Clone Sequence Records
BS12886.3prime Sequence
823 bp (738 high quality bases) assembled on 2006-10-13
> BS12886.3prime
ATGGTCTAGAAAGCTTCTAGTTCATCAGCAGATTCCAGGCGTCGTCCTCG
GCAGTGCCTTTGTTGGCGGACGAGGCCGTTGCCGTCTTGGGCTTCACACT
CTTCACGTCCAGGCTCTCGAAGCCCTCGCTCAGCTTCTGCGATGTGTCCT
GCAGCTTCATGTTGCGGCGAGCTGTCGATCCGCCGGACGAAGCGTTCTGG
TAGGAGGTCTCTGAACTCTGATAGTTCGTCGCCTCGAAGCCGGACCAGTC
AGCGTCGCGGGTTAGGCCGGCGGAGGCGGTACCGCCGCCGCTGCTGCTAC
TCAACTGATTGTGGTACGAACTCGAGCTGGTCATGTGCGACTTGCTGTTG
CCGTTGTCCTGCCAGCCGCCCCAGTCGCTGTCGCTGACGCCGCTCTGCTG
ACCCAAGCCTCCGGCCAGATTACCGCCCACGGAATTGGAACGCTGGTAGG
CGCTGCTGTCCTCGAAGTTGGGATCGTTGTATCCGCCCTGCGGCGACGAA
ATGTTGCTGCCCGCCAGATTATTCCAACCTCGTTTGCCCATATCGGTGAC
CTTGCTGGCTACATCGGTAACTCCGCATTGTACGGAATCTAGCAGAGTTC
CCTCTTTAATCTTTGTCGAGGCCAAATTGACGGTGGTGACGGCCTTCTCC
TTGGCGGTGCTGGCCAACTTGGAGGCGTTGGTGGAGAAAAGGCTCCAGCC
AGAGGCCAAAGTGGAAAGCGTCGAGTCGAAAAGCTCCTGAGATTGCGTTT
TCGGTGGTGGTTCGCGTGTGAACCCGAAACCTGCATATTTTCCGCCCTGA
CTCGGTGGCAAGTTTTCTGGCCT
BS12886.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4237-PA | 1407 | Gap69C-RA | 601..1407 | 823..17 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ArfGAP1-RA | 2085 | CG4237-RA | 969..1777 | 823..15 | 4045 | 100 | Minus |
ArfGAP1-RB | 2025 | CG4237-RB | 1179..1717 | 553..15 | 2695 | 100 | Minus |
ArfGAP1-RB | 2025 | CG4237-RB | 969..1181 | 823..611 | 1065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12415334..12415871 | 15..552 | 2690 | 100 | Plus |
3L | 28110227 | 3L | 12416275..12416479 | 611..815 | 1025 | 100 | Plus |
3L | 28110227 | 3L | 12415942..12416006 | 548..612 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:43:44 has no hits.
BS12886.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:36 Download gff for
BS12886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4237-PA | 601..1407 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:22 Download gff for
BS12886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP1-RA | 969..1777 | 15..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:52 Download gff for
BS12886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP1-RA | 969..1777 | 15..823 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:52 Download gff for
BS12886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12415334..12415869 | 15..550 | 100 | <- | Plus |
3L | 12415945..12416004 | 551..610 | 100 | <- | Plus |
3L | 12416275..12416482 | 611..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:22 Download gff for
BS12886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12408434..12408969 | 15..550 | 100 | <- | Plus |
arm_3L | 12409045..12409104 | 551..610 | 100 | <- | Plus |
arm_3L | 12409375..12409582 | 611..819 | 99 | | Plus |
BS12886.5prime Sequence
830 bp (785 high quality bases) assembled on 2006-10-13
> BS12886.5prime
GAAGTTATCAGTCGACATGGCGAGTCCCAGAACGCGACGGGTGCTCCAGG
AACTGAAACCCCAGGATGAGAACTCGAAATGCTTCGAGTGCGGTACCCAC
AATCCGCAGTGGGTGTCCGTGACCTACGGCATCTGGATCTGCCTGGAGTG
CTCCGGCAAGCATCGCAGTCTGGGCGTGCATCTGTCCTTCGTGCGCTCCG
TCACTATGGATAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGCGGGC
GGCAATCGCAATGCGCGCGAGTTTCTGGAGGATCAGGAGGACTGGAACGA
ACGGGCGCCTATCACGCAGCGTTACAACTCGAAGGCGGCTGCTTTGTACC
GCGATAAGATAGCCACCTTGGCCCAGGGCAAGAGCTGGGATCTCAAGGAG
GCGCAAGGCCGCGTGGGCAGCAACAATAGCTTCAGCTCAGGTGGCTCCAG
CAACAGCAGCTACCAGTCGCGACCCAGTGCAACAGGTTATGGCGGAAACG
GAGGCTATCAGAATGGCGGAGGCGCCGAGCCTGGAGGCTATCAGCAGTAC
CAAACGCAGGAGTTCAAGGACCAGAAGGAGGAGTTCTTCAGCCGACGCCA
AGTGGAGAATGCCTCCAGGCCAGAAAACTTGCCACCGAGTCAGGGCGGAA
AATATGCAGGTTTCGGGTTCACACGCGAACCACCACCGAAAACGCAATCT
CAGGAGCTTTTCGACTCGACGCTTTCCACTTTGGCCTCTGGCTGGAGCCT
