Clone Sequence Records
BS12876.complete Sequence
1421 bp assembled on 2009-12-07
GenBank Submission: KX802878
> BS12876.complete
GAAGTTATCAGTCGACATGAAGTTAGTATCGATTTGGGCATTGGCAGCTC
TTTGCCTTTGCCTTGGACAAGTGGCCAGCAGCGAGAAGCTGCTTAACTGC
TACTGGGGCACGTGGGCCAACTATCGTCCCGGAGATGGAAAGTTCACACC
CTCCGATATCGATCCCTCCCTGTGCACCCACATCAGCTACACCTTTTTCG
GAATCAGCGATGCCGGCGAGTTCAAGTCCCTGGACACCTGGCTGGACATG
GACGATGGTCTGGGCTTTATTAGCCAGACAATTGCTCTGAAGCAGCGCAA
TCCAAACCTCAAGATTTTGGCGGTGGTTGGTGGTTGGAATGAAGGTTCCA
CCAAATACTCGGCCATGGCAGCCGATCCTGCCAAGCGTGCCACCTTCGTC
TCCACTTCCCTGGCCTTCATTCAGCAGTATAGCTTTGATGGCTTGGATTT
GGATTGGGAGTACCCTGGTCAGCGCGGAGGCAGTGAAGCGGATCGCGAGA
ACTTTGTTACTCTGCTGCGCGAGATTAAGGAGACCTACGATCAGTATGGC
TTGGAGCTGGGTATTGCTGTCGGTGCGTCCGAGAAATCGGCCAGCATCTC
ATACGACATTCCGGCCATTTCGCAGCACTTGACTTTCATTAACGTTATGA
CCTACGACTTCCACATGGCTCTGGATGGCTATCTGGGTCTCAATGCTCCT
CTGCCCGAAGTCGCCGAATCTATTGATTATTGGCTTTCTCATGGTGCTCC
CGCTGAGAAGCTTATCCTTGGCATTGGCTTCTATGGCCACAGCTACCAGA
TGTCCGATAGCTCACAGAACTGGCCCGGTGCTGCGTGCATTGGTCCCGGA
ACTGCTGGCGTCTACACGCGGGAGAACGGATTCCTGGGCTACCACGAGAT
CTGCCTGAACAACTGGCAAACCGTGTTCGATCAGGAGAACGGTGCTCCAT
ATGCCTTCCAGGGTGATCAGTGGATCGGCTATGACAATCCCGAAAGCATC
CAGCTGAAGATGCAGTTGGTCGAGTCCCGCAATCTGGGTGGTGCCATGAT
GTGGTCCATCGAGACGGATGATTTCCGTGGTCTGTGCGGCGAGTCCTATC
CACTGCTGAAGACCATGAATCGTGCTCTTGGCAGGGAAGTGAGTGGAGGA
AGTGGCGGAGGCGGCGGCGGCGGAGGAGAAGGAAGTGTTACTCCCGCTCC
AACGGCTGCTCCCACTTCGTCACCCACTCCGGCTCCCACTCCCGGTGGTG
GAAGTGGTGGCAACGAGTGCGCCCAAGATGGTTTCTTTGTTTTGGAAAGC
GATTGCAATAAGTTCTACCAGTGCGTCGGTGGCGTCCGTTACGACTTCCA
ATGCGGAGCAGGGCTGTGCTTCAATACCATTACCTTAAATTGCGACTGGC
CGTAAAAGCTTTCTAGACCAT
BS12876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht4-RA | 1389 | CG3986-PA | 1..1389 | 17..1405 | 6945 | 100 | Plus |
| Cht9-RA | 1107 | CG10531-PA | 70..1085 | 95..1116 | 275 | 68.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht4-RA | 1473 | CG3986-RA | 30..1420 | 17..1407 | 6955 | 100 | Plus |
| Cht9-RA | 1161 | CG10531-RA | 84..1099 | 95..1116 | 275 | 68.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21065432..21066096 | 1407..743 | 3325 | 100 | Minus |
| 2R | 25286936 | 2R | 21066416..21066687 | 534..263 | 1360 | 100 | Minus |
| 2R | 25286936 | 2R | 21066149..21066360 | 746..535 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 21066748..21066925 | 264..87 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 21066989..21067058 | 86..17 | 350 | 100 | Minus |
| 2R | 25286936 | 2R | 21068054..21068285 | 1116..885 | 260 | 74.1 | Minus |
| 2R | 25286936 | 2R | 21068979..21069131 | 247..95 | 255 | 77.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:58:46 has no hits.
