Clone BS12891 Report

Search the DGRC for BS12891

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL38-RA
Protein status:BS12891.pep: full length peptide match
Sequenced Size:1283

Clone Sequence Records

BS12891.complete Sequence

1283 bp assembled on 2009-12-07

GenBank Submission: KX806522

> BS12891.complete
GAAGTTATCAGTCGACATGTCTTTCAGTAATTTGTTAATGAAAAGTGGCC
TAACTGTGGCCGTGCGTGATGCGCAGGCCGCCGTCCTGATGACTGCCACA
CGGCAAGGACACACCATACGCGGCAAGCCGCCCGGCGTGGCCCGTTCTCT
GGAGCAGCGGATTCGTGAGGAGAACGTTGAGGATCCGGAGGTGGTGGCCC
GCATCAACATTGGCTTCCCGCAGCTGAAGGAGTCGCGCTCGGCGCAGCTA
AAGAAGCGACTGGAGCACCTGAAGTCCCAGCGCAGTGACAAGCAGCTGGA
GCAGCTGGCGCGGAGCAACAAGCTGATCATCGATTTGGACAAGGTGCAGC
GCACCTATGTGAAGACCACGGGCCAGCATGATCTTCGCCTGGTGGCGGAC
CACTACGGCATCTTCGAGCACCTCTTTGGCAGCGCCTACTTTGTGCCCCG
CGTGCCGCTCAACATAAGCTACCAACTGGACGGCGATAGCCTGGCACCCG
TCTACAATGGCAACGTTATCAAGCCGACGGAGGCAGCCAAGGCGCCTCAG
ATCGATTTCGATGGCCTAGTGGATCCCATTACGGGACAAGCCGCCGGCCA
GGACACTTACTGGACCCTGGTGGCCAGCAATCCCGATGCGCACTACACAA
ATGGAACTGCCGAGTGTCTGCATTGGTTCATTGCCAACATACCCAACGGC
AAGGTGAGCGAGGGTCAGGTTCTCGCCGAGTATCTACCGCCGTTCCCGCC
GCGCGGCGTTGGTTACCAACGCATGGTCTTTGTGCTCTACAAACAGCAGG
CGCGCCTTGATCTCGGCTCTTATCAGTTGGCTGCTGCCGACTACGGTAAT
CTGGAGAAGCGCACCTTCAGCACCCTGGACTTCTATCGTCAGCACCAGGA
GCAACTGACGCCGGCTGGCCTGGCCTTCTATCAGACCAACTGGGACGAGT
CATTGACGCAGTTCTACCACGATGTCTTGAAGATCAAAGAGCCCGTTTAT
GAGTACGACTTCCCCAAGCCGTACCTGACCGACCAGAAGTTCTTCCCGCT
GAAGCAGCCCTTCAATTTGTACATGGACAAGCACCGCGATCAGAAGCAGG
TGAACAAGGAGTATCTGGAGCGCAAGCTGGCCAAAACGCATCCATTCGAG
GGGCCAAAGAAGCCGCTGCGCTACCCCAATGCCCATCCCATACGCGATGT
GCCCTCGTGGCTGCGCACTGAGATTCGGAAGGAGCGTCTGGGCACTGGTC
GCGTGCAGGACTACTAGAAGCTTTCTAGACCAT

BS12891.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-RA 1251 CG15871-PA 1..1251 17..1267 6255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-RA 1399 CG15871-RA 51..1304 16..1269 6270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14226784..14227141 324..681 1790 100 Plus
X 23542271 X 14227197..14227495 682..980 1495 100 Plus
X 23542271 X 14227566..14227854 981..1269 1445 100 Plus
X 23542271 X 14226561..14226717 167..323 785 100 Plus
X 23542271 X 14226339..14226490 16..167 760 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:20:40 has no hits.

