Clone Sequence Records
BS12891.complete Sequence
1283 bp assembled on 2009-12-07
GenBank Submission: KX806522
> BS12891.complete
GAAGTTATCAGTCGACATGTCTTTCAGTAATTTGTTAATGAAAAGTGGCC
TAACTGTGGCCGTGCGTGATGCGCAGGCCGCCGTCCTGATGACTGCCACA
CGGCAAGGACACACCATACGCGGCAAGCCGCCCGGCGTGGCCCGTTCTCT
GGAGCAGCGGATTCGTGAGGAGAACGTTGAGGATCCGGAGGTGGTGGCCC
GCATCAACATTGGCTTCCCGCAGCTGAAGGAGTCGCGCTCGGCGCAGCTA
AAGAAGCGACTGGAGCACCTGAAGTCCCAGCGCAGTGACAAGCAGCTGGA
GCAGCTGGCGCGGAGCAACAAGCTGATCATCGATTTGGACAAGGTGCAGC
GCACCTATGTGAAGACCACGGGCCAGCATGATCTTCGCCTGGTGGCGGAC
CACTACGGCATCTTCGAGCACCTCTTTGGCAGCGCCTACTTTGTGCCCCG
CGTGCCGCTCAACATAAGCTACCAACTGGACGGCGATAGCCTGGCACCCG
TCTACAATGGCAACGTTATCAAGCCGACGGAGGCAGCCAAGGCGCCTCAG
ATCGATTTCGATGGCCTAGTGGATCCCATTACGGGACAAGCCGCCGGCCA
GGACACTTACTGGACCCTGGTGGCCAGCAATCCCGATGCGCACTACACAA
ATGGAACTGCCGAGTGTCTGCATTGGTTCATTGCCAACATACCCAACGGC
AAGGTGAGCGAGGGTCAGGTTCTCGCCGAGTATCTACCGCCGTTCCCGCC
GCGCGGCGTTGGTTACCAACGCATGGTCTTTGTGCTCTACAAACAGCAGG
CGCGCCTTGATCTCGGCTCTTATCAGTTGGCTGCTGCCGACTACGGTAAT
CTGGAGAAGCGCACCTTCAGCACCCTGGACTTCTATCGTCAGCACCAGGA
GCAACTGACGCCGGCTGGCCTGGCCTTCTATCAGACCAACTGGGACGAGT
CATTGACGCAGTTCTACCACGATGTCTTGAAGATCAAAGAGCCCGTTTAT
GAGTACGACTTCCCCAAGCCGTACCTGACCGACCAGAAGTTCTTCCCGCT
GAAGCAGCCCTTCAATTTGTACATGGACAAGCACCGCGATCAGAAGCAGG
TGAACAAGGAGTATCTGGAGCGCAAGCTGGCCAAAACGCATCCATTCGAG
GGGCCAAAGAAGCCGCTGCGCTACCCCAATGCCCATCCCATACGCGATGT
GCCCTCGTGGCTGCGCACTGAGATTCGGAAGGAGCGTCTGGGCACTGGTC
GCGTGCAGGACTACTAGAAGCTTTCTAGACCAT
BS12891.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL38-RA | 1251 | CG15871-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL38-RA | 1399 | CG15871-RA | 51..1304 | 16..1269 | 6270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14226784..14227141 | 324..681 | 1790 | 100 | Plus |
X | 23542271 | X | 14227197..14227495 | 682..980 | 1495 | 100 | Plus |
X | 23542271 | X | 14227566..14227854 | 981..1269 | 1445 | 100 | Plus |
X | 23542271 | X | 14226561..14226717 | 167..323 | 785 | 100 | Plus |
X | 23542271 | X | 14226339..14226490 | 16..167 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:20:40 has no hits.