BS12876.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:53 Download gff for
BS12876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 30..1416 | 17..1403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:45 Download gff for
BS12876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 30..1416 | 17..1403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:01 Download gff for
BS12876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 30..1416 | 17..1403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:11 Download gff for
BS12876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 30..1416 | 17..1403 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:11 Download gff for
BS12876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21066749..21066925 | 87..263 | 100 | <- | Minus |
| 2R | 21066989..21067058 | 17..86 | 100 | | Minus |
| 2R | 21065436..21066095 | 744..1403 | 100 | <- | Minus |
| 2R | 21066152..21066360 | 535..743 | 100 | <- | Minus |
| 2R | 21066416..21066686 | 264..534 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:45 Download gff for
BS12876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16954254..16954430 | 87..263 | 100 | <- | Minus |
| arm_2R | 16954494..16954563 | 17..86 | 100 | | Minus |
| arm_2R | 16952941..16953600 | 744..1403 | 100 | <- | Minus |
| arm_2R | 16953657..16953865 | 535..743 | 100 | <- | Minus |
| arm_2R | 16953921..16954191 | 264..534 | 100 | <- | Minus |
BS12876.3prime Sequence
839 bp (758 high quality bases) assembled on 2006-10-13
> BS12876.3prime
ATGGTCTAGAAAGCTTTTACGGCCAGTCGCAATTTAAGGTAATGGTATTG
AAGCACAGCCCTGCTCCGCATTGGAAGTCGTAACGGACGCCACCGACGCA
CTGGTAGAACTTATTGCAATCGCTTTCCAAAACAAAGAAACCATCTTGGG
CGCACTCGTTGCCACCACTTCCACCACCGGGAGTGGGAGCCGGAGTGGGT
GACGAAGTGGGAGCAGCCGTTGGAGCGGGAGTAACACTTCCTTCTCCTCC
GCCGCCGCCGCCTCCGCCACTTCCTCCACTCACTTCCCTGCCAAGAGCAC
GATTCATGGTCTTCAGCAGTGGATAGGACTCGCCGCACAGACCACGGAAA
TCATCCGTCTCGATGGACCACATCATGGCACCACCCAGATTGCGGGACTC
GACCAACTGCATCTTCAGCTGGATGCTTTCGGGATTGTCATAGCCGATCC
ACTGATCACCCTGGAAGGCATATGGAGCACCGTTCTCCTGATCGAACACG
GTTTGCCAGTTGTTCAGGCAGATCTCGTGGTAGCCCAGGAATCCGTTCTC
CCGCGTGTAGACGCCAGCAGTTCCGGGACCAATGCACGCAGCACCGGGCC
AGTTCTGTGAGCTATCGGACATCTGGTAGCTGTGGCCATAGAAGCCAATG
CCAAGGATAAGCTTCTCAGCGGGAGCACCATGAGAAAGCCAATAATCAAT
AGATTCGGCGACTTCGGGCAGAGGAGCATTGAGACCCAGATAGCCATCCA
GAGCCATGTGGAAGTCGTAAGTCATAACGTTAATGAAAGTCAAGTGCTGC
GAAATGGGCGGAATGTCGTATGAGATGCTGGCCGATTTC
BS12876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3986-PA | 1389 | Cht4-RA | 567..1389 | 839..17 | 4065 | 99.7 | Minus |
| CG2054-PA | 1455 | Cht2-RA | 921..964 | 560..517 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht4-RA | 1473 | CG3986-RA | 596..1420 | 839..15 | 4095 | 99.8 | Minus |
| Cht9-RA | 1161 | CG10531-RA | 868..1099 | 537..306 | 260 | 74.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21065432..21066096 | 15..679 | 3325 | 100 | Plus |
| 2R | 25286936 | 2R | 21066149..21066312 | 676..839 | 790 | 98.8 | Plus |
| 2R | 25286936 | 2R | 21068054..21068285 | 306..537 | 260 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:46:48 has no hits.
BS12876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:29 Download gff for
BS12876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3986-PA | 567..1389 | 17..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:38 Download gff for
BS12876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 596..1424 | 9..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:46 Download gff for
BS12876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 596..1424 | 9..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:46 Download gff for
BS12876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21066152..21066312 | 679..839 | 98 | | Plus |
| 2R | 21065428..21066095 | 9..678 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:38 Download gff for
BS12876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16952933..16953600 | 9..678 | 99 | <- | Plus |
| arm_2R | 16953657..16953817 | 679..839 | 98 | | Plus |
BS12876.pep Sequence
Translation from 16 to 1404
> BS12876.pep
MKLVSIWALAALCLCLGQVASSEKLLNCYWGTWANYRPGDGKFTPSDIDP
SLCTHISYTFFGISDAGEFKSLDTWLDMDDGLGFISQTIALKQRNPNLKI
LAVVGGWNEGSTKYSAMAADPAKRATFVSTSLAFIQQYSFDGLDLDWEYP
GQRGGSEADRENFVTLLREIKETYDQYGLELGIAVGASEKSASISYDIPA
ISQHLTFINVMTYDFHMALDGYLGLNAPLPEVAESIDYWLSHGAPAEKLI
LGIGFYGHSYQMSDSSQNWPGAACIGPGTAGVYTRENGFLGYHEICLNNW
QTVFDQENGAPYAFQGDQWIGYDNPESIQLKMQLVESRNLGGAMMWSIET
DDFRGLCGESYPLLKTMNRALGREVSGGSGGGGGGGGEGSVTPAPTAAPT
SSPTPAPTPGGGSGGNECAQDGFFVLESDCNKFYQCVGGVRYDFQCGAGL
CFNTITLNCDWP*
BS12876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht4-PA | 462 | CG3986-PA | 1..462 | 1..462 | 2513 | 100 | Plus |
| Cht9-PA | 368 | CG10531-PA | 3..366 | 2..371 | 1274 | 63 | Plus |
| Cht8-PA | 476 | CG9357-PA | 26..470 | 21..461 | 979 | 43.7 | Plus |
| Cht2-PB | 484 | CG2054-PB | 40..428 | 23..370 | 723 | 39.9 | Plus |
| Cht2-PC | 484 | CG2054-PC | 40..428 | 23..370 | 723 | 39.9 | Plus |
