Clone BS12886 Report

Search the DGRC for BS12886

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptArfGAP1-RA
Protein status:BS12886.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12886.3prime Sequence

823 bp (738 high quality bases) assembled on 2006-10-13

> BS12886.3prime
ATGGTCTAGAAAGCTTCTAGTTCATCAGCAGATTCCAGGCGTCGTCCTCG
GCAGTGCCTTTGTTGGCGGACGAGGCCGTTGCCGTCTTGGGCTTCACACT
CTTCACGTCCAGGCTCTCGAAGCCCTCGCTCAGCTTCTGCGATGTGTCCT
GCAGCTTCATGTTGCGGCGAGCTGTCGATCCGCCGGACGAAGCGTTCTGG
TAGGAGGTCTCTGAACTCTGATAGTTCGTCGCCTCGAAGCCGGACCAGTC
AGCGTCGCGGGTTAGGCCGGCGGAGGCGGTACCGCCGCCGCTGCTGCTAC
TCAACTGATTGTGGTACGAACTCGAGCTGGTCATGTGCGACTTGCTGTTG
CCGTTGTCCTGCCAGCCGCCCCAGTCGCTGTCGCTGACGCCGCTCTGCTG
ACCCAAGCCTCCGGCCAGATTACCGCCCACGGAATTGGAACGCTGGTAGG
CGCTGCTGTCCTCGAAGTTGGGATCGTTGTATCCGCCCTGCGGCGACGAA
ATGTTGCTGCCCGCCAGATTATTCCAACCTCGTTTGCCCATATCGGTGAC
CTTGCTGGCTACATCGGTAACTCCGCATTGTACGGAATCTAGCAGAGTTC
CCTCTTTAATCTTTGTCGAGGCCAAATTGACGGTGGTGACGGCCTTCTCC
TTGGCGGTGCTGGCCAACTTGGAGGCGTTGGTGGAGAAAAGGCTCCAGCC
AGAGGCCAAAGTGGAAAGCGTCGAGTCGAAAAGCTCCTGAGATTGCGTTT
TCGGTGGTGGTTCGCGTGTGAACCCGAAACCTGCATATTTTCCGCCCTGA
CTCGGTGGCAAGTTTTCTGGCCT

BS12886.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4237-PA 1407 Gap69C-RA 601..1407 823..17 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP1-RA 2085 CG4237-RA 969..1777 823..15 4045 100 Minus
ArfGAP1-RB 2025 CG4237-RB 1179..1717 553..15 2695 100 Minus
ArfGAP1-RB 2025 CG4237-RB 969..1181 823..611 1065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12415334..12415871 15..552 2690 100 Plus
3L 28110227 3L 12416275..12416479 611..815 1025 100 Plus
3L 28110227 3L 12415942..12416006 548..612 325 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:43:44 has no hits.

BS12886.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:36 Download gff for BS12886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4237-PA 601..1407 17..823 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:22 Download gff for BS12886.3prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 969..1777 15..823 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:52 Download gff for BS12886.3prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 969..1777 15..823 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:52 Download gff for BS12886.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12415334..12415869 15..550 100 <- Plus
3L 12415945..12416004 551..610 100 <- Plus
3L 12416275..12416482 611..819 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:22 Download gff for BS12886.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12408434..12408969 15..550 100 <- Plus
arm_3L 12409045..12409104 551..610 100 <- Plus
arm_3L 12409375..12409582 611..819 99   Plus

BS12886.5prime Sequence

830 bp (785 high quality bases) assembled on 2006-10-13

> BS12886.5prime
GAAGTTATCAGTCGACATGGCGAGTCCCAGAACGCGACGGGTGCTCCAGG
AACTGAAACCCCAGGATGAGAACTCGAAATGCTTCGAGTGCGGTACCCAC
AATCCGCAGTGGGTGTCCGTGACCTACGGCATCTGGATCTGCCTGGAGTG
CTCCGGCAAGCATCGCAGTCTGGGCGTGCATCTGTCCTTCGTGCGCTCCG
TCACTATGGATAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGCGGGC
GGCAATCGCAATGCGCGCGAGTTTCTGGAGGATCAGGAGGACTGGAACGA
ACGGGCGCCTATCACGCAGCGTTACAACTCGAAGGCGGCTGCTTTGTACC
GCGATAAGATAGCCACCTTGGCCCAGGGCAAGAGCTGGGATCTCAAGGAG
GCGCAAGGCCGCGTGGGCAGCAACAATAGCTTCAGCTCAGGTGGCTCCAG
CAACAGCAGCTACCAGTCGCGACCCAGTGCAACAGGTTATGGCGGAAACG
GAGGCTATCAGAATGGCGGAGGCGCCGAGCCTGGAGGCTATCAGCAGTAC
CAAACGCAGGAGTTCAAGGACCAGAAGGAGGAGTTCTTCAGCCGACGCCA
AGTGGAGAATGCCTCCAGGCCAGAAAACTTGCCACCGAGTCAGGGCGGAA
AATATGCAGGTTTCGGGTTCACACGCGAACCACCACCGAAAACGCAATCT
CAGGAGCTTTTCGACTCGACGCTTTCCACTTTGGCCTCTGGCTGGAGCCT
TTTCTCCACCAACGCCTCCNAGTTGGCCAGCACCGCCAAGGAGAAGGCCG
TCACCACCGTCAATTTGGCCTCGACAAAGA

