Clone Sequence Records
BS12877.3prime Sequence
785 bp (763 high quality bases) assembled on 2006-10-13
> BS12877.3prime
ATGGTCTAGAAAGCTTTTAATATGGCGCTTGCTTGCGTGATTTCTTCTCC
TTCCTGGCCTTCAGTTTTTCACTGCTGAACGCCGTTCCACTTGCGTCCTG
TGCCCAAACCGTAACAATGCCGGATTCTCCGCCTGTAAAAAGTAAACTTC
TCTTTGAATCGAAAAGACTATCTCTGACGATCTGCTTGTTTCCCTGGAAA
TTGGCCAATGGCTGGAGGCTGTTCTTCGAGGTAACGCTAACGGAGCGCAG
GATCTCGCCCTTGTTGAAGTTGGTGCCCGCCAACAGAAAGACTCCTCCGT
CTTCCTGATTGTGGGCATTTATCAGGTTGAAGTTTGCGGCTTTTTTTCTC
CTTATTGCCGCCGTAACATCCGGCCGCTCGAAGGATGCCACCTCGTCGCC
CTCCTCGCACTCGTAGCTCTTGAAATCGCCAGTGGTCGTGACGCAGGATA
TGATGTCCTTGTCGTAGACGTTTCTGTGCCACGCCAACCGGGCCACACTG
CTCTCCGTGTTGAAGGTGTTAAGCAGTGCTTCATCCTCGTCCGGCTCCTT
CACATCGAACACGTTTACTAGCCCGTCCACACTGCCCGTGGCCAGAAGGT
CTGGATTCTGGGCATGGAACCGCAACGAGGTGATATCGTCCTCATGGCTT
TCGAAGTAGACGCCCATTTGCTGGCGCTCCCGAACATCGAAGAACACGAG
GAACGCGTTGCTGTGAAACTGTTCGGTGCCGCAGCAAATAATCCGACCGT
TGGCGTTTCTGTCGAAGCACGAAAGCGATTTGGGC
BS12877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-PA | 1236 | CG12134-RA | 468..1236 | 785..17 | 3845 | 100 | Minus |
CG12134-PB | 1026 | CG12134-RB | 258..1026 | 785..17 | 3845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RB | 1581 | CG12134-RB | 774..1543 | 785..16 | 3850 | 100 | Minus |
CG12134-RA | 1526 | CG12134-RA | 719..1488 | 785..16 | 3850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9971916..9972443 | 785..258 | 2640 | 100 | Minus |
2R | 25286936 | 2R | 9972500..9972742 | 258..16 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:18:13 has no hits.
BS12877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:30 Download gff for
BS12877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-PB | 258..1026 | 17..785 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:29 Download gff for
BS12877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 719..1488 | 16..785 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:35 Download gff for
BS12877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 719..1488 | 16..785 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:35 Download gff for
BS12877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9971916..9972443 | 258..785 | 100 | -> | Minus |
2R | 9972501..9972742 | 16..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:29 Download gff for
BS12877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5859421..5859948 | 258..785 | 100 | -> | Minus |
arm_2R | 5860006..5860247 | 16..257 | 100 | | Minus |
BS12877.5prime Sequence
864 bp (796 high quality bases) assembled on 2006-10-13
> BS12877.5prime
GAAGTTATCAGTCGACATGAGCGACTTTAACAAATATTGCGAAGAAGCTG
CGAGGGAAGCGCTTCCGGACTCGGAAGACGAGGAAGACATCGGCGATGAG
GACACTTGTAGCGCACAGGATCTTGCCGCCGAATTCCAGCTGAAGTACAA
GCCGCAGGACGAAGTCAGTGTGTCCTTGCAGCGTGAATATGTTCTTAGCC
TGGCCGCAGATCAAGGATTCTCACGGATGGCCGCCGGACTGTCCAATTCA
GCAGTGCATATCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTT
TAGCTATCTGCCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCG
TTCGTTTCCTCGACGAAGGACCACACAACATCCTGGTCGGCACCACCGAT
GGCTACGTGCGCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTT
CAAGTACACGCAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGT
GCTTCGACAGAAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAG
TTTCACAGCAACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCA
AATGGGCGTCTACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGT
TCCATGCCCAGAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTA
GTAAACGTGTTCGATGTGAAGGAGCCGGACGAGGATGANGCACTGCTTAA
CACCTTCAACACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACG
TCTACGACAAGGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAG
AGCTACGAGTGCGA
BS12877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-PA | 1236 | CG12134-RA | 1..848 | 17..864 | 4221 | 99.8 | Plus |
CG12134-PB | 1026 | CG12134-RB | 1..638 | 227..864 | 3171 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RA | 1526 | CG12134-RA | 252..1099 | 17..864 | 4229 | 99.9 | Plus |
CG12134-RB | 1581 | CG12134-RB | 333..1154 | 43..864 | 4099 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9971475..9972296 | 43..864 | 4099 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:01:23 has no hits.
