Clone Sequence Records
BS12875.3prime Sequence
747 bp (697 high quality bases) assembled on 2006-10-13
> BS12875.3prime
ATGGTCTAGAAAGCTTTCAATTGTCCTCCACCACTAGTGATACAAACTGC
CTCGCGGTTTCCTTGAAGGCGAAAGCTATAACAACCAAAGTTAGAGCCCA
CCATCGAAGGTTCTTCCTAGTGGCTCCGACTGCCTGGTAGGCGAGGACCA
GGGAGCAGAGGTGATGTCCCATGACCAGAAGATGGTGCAAGTTCCGGCCA
AAAACGGTCGTGTTATTTCGCCACACCAAAATGGGCAGAAGGAAGAACTT
GGACAGGTTGGATATCAGCACCACTTTGAGTATAATTAAAGAAAAATTTC
GAAAGCCTATTTTCTGCATCCAATCAATACTCAGAGTGGCGGTGATTATT
AGCAGCAATAGAGTCATGAACATGTAATCTCCCATGTTTTGAAGGGTATA
TGTGTAAAAGCCCTTTTCGTGGACATGCAAAGAGGCATTCGGAGGGTCGG
GCAGTTTTTGGCGGCACAGCGCAAAGGATTCCAGGAGCAGCACCACCAGC
GAAACCTTCCAGTAGAGCTTAAAGTCGCCATTGTATATAATGTGCCGGAA
GGCGCACGAATCTAATAGCAGTGCATCTATTAATATGATAAACTCCTCGA
ACTCAATGTATTTATCCGTGATTTGGTGACAGTTGTCGCATTGCGTGGTT
TTCATAGTATTGCTGTATTTCTTGAACAGTTCTTTTACTCTGTGTCCACA
ATTAACGCACACAAATCGCTTCTTTTCGGACATGTCGACTGATAACT
BS12875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32442-PA | 717 | CG32442-RA | 1..717 | 733..17 | 3585 | 100 | Minus |
| CG32442-PB | 378 | CG32442-RB | 1..216 | 733..518 | 1080 | 100 | Minus |
| CG32442-PB | 378 | CG32442-RB | 223..378 | 519..364 | 780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32442-RA | 934 | CG32442-RA | 93..809 | 733..17 | 3585 | 100 | Minus |
| CG32442-RB | 942 | CG32442-RB | 93..817 | 733..17 | 3495 | 98.9 | Minus |
| CG32442-RC | 930 | CG32442-RC | 93..805 | 733..17 | 3465 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21528343..21528706 | 17..380 | 1820 | 100 | Plus |
| 3L | 28110227 | 3L | 21528770..21528910 | 379..519 | 705 | 100 | Plus |
| 3L | 28110227 | 3L | 21528966..21529085 | 518..637 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 21529145..21529241 | 637..733 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:45:12 has no hits.
