Clone Sequence Records
BS12892.3prime Sequence
659 bp (635 high quality bases) assembled on 2006-10-13
> BS12892.3prime
ATGGTCTAGAAAGCTTTCATTGGTTTTGGAAGGCGTCCAGGACCTTGGTG
AGCGCACCTTGCTTCACGCCCTCATCGGCACACGGATTGATGTCCCAGAA
GGCTCCATGGCATCCGAACTCCTCGAAGCAGTTGTACCGCACCTTCTTGC
TCTCGCCCGTGCAGCAGTTGACGATCGCCCACACACACCTGCTGACCTTG
GGCTCACTATCGACCCCCCCTGTTTGTGGGACAGGCCTTGCGTTGGGCCG
CATGGTGGGCAGTCCCACAACGGGGGAGCGGGTGGGGGGCGGCCGGCGTA
TGCTGTTCGACGGACGCCACGATGGTGCCGAGGTCACAAAGTCACTATCA
TTGATTTGAAAGATTGGCCTGGCAGTAGTCGTAGACGAACGGTTGTAGAT
CGAGAAATCCGCATCCGCTTGATTTGAATTGTGTATTAAATCGAATTCTC
CTCTAGAATCGACCGAGTCTGGCGTTGGGATATTCTCTTGGCCCTGATTC
CTACGATTCGGAGGCCCCACCAGATGGGGTTTCTTACCCTTCACTGAAAT
GCGAAAATGCGTATAAGTTAAGGGAGACACAAATTTTATTTCCGGAGTGC
CATAGTAGTATTGCAGGACTTTCTCAAAGCTTACAGGAACCTGTCGTCGC
TGGCGACTG
BS12892.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5630-PA | 1134 | CG5630-RA | 492..1134 | 659..17 | 3190 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hdly-RC | 2132 | CG5630-RC | 627..1269 | 659..17 | 3200 | 99.8 | Minus |
hdly-RA | 1386 | CG5630-RA | 627..1269 | 659..17 | 3200 | 99.8 | Minus |
hdly-RB | 1685 | CG5630-RB | 627..1228 | 659..58 | 2995 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20927187..20927507 | 337..17 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 20926757..20926977 | 557..337 | 1105 | 100 | Minus |
3R | 32079331 | 3R | 20926589..20926690 | 659..558 | 495 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:10:21 has no hits.
BS12892.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:41 Download gff for
BS12892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5630-PA | 492..1134 | 17..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:26 Download gff for
BS12892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5630-RA | 627..1274 | 10..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:05 Download gff for
BS12892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hdly-RA | 627..1274 | 10..659 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:05 Download gff for
BS12892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20926589..20926690 | 558..659 | 99 | -> | Minus |
3R | 20926757..20926977 | 337..557 | 100 | -> | Minus |
3R | 20927188..20927512 | 10..336 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:26 Download gff for
BS12892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16752311..16752412 | 558..659 | 99 | -> | Minus |
arm_3R | 16752479..16752699 | 337..557 | 100 | -> | Minus |
arm_3R | 16752910..16753234 | 10..336 | 99 | | Minus |
BS12892.5prime Sequence
832 bp (703 high quality bases) assembled on 2006-10-13
> BS12892.5prime
GAAGTTATCAGTCGACATGAATCGAACTTCGCTGTCCAGTGGCAGCACCA
GCCGCAGACTTCCGGCTCTCTTGTTTGTCCTGCTGCTCTGCCTGGTGGCC
AGGACCAACGGTCGTCCTTCGCAAGAGGACGAGAGCGACTTGGCCATCAT
TCCGCCGGATGCCGACAATGTGGAGATCCATAAGGTTAAAATAGTGAACG
GTGTCATGCAAGAAGATCATCCGGTTATCATGTACAAGGAGGACTTCGTC
AGCGAGGATTATGATCCAACAAAAAGCGAAACAAATCCTAGTCACCACAA
GAAGCATAAGCGGACGCGGCTCCATCATGCAAAGCAAGTAACTGGAACAG
AAAAGAAGGAGGACCAGATCCTTTTCGATATTCTGCCCGACAAGCCGATC
GTCCTGGAAGAGGACCTCAAGGCTCTCCCACACAGCAAAGTTGGGGCTGC
CCAACTGGCGGAACCCATCAAGGAAGAGTGGCTGGCTAAGCATCCCAAGA
AGTACCACAGTCGCCAGCGACGACAGGCTCCTGTAAGCTTTGAGAAAGTC
CTGCAATACTACTATGGCACTCCGGAAATAAAATTTGTGTCTCCCTTAAC
TTATACGCATTTTCGCATTTCAGTGAAGGGTAAGAAACCCCATCTGGTGG