TTTCTCCACCAACGCCTCCNAGTTGGCCAGCACCGCCAAGGAGAAGGCCG
TCACCACCGTCAATTTGGCCTCGACAAAGA
BS12886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4237-PA | 1407 | Gap69C-RA | 1..814 | 17..830 | 4051 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ArfGAP1-RA | 2085 | CG4237-RA | 361..1182 | 9..830 | 4069 | 99.6 | Plus |
ArfGAP1-RB | 2025 | CG4237-RB | 361..1181 | 9..829 | 4064 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12416540..12417092 | 624..72 | 2750 | 99.8 | Minus |
3L | 28110227 | 3L | 12416275..12416479 | 829..625 | 1014 | 99.5 | Minus |
3L | 28110227 | 3L | 12417153..12417220 | 76..9 | 310 | 97.1 | Minus |
Blast to na_te.dros performed 2015-02-10 17:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 3794..3831 | 462..499 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1589 | 417..465 | 110 | 69.4 | Plus |
BS12886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:37 Download gff for
BS12886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4237-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:00 Download gff for
BS12886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP1-RA | 355..1181 | 3..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:57 Download gff for
BS12886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP1-RA | 355..1181 | 3..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:57 Download gff for
BS12886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12416275..12416479 | 625..829 | 99 | <- | Minus |
3L | 12416540..12417087 | 77..624 | 100 | <- | Minus |
3L | 12417153..12417226 | 3..76 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:00 Download gff for
BS12886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12409375..12409579 | 625..829 | 99 | <- | Minus |
arm_3L | 12409640..12410187 | 77..624 | 100 | <- | Minus |
arm_3L | 12410253..12410326 | 3..76 | 93 | | Minus |
BS12886.complete Sequence
1439 bp assembled on 2006-11-01
GenBank Submission: FJ637326
> BS12886.complete
GAAGTTATCAGTCGACATGGCGAGTCCCAGAACGCGACGGGTGCTCCAGG
AACTGAAACCCCAGGATGAGAACTCGAAATGCTTCGAGTGCGGTACCCAC
AATCCGCAGTGGGTGTCCGTGACCTACGGCATCTGGATCTGCCTGGAGTG
CTCCGGCAAGCATCGCAGTCTGGGCGTGCATCTGTCCTTCGTGCGCTCCG
TCACTATGGATAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGCGGGC
GGCAATCGCAATGCGCGCGAGTTTCTGGAGGATCAGGAGGACTGGAACGA
ACGGGCGCCTATCACGCAGCGTTACAACTCGAAGGCGGCTGCTTTGTACC
GCGATAAGATAGCCACCTTGGCCCAGGGCAAGAGCTGGGATCTCAAGGAG
GCGCAAGGCCGCGTGGGCAGCAACAATAGCTTCAGCTCAGGTGGCTCCAG
CAACAGCAGCTACCAGTCGCGACCCAGTGCAACAGGTTATGGCGGAAACG
GAGGCTATCAGAATGGCGGAGGCGCCGAGCCTGGAGGCTATCAGCAGTAC
CAAACGCAGGAGTTCAAGGACCAGAAGGAGGAGTTCTTCAGCCGACGCCA
AGTGGAGAATGCCTCCAGGCCAGAAAACTTGCCACCGAGTCAGGGCGGAA
AATATGCAGGTTTCGGGTTCACACGCGAACCACCACCGAAAACGCAATCT
CAGGAGCTTTTCGACTCGACGCTTTCCACTTTGGCCTCTGGCTGGAGCCT
TTTCTCCACCAACGCCTCCAAGTTGGCCAGCACCGCCAAGGAGAAGGCCG
TCACCACCGTCAATTTGGCCTCGACAAAGATTAAAGAGGGAACTCTGCTA
GATTCCGTACAATGCGGAGTTACCGATGTAGCCAGCAAGGTCACCGATAT
GGGCAAACGAGGTTGGAATAATCTGGCGGGCAGCAACATTTCGTCGCCGC
AGGGCGGATACAACGATCCCAACTTCGAGGACAGCAGCGCCTACCAGCGT
TCCAATTCCGTGGGCGGTAATCTGGCCGGAGGCTTGGGTCAGCAGAGCGG
CGTCAGCGACAGCGACTGGGGCGGCTGGCAGGACAACGGCAACAGCAAGT
CGCACATGACCAGCTCGAGTTCGTACCACAATCAGTTGAGTAGCAGCAGC
GGCGGCGGTACCGCCTCCGCCGGCCTAACCCGCGACGCTGACTGGTCCGG
CTTCGAGGCGACGAACTATCAGAGTTCAGAGACCTCCTACCAGAACGCTT
CGTCCGGCGGATCGACAGCTCGCCGCAACATGAAGCTGCAGGACACATCG
CAGAAGCTGAGCGAGGGCTTCGAGAGCCTGGACGTGAAGAGTGTGAAGCC
CAAGACGGCAACGGCCTCGTCCGCCAACAAAGGCACTGCCGAGGACGACG
CCTGGAATCTGCTGATGAACTAGAAGCTTTCTAGACCAT
BS12886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ArfGAP1-RA | 1407 | CG4237-PA | 1..1407 | 17..1423 | 7035 | 100 | Plus |