BS12875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:28 Download gff for
BS12875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-PA | 1..717 | 17..733 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:49 Download gff for
BS12875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 93..811 | 11..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:29 Download gff for
BS12875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 93..811 | 11..733 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:29 Download gff for
BS12875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21528341..21528704 | 11..378 | 98 | <- | Plus |
| 3L | 21528770..21528908 | 379..517 | 100 | <- | Plus |
| 3L | 21528966..21529085 | 518..637 | 100 | <- | Plus |
| 3L | 21529146..21529241 | 638..733 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:49 Download gff for
BS12875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21521441..21521804 | 11..378 | 98 | <- | Plus |
| arm_3L | 21521870..21522008 | 379..517 | 100 | <- | Plus |
| arm_3L | 21522066..21522185 | 518..637 | 100 | <- | Plus |
| arm_3L | 21522246..21522341 | 638..733 | 100 | | Plus |
BS12875.5prime Sequence
716 bp (681 high quality bases) assembled on 2006-10-13
> BS12875.5prime
GAAGTTATCAGTCGACATGTCCGAAAAGAAGCGATTTGTGTGCGTTAATT
GTGGACACAGAGTAAAAGAACTGTTCAAGAAATACAGCAATACTATGAAA
ACCACGCAATGCGACAACTGTCACCAAATCACGGATAAATACATTGAGTT
CGAGGAGTTTATCATATTAATAGATGCACTGCTATTAGATTCGTGCGCCT
TCCGGCACATTATATACAATGGCGACTTTAAGCTCTACTGGAAGGTTTCG
CTGGTGGTGCTGCTCCTGGAATCCTTTGCGCTGTGCCGCCAAAAACTGCC
CGACCCTCCGAATGCCTCTTTGCATGTCCACGAAAAGGGCTTTTACACAT
ATACCCTTCAAAACATGGGAGATTACATGTTCATGACTCTATTGCTGCTA
ATAATCACCGCCACTCTGAGTATTGATTGGATGCAGAAAATAGGCTTTCG
AAATTTTTCTTTAATTATACTCAAAGTGGTGCTGATATCCAACCTGTCCA
AGTTCTTCCTTCTGCCCATTTTGGTGTGGCGAAATAACACGACCGTTTTT
GGCCGGAACTTGCACCATCTTCTGGTCATGGGACATCACCTCTGCTCCCT
GGTCCTCGCCTACCAGGCAGTCGGAGCCACTAGGAAGAACCTTCGATGGT
GGGCTCTAACTTTGGTTGTTATAGCTTTCGCCTTTCAGGAAACCGCGAGG
CAGTTTGTATCACTAG
BS12875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32442-PA | 717 | CG32442-RA | 1..700 | 17..716 | 3450 | 99.7 | Plus |
| CG32442-PB | 378 | CG32442-RB | 1..216 | 17..232 | 1080 | 100 | Plus |
| CG32442-PB | 378 | CG32442-RB | 223..378 | 231..386 | 780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32442-RA | 934 | CG32442-RA | 93..792 | 17..716 | 3470 | 99.7 | Plus |
| CG32442-RB | 942 | CG32442-RB | 93..800 | 17..716 | 3380 | 98.6 | Plus |
| CG32442-RC | 930 | CG32442-RC | 93..788 | 17..716 | 3350 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21528360..21528706 | 716..370 | 1705 | 99.4 | Minus |
| 3L | 28110227 | 3L | 21528770..21528910 | 371..231 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 21528966..21529085 | 232..113 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 21529145..21529241 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:09:24 has no hits.
BS12875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:28 Download gff for
BS12875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-PA | 1..700 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:15 Download gff for
BS12875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 93..792 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:58 Download gff for
BS12875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 93..792 | 17..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:58 Download gff for
BS12875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21528360..21528704 | 372..716 | 99 | <- | Minus |
| 3L | 21528770..21528908 | 233..371 | 100 | <- | Minus |
| 3L | 21528966..21529085 | 113..232 | 100 | <- | Minus |
| 3L | 21529146..21529241 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:15 Download gff for
BS12875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21521460..21521804 | 372..716 | 99 | <- | Minus |
