12775-RC 97..577 496..16 2405 100 Minus
RpL21-RB 662 CG12775-RB 68..548 496..16 2405 100 Minus
RpL21-RA 614 CG12775-RA 55..535 496..16 2405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22247225..22247705 16..496 2405 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:16:50 has no hits.

BS12873.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:27 Download gff for BS12873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12775-PA 1..480 17..496 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:28 Download gff for BS12873.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL21-RA 55..544 7..496 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:38 Download gff for BS12873.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL21-RA 55..544 7..496 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:38 Download gff for BS12873.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22247216..22247705 7..496 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:28 Download gff for BS12873.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22247216..22247705 7..496 99   Plus

BS12873.5prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS12873.5prime
GAAGTTATCAGTCGACATGACCAACTCAAAGGGCTATCGTCGCGGCACAC
GGGACATGTTTTCCCGTCCCTTCCGAAAGCATGGAGTTATTCCGTTGTCC
ACATACATGCGGGTTTTCAAGATCGGCGACATCGTTGACATTAAGGGACA
TGGTGCTGTACAGAAGGGTTTGCCCTATAAGGCATATCATGGCAAAACCG
GGCGCATATTCAATGTGACTCAGCACGCCGTTGGTGTAATAGTAAACAAA
CGCGTAAGAGGCAAAATCCTTGCTAAGCGGGTCAATGTGCGCATTGAGCA
CATCCACCACTCCAAGTGCCGCGAAGATTTTTTGCGCCGCGTAAAGGAAA
ATGAGCGATTGCTGAAGGAGGCGAAGGAAAAGGGACAATGGGTCAGTCTG
AAGCGCCAGCCGGAACAGCCGAAGAAGGCGCACTTTGTTAAGAAACTTGA
AGAACCGATTGCTCTGGCCCCGATTCCATACGAATTCATTGCCTAAAAGC
TTTCTAGACC

BS12873.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12775-PA 480 RpL21-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpL21-RC 656 CG12775-RC 97..577 17..497 2405 100 Plus
RpL21-RB 662 CG12775-RB 68..548 17..497 2405 100 Plus
RpL21-RA 614 CG12775-RA 55..535 17..497 2405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22247225..22247705 497..17 2405 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:00:45 has no hits.

BS12873.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:28 Download gff for BS12873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12775-PA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:04 Download gff for BS12873.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL21-RA 55..544 17..506 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:50 Download gff for BS12873.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL21-RA 55..544 17..506 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:50 Download gff for BS12873.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22247216..22247705 17..506 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:04 Download gff for BS12873.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22247216..22247705 17..506 99   Minus

BS12873.complete Sequence

512 bp assembled on 2006-11-01

GenBank Submission: FJ637320

> BS12873.complete
GAAGTTATCAGTCGACATGACCAACTCAAAGGGCTATCGTCGCGGCACAC
GGGACATGTTTTCCCGTCCCTTCCGAAAGCATGGAGTTATTCCGTTGTCC
ACATACATGCGGGTTTTCAAGATCGGCGACATCGTTGACATTAAGGGACA
TGGTGCTGTACAGAAGGGTTTGCCCTATAAGGCATATCATGGCAAAACCG
GGCGCATATTCAATGTGACTCAGCACGCCGTTGGTGTAATAGTAAACAAA
CGCGTAAGAGGCAAAATCCTTGCTAAGCGGGTCAATGTGCGCATTGAGCA
CATCCACCACTCCAAGTGCCGCGAAGATTTTTTGCGCCGCGTAAAGGAAA
ATGAGCGATTGCTGAAGGAGGCGAAGGAAAAGGGACAATGGGTCAGTCTG
AAGCGCCAGCCGGAACAGCCGAAGAAGGCGCACTTTGTTAAGAAACTTGA
AGAACCGATTGCTCTGGCCCCGATTCCATACGAATTCATTGCCTAAAAGC
TTTCTAGACCAT

BS12873.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpL21-RC 480 CG12775-PC 1..480 17..496 2400 100 Plus
RpL21-RB 480 CG12775-PB 1..480 17..496 2400 100 Plus
RpL21-RA 480 CG12775-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpL21-RC 656 CG12775-RC 97..577 17..497 2405 100 Plus
RpL21-RB 662 CG12775-RB 68..548 17..497 2405 100 Plus
RpL21-RA 614 CG12775-RA 55..535 17..497 2405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22247225..22247705 497..17 2405 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:40:34 has no hits.

BS12873.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:34 Download gff for BS12873.complete
Subject Subject Range Query Range Percent Splice Strand
RpL21-RA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:42 Download gff for BS12873.complete
Subject Subject Range Query Range Percent Splice Strand
RpL21-RA 55..544 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:31 Download gff for BS12873.complete
Subject Subject Range Query Range Percent Splice Strand
RpL21-RA 55..532 17..494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:35 Download gff for BS12873.complete
Subject Subject Range Query Range Percent Splice Strand
RpL21-RA 55..544 17..506 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:37 Download gff for BS12873.complete
Subject Subject Range Query Range Percent Splice Strand
RpL21-RA 55..532 17..494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:37 Download gff for BS12873.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22247228..22247705 17..494 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:31 Download gff for BS12873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22247228..22247705 17..494 100   Minus

BS12873.pep Sequence

Translation from 16 to 495

> BS12873.pep
MTNSKGYRRGTRDMFSRPFRKHGVIPLSTYMRVFKIGDIVDIKGHGAVQK
GLPYKAYHGKTGRIFNVTQHAVGVIVNKRVRGKILAKRVNVRIEHIHHSK
CREDFLRRVKENERLLKEAKEKGQWVSLKRQPEQPKKAHFVKKLEEPIAL
APIPYEFIA*

BS12873.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
RpL21-PC 159 CG12775-PC 1..159 1..159 834 100 Plus
RpL21-PB 159 CG12775-PB 1..159 1..159 834 100 Plus
RpL21-PA 159 CG12775-PA 1..159 1..159 834 100 Plus