GGCCTCCGAATCGTAGGAATCAGGGCCAAGAGAATATCCCAACGCCAGAC
TCGGTCGATTCTAGAAGAGAATTCGATTTAATACACAATTCAAATCAAGC
GGATGCGGATTTCTCGATCTACAACCGTTCGTCTACGACTACTGCCAGGC
CAATCTTTCAAATCAATGATAGTGACTTTGTG
BS12892.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5630-PA | 1134 | CG5630-RA | 1..816 | 17..832 | 4055 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hdly-RC | 2132 | CG5630-RC | 136..951 | 17..832 | 4065 | 99.9 | Plus |
hdly-RB | 1685 | CG5630-RB | 136..951 | 17..832 | 4065 | 99.9 | Plus |
hdly-RA | 1386 | CG5630-RA | 136..951 | 17..832 | 4065 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20926344..20926690 | 263..609 | 1735 | 100 | Plus |
3R | 32079331 | 3R | 20926757..20926977 | 610..830 | 1090 | 99.5 | Plus |
3R | 32079331 | 3R | 20925944..20926102 | 17..175 | 795 | 100 | Plus |
3R | 32079331 | 3R | 20926163..20926252 | 174..263 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:18:47 has no hits.
BS12892.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:41 Download gff for
BS12892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5630-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:36 Download gff for
BS12892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5630-RA | 131..951 | 10..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:43 Download gff for
BS12892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hdly-RA | 131..951 | 10..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:43 Download gff for
BS12892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20925939..20926102 | 10..175 | 98 | -> | Plus |
3R | 20926165..20926252 | 176..263 | 100 | -> | Plus |
3R | 20926345..20926690 | 264..609 | 100 | -> | Plus |
3R | 20926757..20926978 | 610..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:36 Download gff for
BS12892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16751661..16751824 | 10..175 | 98 | -> | Plus |
arm_3R | 16751887..16751974 | 176..263 | 100 | -> | Plus |
arm_3R | 16752067..16752412 | 264..609 | 100 | -> | Plus |
arm_3R | 16752479..16752700 | 610..832 | 99 | | Plus |
BS12892.complete Sequence
1166 bp assembled on 2006-11-01
GenBank Submission: FJ637327
> BS12892.complete
GAAGTTATCAGTCGACATGAATCGAACTTCGCTGTCCAGTGGCAGCACCA
GCCGCAGACTTCCGGCTCTCTTGTTTGTCCTGCTGCTCTGCCTGGTGGCC
AGGACCAACGGTCGTCCTTCGCAAGAGGACGAGAGCGACTTGGCCATCAT
TCCGCCGGATGCCGACAATGTGGAGATCCATAAGGTTAAAATAGTGAACG
GTGTCATGCAAGAAGATCATCCGGTTATCATGTACAAGGAGGACTTCGTC
AGCGAGGATTATGATCCAACAAAAAGCGAAACAAATCCTAGTCACCACAA
GAAGCATAAGCGGACGCGGCTCCATCATGCAAAGCAAGTAACTGGAACAG
AAAAGAAGGAGGACCAGATCCTTTTCGATATTCTGCCCGACAAGCCGATC
GTCCTGGAAGAGGACCTCAAGGCTCTCCCACACAGCAAAGTTGGGGCTGC
CCAACTGGCGGAACCCATCAAGGAAGAGTGGCTGGCTAAGCATCCCAAGA
AGTACCACAGTCGCCAGCGACGACAGGCTCCTGTAAGCTTTGAGAAAGTC
CTGCAATACTACTATGGCACTCCGGAAATAAAATTTGTGTCTCCCTTAAC
TTATACGCATTTTCGCATTTCAGTGAAGGGTAAGAAACCCCATCTGGTGG
GGCCTCCGAATCGTAGGAATCAGGGCCAAGAGAATATCCCAACGCCAGAC
TCGGTCGATTCTAGAGGAGAATTCGATTTAATACACAATTCAAATCAAGC
GGATGCGGATTTCTCGATCTACAACCGTTCGTCTACGACTACTGCCAGGC
CAATCTTTCAAATCAATGATAGTGACTTTGTGACCTCGGCACCATCGTGG
CGTCCGTCGAACAGCATACGCCGGCCGCCCCCCACCCGCTCCCCCGTTGT
GGGACTGCCCACCATGCGGCCCAACGCAAGGCCTGTCCCACAAACAGGGG
GGGTCGATAGTGAGCCCAAGGTCAGCAGGTGTGTGTGGGCGATCGTCAAC
TGCTGCACGGGCGAGAGCAAGAAGGTGCGGTACAACTGCTTCGAGGAGTT
CGGATGCCATGGAGCCTTCTGGGACATCAATCCGTGTGCCGATGAGGGCG
TGAAGCAAGGTGCGCTCACCAAGGTCCTGGACGCCTTCCAAAACCAATGA