BS12877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:30 Download gff for
BS12877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:06 Download gff for
BS12877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 247..1098 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:37 Download gff for
BS12877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 247..1098 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:37 Download gff for
BS12877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9971477..9972295 | 45..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:06 Download gff for
BS12877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5858982..5859800 | 45..863 | 99 | | Plus |
BS12877.complete Sequence
1268 bp assembled on 2006-11-01
GenBank Submission: FJ637322
> BS12877.complete
GAAGTTATCAGTCGACATGAGCGACTTTAACAAATATTGCGAAGAAGCTG
CGAGGGAAGCGCTTCCGGACTCGGAAGACGAGGAAGACATCGGCGATGAG
GACACTTGTAGCGCACAGGATCTTGCCGCCGAATTCCAGCTGAAGTACAA
GCCGCAGGACGAAGTCAGTGTGTCCTTGCAGCGTGAATATGTTCTTAGCC
TGGCCGCAGATCAAGGATTCTCACGGATGGCCGCCGGACTGTCCAATTCA
GCAGTGCATATCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTT
TAGCTATCTGCCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCG
TTCGTTTCCTCGACGAAGGACCACACAACATCCTGGTCGGCACCACCGAT
GGCTACGTGCGCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTT
CAAGTACACGCAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGT
GCTTCGACAGAAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAG
TTTCACAGCAACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCA
AATGGGCGTCTACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGT
TCCATGCCCAGAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTA
GTAAACGTGTTCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAA
CACCTTCAACACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACG
TCTACGACAAGGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAG
AGCTACGAGTGCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGA
TGTTACGGCGGCAATAAGGAGAAAAAAAGCCGCAAACTTCAACCTGATAA
ATGCCCACAATCAGGAAGACGGAGGAGTCTTTCTGTTGGCGGGCACCAAC
TTCAACAAGGGCGAGATCCTGCGCTCCGTTAGCGTTACCTCGAAGAACAG
CCTCCAGCCATTGGCCAATTTCCAGGGAAACAAGCAGATCGTCAGAGATA
GTCTTTTCGATTCAAAGAGAAGTTTACTTTTTACAGGCGGAGAATCCGGC
ATTGTTACGGTTTGGGCACAGGACGCAAGTGGAACGGCGTTCAGCAGTGA
AAAACTGAAGGCCAGGAAGGAGAAGAAATCACGCAAGCAAGCGCCATATT
AAAAGCTTTCTAGACCAT
BS12877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RA | 1236 | CG12134-PA | 1..1236 | 17..1252 | 6180 | 100 | Plus |
CG12134-RB | 1026 | CG12134-PB | 1..1026 | 227..1252 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RA | 1526 | CG12134-RA | 252..1488 | 17..1253 | 6185 | 100 | Plus |
CG12134-RB | 1581 | CG12134-RB | 333..1543 | 43..1253 | 6055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9971475..9972443 | 43..1011 | 4845 | 100 | Plus |
2R | 25286936 | 2R | 9972500..9972742 | 1011..1253 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:21:26 has no hits.
BS12877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:37 Download gff for
BS12877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 1..1236 | 17..1252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:45 Download gff for
BS12877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 241..1482 | 9..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:04 Download gff for
BS12877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 252..1485 | 17..1250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:37 Download gff for
BS12877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 241..1482 | 9..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:46 Download gff for
BS12877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 252..1485 | 17..1250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:46 Download gff for
BS12877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9971394..9971421 | 17..44 | 100 | -> | Plus |
2R | 9971477..9972443 | 45..1011 | 100 | -> | Plus |
2R | 9972501..9972739 | 1012..1250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:04 Download gff for
BS12877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5858899..5858926 | 17..44 | 100 | -> | Plus |
arm_2R | 5858982..5859948 | 45..1011 | 100 | -> | Plus |
arm_2R | 5860006..5860244 | 1012..1250 | 100 | | Plus |
BS12877.pep Sequence
Translation from 16 to 1251
> BS12877.pep
MSDFNKYCEEAAREALPDSEDEEDIGDEDTCSAQDLAAEFQLKYKPQDEV
SVSLQREYVLSLAADQGFSRMAAGLSNSAVHIYNLDSGAGKLENFSYLPP
TDSPQSVSICGVRFLDEGPHNILVGTTDGYVRLYDLRLRGEQARFKYTQH
PNVPPVPKSLSCFDRNANGRIICCGTEQFHSNAFLVFFDVRERQQMGVYF
ESHEDDITSLRFHAQNPDLLATGSVDGLVNVFDVKEPDEDEALLNTFNTE
SSVARLAWHRNVYDKDIISCVTTTGDFKSYECEEGDEVASFERPDVTAAI
RRKKAANFNLINAHNQEDGGVFLLAGTNFNKGEILRSVSVTSKNSLQPLA
NFQGNKQIVRDSLFDSKRSLLFTGGESGIVTVWAQDASGTAFSSEKLKAR
KEKKSRKQAPY*
BS12877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-PA | 411 | CG12134-PA | 1..411 | 1..411 | 2136 | 100 | Plus |
CG12134-PB | 341 | CG12134-PB | 1..341 | 71..411 | 1778 | 100 | Plus |