BS12891.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:35 Download gff for
BS12891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 50..1300 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:55 Download gff for
BS12891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 52..1302 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:14 Download gff for
BS12891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 50..1300 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:21 Download gff for
BS12891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 52..1302 | 17..1267 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:21 Download gff for
BS12891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14226340..14226490 | 17..167 | 100 | -> | Plus |
X | 14226562..14226717 | 168..323 | 100 | -> | Plus |
X | 14226784..14227141 | 324..681 | 100 | -> | Plus |
X | 14227197..14227495 | 682..980 | 100 | -> | Plus |
X | 14227566..14227852 | 981..1267 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:55 Download gff for
BS12891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14120373..14120523 | 17..167 | 100 | -> | Plus |
arm_X | 14120595..14120750 | 168..323 | 100 | -> | Plus |
arm_X | 14120817..14121174 | 324..681 | 100 | -> | Plus |
arm_X | 14121230..14121528 | 682..980 | 100 | -> | Plus |
arm_X | 14121599..14121885 | 981..1267 | 100 | | Plus |
BS12891.5prime Sequence
705 bp (503 high quality bases) assembled on 2006-10-13
> BS12891.5prime
GAAGTTATCAGTCGACATGTCTTTCAGTAATTTGTTAATGAAAAGTGGCC
TAACTGTGGCCGTGCGTGATGCGCAGGCCGCCGTCCTGATGACTGCCACA
CGGCAAGGACACACCATACGCGGCAAGCCGCCCGGCGTGGCCCGTTCTCT
GGAGCAGCGGATTCGTGAGGAGAACGTTGAGGATCCGGAGGTGGTGGCCC
GCATCAACATTGGCTTCCCGCAGCTGAAGGAGTCGCGCTCGGCGCAGCTA
AAGAAGCGACTGGAGCACCTGAAGTCCCAGCGCAGTGACAAGCAGCTGGA
GCAGCTGGCGCGGAGCAACAAGCTGATCATCGATTTGGACAAGGTGCAGC
GCACCTATGTGAAGACCACGGGCCAGCATGATCTTCGCCTGGTGGCGGAC
CACTACGGCATCTTCGAGCACCTCTTTGGCAGCGCCTACTTTGTGCCCCG
CGTGCCGCTCAACATAAGCTACCAACTGGACGGCGATAGCCTGGCACCCG
TCTACAATGGCAACGTTATCAAGCCGACGGAGGCAGCCAAGGCGCCTCAG
ATCGATTTCGATGGCCTAGTGGATCCCATTACGGGACAAGCCGCCGGCCA
AGACACTTACTGGACCCTGGTGGCCAGCAATCCCGATGCGCACTAACAAA
TGGAACTGCCGAGTGTCTGCATTGGTTCTTTGCCAACATACCCAACGGCA
AGGTG
BS12891.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15871-PA | 1251 | mRpL38-RA | 1..690 | 17..705 | 3360 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL38-RA | 1399 | CG15871-RA | 51..741 | 16..705 | 3400 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14226784..14227139 | 324..678 | 1715 | 99.4 | Plus |
X | 23542271 | X | 14226561..14226717 | 167..323 | 785 | 100 | Plus |
X | 23542271 | X | 14226339..14226490 | 16..167 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:49:44 has no hits.