BS12891.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:35 Download gff for BS12891.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 50..1300 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:55 Download gff for BS12891.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 52..1302 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:14 Download gff for BS12891.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 50..1300 17..1267 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:21 Download gff for BS12891.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 52..1302 17..1267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:21 Download gff for BS12891.complete
Subject Subject Range Query Range Percent Splice Strand
X 14226340..14226490 17..167 100 -> Plus
X 14226562..14226717 168..323 100 -> Plus
X 14226784..14227141 324..681 100 -> Plus
X 14227197..14227495 682..980 100 -> Plus
X 14227566..14227852 981..1267 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:55 Download gff for BS12891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14120373..14120523 17..167 100 -> Plus
arm_X 14120595..14120750 168..323 100 -> Plus
arm_X 14120817..14121174 324..681 100 -> Plus
arm_X 14121230..14121528 682..980 100 -> Plus
arm_X 14121599..14121885 981..1267 100   Plus

BS12891.5prime Sequence

705 bp (503 high quality bases) assembled on 2006-10-13

> BS12891.5prime
GAAGTTATCAGTCGACATGTCTTTCAGTAATTTGTTAATGAAAAGTGGCC
TAACTGTGGCCGTGCGTGATGCGCAGGCCGCCGTCCTGATGACTGCCACA
CGGCAAGGACACACCATACGCGGCAAGCCGCCCGGCGTGGCCCGTTCTCT
GGAGCAGCGGATTCGTGAGGAGAACGTTGAGGATCCGGAGGTGGTGGCCC
GCATCAACATTGGCTTCCCGCAGCTGAAGGAGTCGCGCTCGGCGCAGCTA
AAGAAGCGACTGGAGCACCTGAAGTCCCAGCGCAGTGACAAGCAGCTGGA
GCAGCTGGCGCGGAGCAACAAGCTGATCATCGATTTGGACAAGGTGCAGC
GCACCTATGTGAAGACCACGGGCCAGCATGATCTTCGCCTGGTGGCGGAC
CACTACGGCATCTTCGAGCACCTCTTTGGCAGCGCCTACTTTGTGCCCCG
CGTGCCGCTCAACATAAGCTACCAACTGGACGGCGATAGCCTGGCACCCG
TCTACAATGGCAACGTTATCAAGCCGACGGAGGCAGCCAAGGCGCCTCAG
ATCGATTTCGATGGCCTAGTGGATCCCATTACGGGACAAGCCGCCGGCCA
AGACACTTACTGGACCCTGGTGGCCAGCAATCCCGATGCGCACTAACAAA
TGGAACTGCCGAGTGTCTGCATTGGTTCTTTGCCAACATACCCAACGGCA
AGGTG

BS12891.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15871-PA 1251 mRpL38-RA 1..690 17..705 3360 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-RA 1399 CG15871-RA 51..741 16..705 3400 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14226784..14227139 324..678 1715 99.4 Plus
X 23542271 X 14226561..14226717 167..323 785 100 Plus
X 23542271 X 14226339..14226490 16..167 760 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:49:44 has no hits.

BS12891.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:40 Download gff for BS12891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15871-PA 1..690 17..705 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:33:30 Download gff for BS12891.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 48..741 9..705 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:21 Download gff for BS12891.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 48..741 9..705 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:21 Download gff for BS12891.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14226336..14226490 9..167 97 -> Plus
X 14226562..14226717 168..323 100 -> Plus
X 14226784..14227141 324..680 99 -> Plus
X 14227197..14227221 681..705 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:33:30 Download gff for BS12891.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14120369..14120523 9..167 97 -> Plus
arm_X 14120595..14120750 168..323 100 -> Plus
arm_X 14120817..14121174 324..680 99 -> Plus
arm_X 14121230..14121254 681..705 100   Plus