| arm_3L | 21521870..21522008 | 233..371 | 100 | <- | Minus |
| arm_3L | 21522066..21522185 | 113..232 | 100 | <- | Minus |
| arm_3L | 21522246..21522341 | 17..112 | 100 | | Minus |
BS12875.complete Sequence
749 bp assembled on 2006-11-01
GenBank Submission: FJ637321
> BS12875.complete
GAAGTTATCAGTCGACATGTCCGAAAAGAAGCGATTTGTGTGCGTTAATT
GTGGACACAGAGTAAAAGAACTGTTCAAGAAATACAGCAATACTATGAAA
ACCACGCAATGCGACAACTGTCACCAAATCACGGATAAATACATTGAGTT
CGAGGAGTTTATCATATTAATAGATGCACTGCTATTAGATTCGTGCGCCT
TCCGGCACATTATATACAATGGCGACTTTAAGCTCTACTGGAAGGTTTCG
CTGGTGGTGCTGCTCCTGGAATCCTTTGCGCTGTGCCGCCAAAAACTGCC
CGACCCTCCGAATGCCTCTTTGCATGTCCACGAAAAGGGCTTTTACACAT
ATACCCTTCAAAACATGGGAGATTACATGTTCATGACTCTATTGCTGCTA
ATAATCACCGCCACTCTGAGTATTGATTGGATGCAGAAAATAGGCTTTCG
AAATTTTTCTTTAATTATACTCAAAGTGGTGCTGATATCCAACCTGTCCA
AGTTCTTCCTTCTGCCCATTTTGGTGTGGCGAAATAACACGACCGTTTTT
GGCCGGAACTTGCACCATCTTCTGGTCATGGGACATCACCTCTGCTCCCT
GGTCCTCGCCTACCAGGCAGTCGGAGCCACTAGGAAGAACCTTCGATGGT
GGGCTCTAACTTTGGTTGTTATAGCTTTCGCCTTCAAGGAAACCGCGAGG
CAGTTTGTATCACTAGTGGTGGAGGACAATTGAAAGCTTTCTAGACCAT
BS12875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32442-RA | 717 | CG32442-PA | 1..717 | 17..733 | 3585 | 100 | Plus |
| CG32442-RB | 378 | CG32442-PB | 1..378 | 17..386 | 1735 | 97.9 | Plus |
| CG32442-RC | 366 | CG32442-PC | 1..366 | 17..386 | 1680 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32442-RA | 934 | CG32442-RA | 93..809 | 17..733 | 3585 | 100 | Plus |
| CG32442-RB | 942 | CG32442-RB | 93..817 | 17..733 | 3470 | 98.9 | Plus |
| CG32442-RC | 930 | CG32442-RC | 93..805 | 17..733 | 3415 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21528343..21528706 | 733..370 | 1820 | 100 | Minus |
| 3L | 28110227 | 3L | 21528770..21528910 | 371..231 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 21528966..21529085 | 232..113 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 21529145..21529241 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:01:18 has no hits.
BS12875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:36 Download gff for
BS12875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:44 Download gff for
BS12875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 66..784 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:37 Download gff for
BS12875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 93..808 | 17..732 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:36 Download gff for
BS12875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 66..784 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:58 Download gff for
BS12875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 93..808 | 17..732 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:58 Download gff for
BS12875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21529146..21529241 | 17..112 | 100 | | Minus |
| 3L | 21528344..21528704 | 372..732 | 100 | <- | Minus |
| 3L | 21528770..21528908 | 233..371 | 100 | <- | Minus |
| 3L | 21528966..21529085 | 113..232 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:37 Download gff for
BS12875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21521444..21521804 | 372..732 | 100 | <- | Minus |
| arm_3L | 21521870..21522008 | 233..371 | 100 | <- | Minus |
| arm_3L | 21522066..21522185 | 113..232 | 100 | <- | Minus |
| arm_3L | 21522246..21522341 | 17..112 | 100 | | Minus |
BS12875.pep Sequence
Translation from 16 to 732
> BS12875.pep
MSEKKRFVCVNCGHRVKELFKKYSNTMKTTQCDNCHQITDKYIEFEEFII
LIDALLLDSCAFRHIIYNGDFKLYWKVSLVVLLLESFALCRQKLPDPPNA
SLHVHEKGFYTYTLQNMGDYMFMTLLLLIITATLSIDWMQKIGFRNFSLI
ILKVVLISNLSKFFLLPILVWRNNTTVFGRNLHHLLVMGHHLCSLVLAYQ
AVGATRKNLRWWALTLVVIAFAFKETARQFVSLVVEDN*
BS12875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32442-PA | 238 | CG32442-PA | 1..238 | 1..238 | 1251 | 100 | Plus |
| CG32442-PC | 121 | CG32442-PC | 1..73 | 1..73 | 393 | 98.6 | Plus |
| CG32442-PB | 125 | CG32442-PB | 1..73 | 1..73 | 393 | 98.6 | Plus |