ArfGAP1-RB | 1347 | CG4237-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
ArfGAP1-RB | 1347 | CG4237-PB | 811..1347 | 887..1423 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ArfGAP1-RA | 2085 | CG4237-RA | 361..1777 | 9..1425 | 7055 | 99.9 | Plus |
ArfGAP1-RB | 2025 | CG4237-RB | 361..1181 | 9..829 | 4075 | 99.8 | Plus |
ArfGAP1-RB | 2025 | CG4237-RB | 1179..1717 | 887..1425 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12416540..12417092 | 624..72 | 2750 | 99.8 | Minus |
3L | 28110227 | 3L | 12415334..12415871 | 1425..888 | 2690 | 100 | Minus |
3L | 28110227 | 3L | 12416275..12416479 | 829..625 | 1025 | 100 | Minus |
3L | 28110227 | 3L | 12415942..12416006 | 892..828 | 325 | 100 | Minus |
3L | 28110227 | 3L | 12417153..12417220 | 76..9 | 310 | 97.1 | Minus |
Blast to na_te.dros performed 2014-11-27 08:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 3794..3831 | 462..499 | 118 | 78.9 | Plus |
BS12886.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:42 Download gff for
BS12886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gap69C-RA | 1..1407 | 17..1423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:50 Download gff for
BS12886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gap69C-RA | 478..1900 | 3..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:39 Download gff for
BS12886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP1-RA | 369..1775 | 17..1423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:43 Download gff for
BS12886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gap69C-RA | 478..1900 | 3..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:17 Download gff for
BS12886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP1-RA | 369..1775 | 17..1423 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:17 Download gff for
BS12886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12415336..12415869 | 890..1423 | 100 | <- | Minus |
3L | 12415945..12416004 | 830..889 | 100 | <- | Minus |
3L | 12416275..12416479 | 625..829 | 100 | <- | Minus |
3L | 12416540..12417087 | 77..624 | 100 | <- | Minus |
3L | 12417153..12417212 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:39 Download gff for
BS12886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12408436..12408969 | 890..1423 | 100 | <- | Minus |
arm_3L | 12409045..12409104 | 830..889 | 100 | <- | Minus |
arm_3L | 12409375..12409579 | 625..829 | 100 | <- | Minus |
arm_3L | 12409640..12410187 | 77..624 | 100 | <- | Minus |
arm_3L | 12410253..12410312 | 17..76 | 100 | | Minus |
BS12886.pep Sequence
Translation from 16 to 1422
> BS12886.pep
MASPRTRRVLQELKPQDENSKCFECGTHNPQWVSVTYGIWICLECSGKHR
SLGVHLSFVRSVTMDKWKDIELEKMKAGGNRNAREFLEDQEDWNERAPIT
QRYNSKAAALYRDKIATLAQGKSWDLKEAQGRVGSNNSFSSGGSSNSSYQ
SRPSATGYGGNGGYQNGGGAEPGGYQQYQTQEFKDQKEEFFSRRQVENAS
RPENLPPSQGGKYAGFGFTREPPPKTQSQELFDSTLSTLASGWSLFSTNA
SKLASTAKEKAVTTVNLASTKIKEGTLLDSVQCGVTDVASKVTDMGKRGW
NNLAGSNISSPQGGYNDPNFEDSSAYQRSNSVGGNLAGGLGQQSGVSDSD
WGGWQDNGNSKSHMTSSSSYHNQLSSSSGGGTASAGLTRDADWSGFEATN
YQSSETSYQNASSGGSTARRNMKLQDTSQKLSEGFESLDVKSVKPKTATA
SSANKGTAEDDAWNLLMN*
BS12886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ArfGAP1-PA | 468 | CG4237-PA | 1..468 | 1..468 | 2462 | 100 | Plus |
ArfGAP1-PB | 448 | CG4237-PB | 1..448 | 1..468 | 2332 | 95.7 | Plus |
ArfGAP3-PE | 513 | CG6838-PE | 16..126 | 9..120 | 271 | 46.9 | Plus |
ArfGAP3-PF | 514 | CG6838-PF | 16..126 | 9..120 | 271 | 46.9 | Plus |
ArfGAP3-PG | 549 | CG6838-PG | 16..126 | 9..120 | 271 | 46.9 | Plus |