Clone Sequence Records
BS12882.3prime Sequence
399 bp (399 high quality bases) assembled on 2006-10-13
> BS12882.3prime
ATGGTCTAGAAAGCTTTTACTTCGGCGGACTGGACTCCGCACCGCCGGCG
ATGGCTGGGGATTGGGCAAAGTCCTGGAACGTGTCCTTGACCTTCTTGAG
GCCCCTGCCTGCGTAGCAGGGCAGCATGTGGATGAAACGGAAGGTGTTCT
TCACGCCCTCGTTGTAGTAGTGCTTGGCCAGGAAGCGCATCTCGCCGGTT
TTGGGCAACTGCGGCACTTCGAAGGGCAGCTGCTTCTCCAGCTTCTGGAC
ATGCGGGCGCAGCTCCGACTTGATGTCGTTGTACAGCTTGTCCGTCTGGT
CAGAGTCTCCCCAGATGCCCACCTTTTGTGTGTAGTAGACGGTTGCGGCC
ACCAGACCGCCGCGCACTAGAAATCCTAGAACCATGTCGACTGATAACT
BS12882.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-PA | 369 | CG7603-RA | 1..369 | 385..17 | 1845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-RA | 762 | CG7603-RA | 180..550 | 387..17 | 1855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17466198..17466556 | 375..17 | 1795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:49:14 has no hits.
BS12882.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:34 Download gff for
BS12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-PA | 1..369 | 17..385 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:03 Download gff for
BS12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 180..553 | 12..387 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:46 Download gff for
BS12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 180..553 | 12..387 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:46 Download gff for
BS12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17466199..17466559 | 12..374 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:03 Download gff for
BS12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17459299..17459659 | 12..374 | 99 | | Minus |
BS12882.complete Sequence
401 bp assembled on 2006-11-01
GenBank Submission: FJ637325
> BS12882.complete
GAAGTTATCAGTCGACATGGTTCTAGGATTTCTAGTGCGCGGCGGTCTGG
TGGCCGCAACCGTCTACTACACACAAAAGGTGGGCATCTGGGGAGACTCT
GACCAGACGGACAAGCTGTACAACGACATCAAGTCGGAGCTGCGCCCGCA
TGTCCAGAAGCTGGAGAAGCAGCTGCCCTTCGAAGTGCCGCAGTTGCCCA
AAACCGGCGAGATGCGCTTCCTGGCCAAGCACTACTACAACGAGGGCGTG
AAGAACACCTTCCGTTTCATCCACATGCTGCCCTGCTACGCAGGCAGGGG
CCTCAAGAAGGTCAAGGACACGTTCCAGGACTTTGCCCAATCCCCAGCCA
TCGCCGGCGGTGCGGAGTCCAGTCCGCCGAAGTAAAAGCTTTCTAGACCA
T
BS12882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-RA | 369 | CG7603-PA | 1..369 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-RA | 762 | CG7603-RA | 180..550 | 15..385 | 1855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17466198..17466556 | 27..385 | 1795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:59:12 has no hits.
BS12882.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:40 Download gff for
BS12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 1..369 | 17..385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:48 Download gff for
BS12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 176..549 | 15..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:02 Download gff for
BS12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 182..548 | 17..383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:40 Download gff for
BS12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 176..549 | 15..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:15 Download gff for
BS12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 182..548 | 17..383 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:15 Download gff for
BS12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17466188..17466554 | 17..383 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:02 Download gff for
BS12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17459288..17459654 | 17..383 | 98 | | Plus |
BS12882.pep Sequence
Translation from 16 to 384
> BS12882.pep
MVLGFLVRGGLVAATVYYTQKVGIWGDSDQTDKLYNDIKSELRPHVQKLE
KQLPFEVPQLPKTGEMRFLAKHYYNEGVKNTFRFIHMLPCYAGRGLKKVK
DTFQDFAQSPAIAGGAESSPPK*
BS12882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-PA | 122 | CG7603-PA | 1..122 | 1..122 | 647 | 100 | Plus |
| CG15296-PB | 169 | CG15296-PB | 1..104 | 1..108 | 159 | 36.1 | Plus |
| CG15296-PA | 169 | CG15296-PA | 1..104 | 1..108 | 159 | 36.1 | Plus |
| CG43328-PB | 241 | CG43328-PB | 1..109 | 1..109 | 156 | 28.4 | Plus |
| CG43328-PA | 241 | CG43328-PA | 1..109 | 1..109 | 156 | 28.4 | Plus |
