Clone BS12877 Report

Search the DGRC for BS12877

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG12134-RA
Protein status:BS12877.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12877.3prime Sequence

785 bp (763 high quality bases) assembled on 2006-10-13

> BS12877.3prime
ATGGTCTAGAAAGCTTTTAATATGGCGCTTGCTTGCGTGATTTCTTCTCC
TTCCTGGCCTTCAGTTTTTCACTGCTGAACGCCGTTCCACTTGCGTCCTG
TGCCCAAACCGTAACAATGCCGGATTCTCCGCCTGTAAAAAGTAAACTTC
TCTTTGAATCGAAAAGACTATCTCTGACGATCTGCTTGTTTCCCTGGAAA
TTGGCCAATGGCTGGAGGCTGTTCTTCGAGGTAACGCTAACGGAGCGCAG
GATCTCGCCCTTGTTGAAGTTGGTGCCCGCCAACAGAAAGACTCCTCCGT
CTTCCTGATTGTGGGCATTTATCAGGTTGAAGTTTGCGGCTTTTTTTCTC
CTTATTGCCGCCGTAACATCCGGCCGCTCGAAGGATGCCACCTCGTCGCC
CTCCTCGCACTCGTAGCTCTTGAAATCGCCAGTGGTCGTGACGCAGGATA
TGATGTCCTTGTCGTAGACGTTTCTGTGCCACGCCAACCGGGCCACACTG
CTCTCCGTGTTGAAGGTGTTAAGCAGTGCTTCATCCTCGTCCGGCTCCTT
CACATCGAACACGTTTACTAGCCCGTCCACACTGCCCGTGGCCAGAAGGT
CTGGATTCTGGGCATGGAACCGCAACGAGGTGATATCGTCCTCATGGCTT
TCGAAGTAGACGCCCATTTGCTGGCGCTCCCGAACATCGAAGAACACGAG
GAACGCGTTGCTGTGAAACTGTTCGGTGCCGCAGCAAATAATCCGACCGT
TGGCGTTTCTGTCGAAGCACGAAAGCGATTTGGGC

BS12877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 1236 CG12134-RA 468..1236 785..17 3845 100 Minus
CG12134-PB 1026 CG12134-RB 258..1026 785..17 3845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1581 CG12134-RB 774..1543 785..16 3850 100 Minus
CG12134-RA 1526 CG12134-RA 719..1488 785..16 3850 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971916..9972443 785..258 2640 100 Minus
2R 25286936 2R 9972500..9972742 258..16 1215 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:18:13 has no hits.

BS12877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:30 Download gff for BS12877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PB 258..1026 17..785 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:29 Download gff for BS12877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 719..1488 16..785 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:35 Download gff for BS12877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 719..1488 16..785 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:35 Download gff for BS12877.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9971916..9972443 258..785 100 -> Minus
2R 9972501..9972742 16..257 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:29 Download gff for BS12877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5859421..5859948 258..785 100 -> Minus
arm_2R 5860006..5860247 16..257 100   Minus

BS12877.5prime Sequence

864 bp (796 high quality bases) assembled on 2006-10-13

> BS12877.5prime
GAAGTTATCAGTCGACATGAGCGACTTTAACAAATATTGCGAAGAAGCTG
CGAGGGAAGCGCTTCCGGACTCGGAAGACGAGGAAGACATCGGCGATGAG
GACACTTGTAGCGCACAGGATCTTGCCGCCGAATTCCAGCTGAAGTACAA
GCCGCAGGACGAAGTCAGTGTGTCCTTGCAGCGTGAATATGTTCTTAGCC
TGGCCGCAGATCAAGGATTCTCACGGATGGCCGCCGGACTGTCCAATTCA
GCAGTGCATATCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTT
TAGCTATCTGCCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCG
TTCGTTTCCTCGACGAAGGACCACACAACATCCTGGTCGGCACCACCGAT
GGCTACGTGCGCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTT
CAAGTACACGCAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGT
GCTTCGACAGAAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAG
TTTCACAGCAACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCA
AATGGGCGTCTACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGT
TCCATGCCCAGAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTA
GTAAACGTGTTCGATGTGAAGGAGCCGGACGAGGATGANGCACTGCTTAA
CACCTTCAACACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACG
TCTACGACAAGGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAG
AGCTACGAGTGCGA

BS12877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 1236 CG12134-RA 1..848 17..864 4221 99.8 Plus
CG12134-PB 1026 CG12134-RB 1..638 227..864 3171 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RA 1526 CG12134-RA 252..1099 17..864 4229 99.9 Plus
CG12134-RB 1581 CG12134-RB 333..1154 43..864 4099 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971475..9972296 43..864 4099 99.9 Plus
Blast to na_te.dros performed on 2015-01-30 18:01:23 has no hits.