BS12886.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4237-PA 1407 Gap69C-RA 1..814 17..830 4051 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP1-RA 2085 CG4237-RA 361..1182 9..830 4069 99.6 Plus
ArfGAP1-RB 2025 CG4237-RB 361..1181 9..829 4064 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12416540..12417092 624..72 2750 99.8 Minus
3L 28110227 3L 12416275..12416479 829..625 1014 99.5 Minus
3L 28110227 3L 12417153..12417220 76..9 310 97.1 Minus
Blast to na_te.dros performed 2015-02-10 17:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 3794..3831 462..499 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1589 417..465 110 69.4 Plus

BS12886.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:37 Download gff for BS12886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4237-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:00 Download gff for BS12886.5prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 355..1181 3..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:57 Download gff for BS12886.5prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 355..1181 3..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:57 Download gff for BS12886.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12416275..12416479 625..829 99 <- Minus
3L 12416540..12417087 77..624 100 <- Minus
3L 12417153..12417226 3..76 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:00 Download gff for BS12886.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12409375..12409579 625..829 99 <- Minus
arm_3L 12409640..12410187 77..624 100 <- Minus
arm_3L 12410253..12410326 3..76 93   Minus

BS12886.complete Sequence

1439 bp assembled on 2006-11-01

GenBank Submission: FJ637326

> BS12886.complete
GAAGTTATCAGTCGACATGGCGAGTCCCAGAACGCGACGGGTGCTCCAGG
AACTGAAACCCCAGGATGAGAACTCGAAATGCTTCGAGTGCGGTACCCAC
AATCCGCAGTGGGTGTCCGTGACCTACGGCATCTGGATCTGCCTGGAGTG
CTCCGGCAAGCATCGCAGTCTGGGCGTGCATCTGTCCTTCGTGCGCTCCG
TCACTATGGATAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGCGGGC
GGCAATCGCAATGCGCGCGAGTTTCTGGAGGATCAGGAGGACTGGAACGA
ACGGGCGCCTATCACGCAGCGTTACAACTCGAAGGCGGCTGCTTTGTACC
GCGATAAGATAGCCACCTTGGCCCAGGGCAAGAGCTGGGATCTCAAGGAG
GCGCAAGGCCGCGTGGGCAGCAACAATAGCTTCAGCTCAGGTGGCTCCAG
CAACAGCAGCTACCAGTCGCGACCCAGTGCAACAGGTTATGGCGGAAACG
GAGGCTATCAGAATGGCGGAGGCGCCGAGCCTGGAGGCTATCAGCAGTAC
CAAACGCAGGAGTTCAAGGACCAGAAGGAGGAGTTCTTCAGCCGACGCCA
AGTGGAGAATGCCTCCAGGCCAGAAAACTTGCCACCGAGTCAGGGCGGAA
AATATGCAGGTTTCGGGTTCACACGCGAACCACCACCGAAAACGCAATCT
CAGGAGCTTTTCGACTCGACGCTTTCCACTTTGGCCTCTGGCTGGAGCCT
TTTCTCCACCAACGCCTCCAAGTTGGCCAGCACCGCCAAGGAGAAGGCCG
TCACCACCGTCAATTTGGCCTCGACAAAGATTAAAGAGGGAACTCTGCTA
GATTCCGTACAATGCGGAGTTACCGATGTAGCCAGCAAGGTCACCGATAT
GGGCAAACGAGGTTGGAATAATCTGGCGGGCAGCAACATTTCGTCGCCGC
AGGGCGGATACAACGATCCCAACTTCGAGGACAGCAGCGCCTACCAGCGT
TCCAATTCCGTGGGCGGTAATCTGGCCGGAGGCTTGGGTCAGCAGAGCGG
CGTCAGCGACAGCGACTGGGGCGGCTGGCAGGACAACGGCAACAGCAAGT
CGCACATGACCAGCTCGAGTTCGTACCACAATCAGTTGAGTAGCAGCAGC
GGCGGCGGTACCGCCTCCGCCGGCCTAACCCGCGACGCTGACTGGTCCGG
CTTCGAGGCGACGAACTATCAGAGTTCAGAGACCTCCTACCAGAACGCTT
CGTCCGGCGGATCGACAGCTCGCCGCAACATGAAGCTGCAGGACACATCG
CAGAAGCTGAGCGAGGGCTTCGAGAGCCTGGACGTGAAGAGTGTGAAGCC
CAAGACGGCAACGGCCTCGTCCGCCAACAAAGGCACTGCCGAGGACGACG
CCTGGAATCTGCTGATGAACTAGAAGCTTTCTAGACCAT