AAGCTTTCTAGACCAT
BS12892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hdly-RC | 1134 | CG5630-PC | 1..1134 | 17..1150 | 5670 | 100 | Plus |
hdly-RA | 1134 | CG5630-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
hdly-RB | 1338 | CG5630-PB | 1..1093 | 17..1109 | 5465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hdly-RC | 2132 | CG5630-RC | 136..1269 | 17..1150 | 5670 | 100 | Plus |
hdly-RA | 1386 | CG5630-RA | 136..1269 | 17..1150 | 5670 | 100 | Plus |
hdly-RB | 1685 | CG5630-RB | 136..1228 | 17..1109 | 5465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20926344..20926690 | 263..609 | 1735 | 100 | Plus |
3R | 32079331 | 3R | 20927187..20927507 | 830..1150 | 1605 | 100 | Plus |
3R | 32079331 | 3R | 20926757..20926977 | 610..830 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 20925944..20926102 | 17..175 | 795 | 100 | Plus |
3R | 32079331 | 3R | 20926163..20926252 | 174..263 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:47:59 has no hits.
BS12892.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:44 Download gff for
BS12892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5630-RA | 1..1134 | 17..1150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:51 Download gff for
BS12892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5630-RA | 126..1269 | 10..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:10 Download gff for
BS12892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5630-RA | 136..1268 | 17..1149 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:44 Download gff for
BS12892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5630-RA | 126..1269 | 10..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:14 Download gff for
BS12892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hdly-RA | 136..1268 | 17..1149 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:14 Download gff for
BS12892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20925944..20926102 | 17..175 | 100 | -> | Plus |
3R | 20926165..20926252 | 176..263 | 100 | -> | Plus |
3R | 20926345..20926690 | 264..609 | 100 | -> | Plus |
3R | 20926757..20926977 | 610..830 | 100 | -> | Plus |
3R | 20927188..20927506 | 831..1149 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:10 Download gff for
BS12892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16751666..16751824 | 17..175 | 100 | -> | Plus |
arm_3R | 16751887..16751974 | 176..263 | 100 | -> | Plus |
arm_3R | 16752067..16752412 | 264..609 | 100 | -> | Plus |
arm_3R | 16752479..16752699 | 610..830 | 100 | -> | Plus |
arm_3R | 16752910..16753228 | 831..1149 | 100 | | Plus |
BS12892.pep Sequence
Translation from 16 to 1149
> BS12892.pep
MNRTSLSSGSTSRRLPALLFVLLLCLVARTNGRPSQEDESDLAIIPPDAD
NVEIHKVKIVNGVMQEDHPVIMYKEDFVSEDYDPTKSETNPSHHKKHKRT
RLHHAKQVTGTEKKEDQILFDILPDKPIVLEEDLKALPHSKVGAAQLAEP
IKEEWLAKHPKKYHSRQRRQAPVSFEKVLQYYYGTPEIKFVSPLTYTHFR
ISVKGKKPHLVGPPNRRNQGQENIPTPDSVDSRGEFDLIHNSNQADADFS
IYNRSSTTTARPIFQINDSDFVTSAPSWRPSNSIRRPPPTRSPVVGLPTM
RPNARPVPQTGGVDSEPKVSRCVWAIVNCCTGESKKVRYNCFEEFGCHGA
FWDINPCADEGVKQGALTKVLDAFQNQ*
BS12892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hdly-PC | 377 | CG5630-PC | 1..377 | 1..377 | 2014 | 100 | Plus |
hdly-PA | 377 | CG5630-PA | 1..377 | 1..377 | 2014 | 100 | Plus |
hdly-PB | 445 | CG5630-PB | 1..371 | 1..371 | 1954 | 98.4 | Plus |