BS12877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:30 Download gff for BS12877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PA 1..847 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:06 Download gff for BS12877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 247..1098 9..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:37 Download gff for BS12877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 247..1098 9..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:37 Download gff for BS12877.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9971477..9972295 45..863 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:06 Download gff for BS12877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5858982..5859800 45..863 99   Plus

BS12877.complete Sequence

1268 bp assembled on 2006-11-01

GenBank Submission: FJ637322

> BS12877.complete
GAAGTTATCAGTCGACATGAGCGACTTTAACAAATATTGCGAAGAAGCTG
CGAGGGAAGCGCTTCCGGACTCGGAAGACGAGGAAGACATCGGCGATGAG
GACACTTGTAGCGCACAGGATCTTGCCGCCGAATTCCAGCTGAAGTACAA
GCCGCAGGACGAAGTCAGTGTGTCCTTGCAGCGTGAATATGTTCTTAGCC
TGGCCGCAGATCAAGGATTCTCACGGATGGCCGCCGGACTGTCCAATTCA
GCAGTGCATATCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTT
TAGCTATCTGCCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCG
TTCGTTTCCTCGACGAAGGACCACACAACATCCTGGTCGGCACCACCGAT
GGCTACGTGCGCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTT
CAAGTACACGCAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGT
GCTTCGACAGAAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAG
TTTCACAGCAACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCA
AATGGGCGTCTACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGT
TCCATGCCCAGAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTA
GTAAACGTGTTCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAA
CACCTTCAACACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACG
TCTACGACAAGGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAG
AGCTACGAGTGCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGA
TGTTACGGCGGCAATAAGGAGAAAAAAAGCCGCAAACTTCAACCTGATAA
ATGCCCACAATCAGGAAGACGGAGGAGTCTTTCTGTTGGCGGGCACCAAC
TTCAACAAGGGCGAGATCCTGCGCTCCGTTAGCGTTACCTCGAAGAACAG
CCTCCAGCCATTGGCCAATTTCCAGGGAAACAAGCAGATCGTCAGAGATA
GTCTTTTCGATTCAAAGAGAAGTTTACTTTTTACAGGCGGAGAATCCGGC
ATTGTTACGGTTTGGGCACAGGACGCAAGTGGAACGGCGTTCAGCAGTGA
AAAACTGAAGGCCAGGAAGGAGAAGAAATCACGCAAGCAAGCGCCATATT
AAAAGCTTTCTAGACCAT

BS12877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RA 1236 CG12134-PA 1..1236 17..1252 6180 100 Plus
CG12134-RB 1026 CG12134-PB 1..1026 227..1252 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RA 1526 CG12134-RA 252..1488 17..1253 6185 100 Plus
CG12134-RB 1581 CG12134-RB 333..1543 43..1253 6055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971475..9972443 43..1011 4845 100 Plus
2R 25286936 2R 9972500..9972742 1011..1253 1215 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:21:26 has no hits.

BS12877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:37 Download gff for BS12877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 1..1236 17..1252 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:45 Download gff for BS12877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 241..1482 9..1253 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:04 Download gff for BS12877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 252..1485 17..1250 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:37 Download gff for BS12877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 241..1482 9..1253 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:46 Download gff for BS12877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 252..1485 17..1250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:46 Download gff for BS12877.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9971394..9971421 17..44 100 -> Plus
2R 9971477..9972443 45..1011 100 -> Plus
2R 9972501..9972739 1012..1250 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:04 Download gff for BS12877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5858899..5858926 17..44 100 -> Plus
arm_2R 5858982..5859948 45..1011 100 -> Plus
arm_2R 5860006..5860244 1012..1250 100   Plus

BS12877.pep Sequence

Translation from 16 to 1251

> BS12877.pep
MSDFNKYCEEAAREALPDSEDEEDIGDEDTCSAQDLAAEFQLKYKPQDEV
SVSLQREYVLSLAADQGFSRMAAGLSNSAVHIYNLDSGAGKLENFSYLPP
TDSPQSVSICGVRFLDEGPHNILVGTTDGYVRLYDLRLRGEQARFKYTQH
PNVPPVPKSLSCFDRNANGRIICCGTEQFHSNAFLVFFDVRERQQMGVYF
ESHEDDITSLRFHAQNPDLLATGSVDGLVNVFDVKEPDEDEALLNTFNTE
SSVARLAWHRNVYDKDIISCVTTTGDFKSYECEEGDEVASFERPDVTAAI
RRKKAANFNLINAHNQEDGGVFLLAGTNFNKGEILRSVSVTSKNSLQPLA
NFQGNKQIVRDSLFDSKRSLLFTGGESGIVTVWAQDASGTAFSSEKLKAR
KEKKSRKQAPY*

BS12877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 411 CG12134-PA 1..411 1..411 2136 100 Plus
CG12134-PB 341 CG12134-PB 1..341 71..411 1778 100 Plus