BS12886.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP1-RA 1407 CG4237-PA 1..1407 17..1423 7035 100 Plus
ArfGAP1-RB 1347 CG4237-PB 1..813 17..829 4065 100 Plus
ArfGAP1-RB 1347 CG4237-PB 811..1347 887..1423 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP1-RA 2085 CG4237-RA 361..1777 9..1425 7055 99.9 Plus
ArfGAP1-RB 2025 CG4237-RB 361..1181 9..829 4075 99.8 Plus
ArfGAP1-RB 2025 CG4237-RB 1179..1717 887..1425 2695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12416540..12417092 624..72 2750 99.8 Minus
3L 28110227 3L 12415334..12415871 1425..888 2690 100 Minus
3L 28110227 3L 12416275..12416479 829..625 1025 100 Minus
3L 28110227 3L 12415942..12416006 892..828 325 100 Minus
3L 28110227 3L 12417153..12417220 76..9 310 97.1 Minus
Blast to na_te.dros performed 2014-11-27 08:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 3794..3831 462..499 118 78.9 Plus

BS12886.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:42 Download gff for BS12886.complete
Subject Subject Range Query Range Percent Splice Strand
Gap69C-RA 1..1407 17..1423 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:50 Download gff for BS12886.complete
Subject Subject Range Query Range Percent Splice Strand
Gap69C-RA 478..1900 3..1425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:39 Download gff for BS12886.complete
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 369..1775 17..1423 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:43 Download gff for BS12886.complete
Subject Subject Range Query Range Percent Splice Strand
Gap69C-RA 478..1900 3..1425 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:17 Download gff for BS12886.complete
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 369..1775 17..1423 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:17 Download gff for BS12886.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12415336..12415869 890..1423 100 <- Minus
3L 12415945..12416004 830..889 100 <- Minus
3L 12416275..12416479 625..829 100 <- Minus
3L 12416540..12417087 77..624 100 <- Minus
3L 12417153..12417212 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:39 Download gff for BS12886.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12408436..12408969 890..1423 100 <- Minus
arm_3L 12409045..12409104 830..889 100 <- Minus
arm_3L 12409375..12409579 625..829 100 <- Minus
arm_3L 12409640..12410187 77..624 100 <- Minus
arm_3L 12410253..12410312 17..76 100   Minus

BS12886.pep Sequence

Translation from 16 to 1422

> BS12886.pep
MASPRTRRVLQELKPQDENSKCFECGTHNPQWVSVTYGIWICLECSGKHR
SLGVHLSFVRSVTMDKWKDIELEKMKAGGNRNAREFLEDQEDWNERAPIT
QRYNSKAAALYRDKIATLAQGKSWDLKEAQGRVGSNNSFSSGGSSNSSYQ
SRPSATGYGGNGGYQNGGGAEPGGYQQYQTQEFKDQKEEFFSRRQVENAS
RPENLPPSQGGKYAGFGFTREPPPKTQSQELFDSTLSTLASGWSLFSTNA
SKLASTAKEKAVTTVNLASTKIKEGTLLDSVQCGVTDVASKVTDMGKRGW
NNLAGSNISSPQGGYNDPNFEDSSAYQRSNSVGGNLAGGLGQQSGVSDSD
WGGWQDNGNSKSHMTSSSSYHNQLSSSSGGGTASAGLTRDADWSGFEATN
YQSSETSYQNASSGGSTARRNMKLQDTSQKLSEGFESLDVKSVKPKTATA
SSANKGTAEDDAWNLLMN*

BS12886.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP1-PA 468 CG4237-PA 1..468 1..468 2462 100 Plus
ArfGAP1-PB 448 CG4237-PB 1..448 1..468 2332 95.7 Plus
ArfGAP3-PE 513 CG6838-PE 16..126 9..120 271 46.9 Plus
ArfGAP3-PF 514 CG6838-PF 16..126 9..120 271 46.9 Plus
ArfGAP3-PG 549 CG6838-PG 16..126 9..120 271 46.9 Plus