Clone Sequence Records
BS12879.3prime Sequence
450 bp (450 high quality bases) assembled on 2006-10-13
> BS12879.3prime
ATGGTCTAGAAAGCTTTTATGATAACAAATACTTCCGACCAAAGATCTCC
GACTTCTTCTCAAACATCGGAGATTTAATGGGTGTGTTGATGCGATAGAA
GGCATTCATGGAGTTTTTGATATACGTGTCATACATCTCGTTAAAGAAGT
TCTTGATTCCCTCGTCGTTTTTGTTGTCATGAACGATGATGAATCGTATT
TGGCTGGCTGTGATGAAGGCCGAAACAAACCACTGATTGAATCTATCAAT
GGATTTCAGCTGCATATTGGCCGTCTTCCATTTGTGCTCATCCACCAAAT
CCAAGGCGGCATGGGCAATAAACTGGGTGAGGTGCCTGTGGTCCTCTTTC
CTTAGTTCCTTGTTCACGGTGCTGAATTCCTTCTCGTAAATGGGATTATC
ATTTTGACCCACAATAACAAAGTAGTATGTGGACATGTCGACTGATAACT
BS12879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5161-PA | 420 | CG5161-RA | 1..420 | 436..17 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs20-RA | 575 | CG5161-RA | 51..471 | 436..16 | 2105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16131105..16131439 | 16..350 | 1675 | 100 | Plus |
3L | 28110227 | 3L | 16131496..16131582 | 350..436 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:09:58 has no hits.
BS12879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:32 Download gff for
BS12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-PA | 1..420 | 17..436 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:22 Download gff for
BS12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)72Dh-RA | 43..474 | 10..445 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:02 Download gff for
BS12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs20-RA | 43..474 | 10..445 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:02 Download gff for
BS12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16131102..16131438 | 10..349 | 99 | <- | Plus |
3L | 16131496..16131580 | 350..434 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:22 Download gff for
BS12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16124202..16124538 | 10..349 | 99 | <- | Plus |
arm_3L | 16124596..16124680 | 350..434 | 100 | -> | Plus |
BS12879.5prime Sequence
450 bp (450 high quality bases) assembled on 2006-10-13
> BS12879.5prime
GAAGTTATCAGTCGACATGTCCACATACTACTTTGTTATTGTGGGTCAAA
ATGATAATCCCATTTACGAGAAGGAATTCAGCACCGTGAACAAGGAACTA
AGGAAAGAGGACCACAGGCACCTCACCCAGTTTATTGCCCATGCCGCCTT
GGATTTGGTGGATGAGCACAAATGGAAGACGGCCAATATGCAGCTGAAAT
CCATTGATAGATTCAATCAGTGGTTTGTTTCGGCCTTCATCACAGCCAGC
CAAATACGATTCATCATCGTTCATGACAACAAAAACGACGAGGGAATCAA
GAACTTCTTTAACGAGATGTATGACACGTATATCAAAAACTCCATGAATG
CCTTCTATCGCATCAACACACCCATTAAATCTCCGATGTTTGAGAAGAAG
TCGGAGATCTTTGGTCGGAAGTATTTGTTATCATAAAAGCTTTCTAGACC
BS12879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5161-PA | 420 | CG5161-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs20-RA | 575 | CG5161-RA | 51..471 | 17..437 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16131105..16131439 | 437..103 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 16131496..16131582 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:02:34 has no hits.
BS12879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:32 Download gff for
BS12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-PA | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:17 Download gff for
BS12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)72Dh-RA | 43..474 | 8..443 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:46 Download gff for
BS12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs20-RA | 43..474 | 8..443 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:46 Download gff for
BS12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16131102..16131438 | 104..443 | 99 | <- | Minus |
3L | 16131496..16131580 | 19..103 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:17 Download gff for
BS12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16124202..16124538 | 104..443 | 99 | <- | Minus |
arm_3L | 16124596..16124680 | 19..103 | 100 | -> | Minus |
BS12879.complete Sequence
452 bp assembled on 2006-11-01
GenBank Submission: FJ637324
> BS12879.complete
GAAGTTATCAGTCGACATGTCCACATACTACTTTGTTATTGTGGGTCAAA
ATGATAATCCCATTTACGAGAAGGAATTCAGCACCGTGAACAAGGAACTA
AGGAAAGAGGACCACAGGCACCTCACCCAGTTTATTGCCCATGCCGCCTT
GGATTTGGTGGATGAGCACAAATGGAAGACGGCCAATATGCAGCTGAAAT
CCATTGATAGATTCAATCAGTGGTTTGTTTCGGCCTTCATCACAGCCAGC
CAAATACGATTCATCATCGTTCATGACAACAAAAACGACGAGGGAATCAA
GAACTTCTTTAACGAGATGTATGACACGTATATCAAAAACTCCATGAATG
CCTTCTATCGCATCAACACACCCATTAAATCTCCGATGTTTGAGAAGAAG
TCGGAGATCTTTGGTCGGAAGTATTTGTTATCATAAAAGCTTTCTAGACC
AT
BS12879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs20-RA | 420 | CG5161-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs20-RA | 575 | CG5161-RA | 51..471 | 17..437 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16131105..16131439 | 437..103 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 16131496..16131582 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:41:07 has no hits.
BS12879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:11 Download gff for
BS12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-RA | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:04 Download gff for
BS12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-RA | 14..445 | 8..443 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:08 Download gff for
BS12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)72Dh-RA | 51..468 | 17..434 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:11 Download gff for
BS12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-RA | 14..445 | 8..443 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:35 Download gff for
BS12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs20-RA | 51..468 | 17..434 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:35 Download gff for
BS12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16131108..16131438 | 104..434 | 100 | <- | Minus |
3L | 16131496..16131582 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:08 Download gff for
BS12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16124208..16124538 | 104..434 | 100 | <- | Minus |
arm_3L | 16124596..16124682 | 17..103 | 100 | | Minus |
BS12879.pep Sequence
Translation from 16 to 435
> BS12879.pep
MSTYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDE
HKWKTANMQLKSIDRFNQWFVSAFITASQIRFIIVHDNKNDEGIKNFFNE
MYDTYIKNSMNAFYRINTPIKSPMFEKKSEIFGRKYLLS*
BS12879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs20-PA | 139 | CG5161-PA | 1..139 | 1..139 | 735 | 100 | Plus |