BS12891.3prime Sequence

638 bp (521 high quality bases) assembled on 2006-10-13

> BS12891.3prime
ATGGTCTAGAAAGCTTCTAGTAGTCCTGCACGCGACCAGTGCCCAGACGC
TCCTTCCGAATCTCAGTGCGCAGCCACGAGGGCACATCGCGTATGGGATG
GGCATTGGGGTAGCGCAGCGGCTTCTTTGGCCCCTCGAATGGATGCGTTT
TGGCCAGCTTGCGCTCCAGATACTCCTTGTTCACCTGCTTCTGATCGCGG
TGCTTGTCCATGTACAAATTGAAGGGCTGCTTCAGCGGGAAGAACTTCTG
GTCGGTCAGGTACGGCTTGGGGAAGTCGTACTCATAAACGGGCTCTTTGA
TCTTCAAGACATCGTGGTAGAACTGCGTCAATGACTCGTCCCAGTTGGTC
TGATAGAAGGCCAGGCCAGCCGGCGTCAGTTGCTCCTGGTGCTGACGATA
GAAGTCCAGGGTGCTGAAGGTGCGCTTCTCCAGATTACCGTAGTCGGCAG
CAGCCAACTGATAAGAGCCGAGATCAAGGCGCGCCTGCTGTTTGTAGAGC
ACAAAGACCATGCGTTGGTAACCAACGCCGCGCGGTGGGAACGGCGGTAG
ATACTCGGCGAGAACCTGACCCTCGCTCACCTTGCCGTTGGGTATGTTGG
CAATGAACCAATGCAGACACTCTCGAGTTCCATTTGTG

BS12891.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG15871-PA 1251 mRpL38-RA 646..1251 622..17 3005 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-RA 1399 CG15871-RA 681..1304 638..15 3060 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14227197..14227495 602..304 1480 99.7 Minus
X 23542271 X 14227566..14227854 303..15 1445 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:55:58 has no hits.

BS12891.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:40 Download gff for BS12891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15871-PA 630..1251 17..638 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:01 Download gff for BS12891.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 681..1309 8..638 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:24 Download gff for BS12891.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 681..1309 8..638 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:24 Download gff for BS12891.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14227566..14227859 8..303 98   Minus
X 14227197..14227495 304..602 99 -> Minus
X 14227106..14227141 603..638 91 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:01 Download gff for BS12891.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14121139..14121174 603..638 91 -> Minus
arm_X 14121230..14121528 304..602 99 -> Minus
arm_X 14121599..14121892 8..303 98   Minus

BS12891.pep Sequence

Translation from 16 to 1266

> BS12891.pep
MSFSNLLMKSGLTVAVRDAQAAVLMTATRQGHTIRGKPPGVARSLEQRIR
EENVEDPEVVARINIGFPQLKESRSAQLKKRLEHLKSQRSDKQLEQLARS
NKLIIDLDKVQRTYVKTTGQHDLRLVADHYGIFEHLFGSAYFVPRVPLNI
SYQLDGDSLAPVYNGNVIKPTEAAKAPQIDFDGLVDPITGQAAGQDTYWT
LVASNPDAHYTNGTAECLHWFIANIPNGKVSEGQVLAEYLPPFPPRGVGY
QRMVFVLYKQQARLDLGSYQLAAADYGNLEKRTFSTLDFYRQHQEQLTPA
GLAFYQTNWDESLTQFYHDVLKIKEPVYEYDFPKPYLTDQKFFPLKQPFN
LYMDKHRDQKQVNKEYLERKLAKTHPFEGPKKPLRYPNAHPIRDVPSWLR
TEIRKERLGTGRVQDY*

BS12891.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-PA 416 CG15871-PA 1..416 1..416 2195 100 Plus
CG17919-PA 202 CG17919-PA 12..196 125..317 177 27.3 Plus
a5-PA 210 CG5430-PA 44..210 144..325 176 25 Plus
CG10298-PA 187 CG10298-PA 39..180 165..317 172 29 Plus
Pebp1-PA 176 CG18594-PA 32..166 165..311 159 28.2 Plus