BS12891.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:40 Download gff for
BS12891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15871-PA | 1..690 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:33:30 Download gff for
BS12891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 48..741 | 9..705 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:21 Download gff for
BS12891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 48..741 | 9..705 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:21 Download gff for
BS12891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14226336..14226490 | 9..167 | 97 | -> | Plus |
X | 14226562..14226717 | 168..323 | 100 | -> | Plus |
X | 14226784..14227141 | 324..680 | 99 | -> | Plus |
X | 14227197..14227221 | 681..705 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:33:30 Download gff for
BS12891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14120369..14120523 | 9..167 | 97 | -> | Plus |
arm_X | 14120595..14120750 | 168..323 | 100 | -> | Plus |
arm_X | 14120817..14121174 | 324..680 | 99 | -> | Plus |
arm_X | 14121230..14121254 | 681..705 | 100 | | Plus |
BS12891.3prime Sequence
638 bp (521 high quality bases) assembled on 2006-10-13
> BS12891.3prime
ATGGTCTAGAAAGCTTCTAGTAGTCCTGCACGCGACCAGTGCCCAGACGC
TCCTTCCGAATCTCAGTGCGCAGCCACGAGGGCACATCGCGTATGGGATG
GGCATTGGGGTAGCGCAGCGGCTTCTTTGGCCCCTCGAATGGATGCGTTT
TGGCCAGCTTGCGCTCCAGATACTCCTTGTTCACCTGCTTCTGATCGCGG
TGCTTGTCCATGTACAAATTGAAGGGCTGCTTCAGCGGGAAGAACTTCTG
GTCGGTCAGGTACGGCTTGGGGAAGTCGTACTCATAAACGGGCTCTTTGA
TCTTCAAGACATCGTGGTAGAACTGCGTCAATGACTCGTCCCAGTTGGTC
TGATAGAAGGCCAGGCCAGCCGGCGTCAGTTGCTCCTGGTGCTGACGATA
GAAGTCCAGGGTGCTGAAGGTGCGCTTCTCCAGATTACCGTAGTCGGCAG
CAGCCAACTGATAAGAGCCGAGATCAAGGCGCGCCTGCTGTTTGTAGAGC
ACAAAGACCATGCGTTGGTAACCAACGCCGCGCGGTGGGAACGGCGGTAG
ATACTCGGCGAGAACCTGACCCTCGCTCACCTTGCCGTTGGGTATGTTGG
CAATGAACCAATGCAGACACTCTCGAGTTCCATTTGTG
BS12891.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15871-PA | 1251 | mRpL38-RA | 646..1251 | 622..17 | 3005 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL38-RA | 1399 | CG15871-RA | 681..1304 | 638..15 | 3060 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14227197..14227495 | 602..304 | 1480 | 99.7 | Minus |
X | 23542271 | X | 14227566..14227854 | 303..15 | 1445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:55:58 has no hits.
BS12891.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:40 Download gff for
BS12891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15871-PA | 630..1251 | 17..638 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:01 Download gff for
BS12891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 681..1309 | 8..638 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:24 Download gff for
BS12891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 681..1309 | 8..638 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:24 Download gff for
BS12891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14227566..14227859 | 8..303 | 98 | | Minus |
X | 14227197..14227495 | 304..602 | 99 | -> | Minus |
X | 14227106..14227141 | 603..638 | 91 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:01 Download gff for
BS12891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14121139..14121174 | 603..638 | 91 | -> | Minus |
arm_X | 14121230..14121528 | 304..602 | 99 | -> | Minus |
arm_X | 14121599..14121892 | 8..303 | 98 | | Minus |
BS12891.pep Sequence
Translation from 16 to 1266
> BS12891.pep
MSFSNLLMKSGLTVAVRDAQAAVLMTATRQGHTIRGKPPGVARSLEQRIR
EENVEDPEVVARINIGFPQLKESRSAQLKKRLEHLKSQRSDKQLEQLARS
NKLIIDLDKVQRTYVKTTGQHDLRLVADHYGIFEHLFGSAYFVPRVPLNI
SYQLDGDSLAPVYNGNVIKPTEAAKAPQIDFDGLVDPITGQAAGQDTYWT
LVASNPDAHYTNGTAECLHWFIANIPNGKVSEGQVLAEYLPPFPPRGVGY
QRMVFVLYKQQARLDLGSYQLAAADYGNLEKRTFSTLDFYRQHQEQLTPA
GLAFYQTNWDESLTQFYHDVLKIKEPVYEYDFPKPYLTDQKFFPLKQPFN
LYMDKHRDQKQVNKEYLERKLAKTHPFEGPKKPLRYPNAHPIRDVPSWLR
TEIRKERLGTGRVQDY*
BS12891.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL38-PA | 416 | CG15871-PA | 1..416 | 1..416 | 2195 | 100 | Plus |
CG17919-PA | 202 | CG17919-PA | 12..196 | 125..317 | 177 | 27.3 | Plus |
a5-PA | 210 | CG5430-PA | 44..210 | 144..325 | 176 | 25 | Plus |
CG10298-PA | 187 | CG10298-PA | 39..180 | 165..317 | 172 | 29 | Plus |
Pebp1-PA | 176 | CG18594-PA | 32..166 | 165..311 | 159 | 28.2 | Plus |