Clone BS12879 Report

Search the DGRC for BS12879

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptTrs20-RA
Protein status:BS12879.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12879.3prime Sequence

450 bp (450 high quality bases) assembled on 2006-10-13

> BS12879.3prime
ATGGTCTAGAAAGCTTTTATGATAACAAATACTTCCGACCAAAGATCTCC
GACTTCTTCTCAAACATCGGAGATTTAATGGGTGTGTTGATGCGATAGAA
GGCATTCATGGAGTTTTTGATATACGTGTCATACATCTCGTTAAAGAAGT
TCTTGATTCCCTCGTCGTTTTTGTTGTCATGAACGATGATGAATCGTATT
TGGCTGGCTGTGATGAAGGCCGAAACAAACCACTGATTGAATCTATCAAT
GGATTTCAGCTGCATATTGGCCGTCTTCCATTTGTGCTCATCCACCAAAT
CCAAGGCGGCATGGGCAATAAACTGGGTGAGGTGCCTGTGGTCCTCTTTC
CTTAGTTCCTTGTTCACGGTGCTGAATTCCTTCTCGTAAATGGGATTATC
ATTTTGACCCACAATAACAAAGTAGTATGTGGACATGTCGACTGATAACT

BS12879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5161-PA 420 CG5161-RA 1..420 436..17 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Trs20-RA 575 CG5161-RA 51..471 436..16 2105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16131105..16131439 16..350 1675 100 Plus
3L 28110227 3L 16131496..16131582 350..436 435 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:09:58 has no hits.

BS12879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:32 Download gff for BS12879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5161-PA 1..420 17..436 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:22 Download gff for BS12879.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)72Dh-RA 43..474 10..445 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:02 Download gff for BS12879.3prime
Subject Subject Range Query Range Percent Splice Strand
Trs20-RA 43..474 10..445 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:02 Download gff for BS12879.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16131102..16131438 10..349 99 <- Plus
3L 16131496..16131580 350..434 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:22 Download gff for BS12879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16124202..16124538 10..349 99 <- Plus
arm_3L 16124596..16124680 350..434 100 -> Plus

BS12879.5prime Sequence

450 bp (450 high quality bases) assembled on 2006-10-13

> BS12879.5prime
GAAGTTATCAGTCGACATGTCCACATACTACTTTGTTATTGTGGGTCAAA
ATGATAATCCCATTTACGAGAAGGAATTCAGCACCGTGAACAAGGAACTA
AGGAAAGAGGACCACAGGCACCTCACCCAGTTTATTGCCCATGCCGCCTT
GGATTTGGTGGATGAGCACAAATGGAAGACGGCCAATATGCAGCTGAAAT
CCATTGATAGATTCAATCAGTGGTTTGTTTCGGCCTTCATCACAGCCAGC
CAAATACGATTCATCATCGTTCATGACAACAAAAACGACGAGGGAATCAA
GAACTTCTTTAACGAGATGTATGACACGTATATCAAAAACTCCATGAATG
CCTTCTATCGCATCAACACACCCATTAAATCTCCGATGTTTGAGAAGAAG
TCGGAGATCTTTGGTCGGAAGTATTTGTTATCATAAAAGCTTTCTAGACC

BS12879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5161-PA 420 CG5161-RA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Trs20-RA 575 CG5161-RA 51..471 17..437 2105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16131105..16131439 437..103 1675 100 Minus
3L 28110227 3L 16131496..16131582 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:02:34 has no hits.

BS12879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:32 Download gff for BS12879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5161-PA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:17 Download gff for BS12879.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)72Dh-RA 43..474 8..443 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:46 Download gff for BS12879.5prime
Subject Subject Range Query Range Percent Splice Strand
Trs20-RA 43..474 8..443 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:46 Download gff for BS12879.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16131102..16131438 104..443 99 <- Minus
3L 16131496..16131580 19..103 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:17 Download gff for BS12879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16124202..16124538 104..443 99 <- Minus
arm_3L 16124596..16124680 19..103 100 -> Minus

BS12879.complete Sequence

452 bp assembled on 2006-11-01

GenBank Submission: FJ637324

> BS12879.complete
GAAGTTATCAGTCGACATGTCCACATACTACTTTGTTATTGTGGGTCAAA
ATGATAATCCCATTTACGAGAAGGAATTCAGCACCGTGAACAAGGAACTA
AGGAAAGAGGACCACAGGCACCTCACCCAGTTTATTGCCCATGCCGCCTT
GGATTTGGTGGATGAGCACAAATGGAAGACGGCCAATATGCAGCTGAAAT
CCATTGATAGATTCAATCAGTGGTTTGTTTCGGCCTTCATCACAGCCAGC
CAAATACGATTCATCATCGTTCATGACAACAAAAACGACGAGGGAATCAA
GAACTTCTTTAACGAGATGTATGACACGTATATCAAAAACTCCATGAATG
CCTTCTATCGCATCAACACACCCATTAAATCTCCGATGTTTGAGAAGAAG
TCGGAGATCTTTGGTCGGAAGTATTTGTTATCATAAAAGCTTTCTAGACC
AT

BS12879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Trs20-RA 420 CG5161-PA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Trs20-RA 575 CG5161-RA 51..471 17..437 2105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16131105..16131439 437..103 1675 100 Minus
3L 28110227 3L 16131496..16131582 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:41:07 has no hits.

BS12879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:11 Download gff for BS12879.complete
Subject Subject Range Query Range Percent Splice Strand
CG5161-RA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:04 Download gff for BS12879.complete
Subject Subject Range Query Range Percent Splice Strand
CG5161-RA 14..445 8..443 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:08 Download gff for BS12879.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)72Dh-RA 51..468 17..434 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:11 Download gff for BS12879.complete
Subject Subject Range Query Range Percent Splice Strand
CG5161-RA 14..445 8..443 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:35 Download gff for BS12879.complete
Subject Subject Range Query Range Percent Splice Strand
Trs20-RA 51..468 17..434 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:35 Download gff for BS12879.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16131108..16131438 104..434 100 <- Minus
3L 16131496..16131582 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:08 Download gff for BS12879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16124208..16124538 104..434 100 <- Minus
arm_3L 16124596..16124682 17..103 100   Minus

BS12879.pep Sequence

Translation from 16 to 435

> BS12879.pep
MSTYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDE
HKWKTANMQLKSIDRFNQWFVSAFITASQIRFIIVHDNKNDEGIKNFFNE
MYDTYIKNSMNAFYRINTPIKSPMFEKKSEIFGRKYLLS*

BS12879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Trs20-PA 139 CG5161-PA 1..139 1..139 735 100 Plus