Clone BS12892 Report

Search the DGRC for BS12892

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:92
Vector:pDNR-Dual
Associated Gene/Transcripthdly-RA
Protein status:BS12892.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12892.3prime Sequence

659 bp (635 high quality bases) assembled on 2006-10-13

> BS12892.3prime
ATGGTCTAGAAAGCTTTCATTGGTTTTGGAAGGCGTCCAGGACCTTGGTG
AGCGCACCTTGCTTCACGCCCTCATCGGCACACGGATTGATGTCCCAGAA
GGCTCCATGGCATCCGAACTCCTCGAAGCAGTTGTACCGCACCTTCTTGC
TCTCGCCCGTGCAGCAGTTGACGATCGCCCACACACACCTGCTGACCTTG
GGCTCACTATCGACCCCCCCTGTTTGTGGGACAGGCCTTGCGTTGGGCCG
CATGGTGGGCAGTCCCACAACGGGGGAGCGGGTGGGGGGCGGCCGGCGTA
TGCTGTTCGACGGACGCCACGATGGTGCCGAGGTCACAAAGTCACTATCA
TTGATTTGAAAGATTGGCCTGGCAGTAGTCGTAGACGAACGGTTGTAGAT
CGAGAAATCCGCATCCGCTTGATTTGAATTGTGTATTAAATCGAATTCTC
CTCTAGAATCGACCGAGTCTGGCGTTGGGATATTCTCTTGGCCCTGATTC
CTACGATTCGGAGGCCCCACCAGATGGGGTTTCTTACCCTTCACTGAAAT
GCGAAAATGCGTATAAGTTAAGGGAGACACAAATTTTATTTCCGGAGTGC
CATAGTAGTATTGCAGGACTTTCTCAAAGCTTACAGGAACCTGTCGTCGC
TGGCGACTG

BS12892.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5630-PA 1134 CG5630-RA 492..1134 659..17 3190 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
hdly-RC 2132 CG5630-RC 627..1269 659..17 3200 99.8 Minus
hdly-RA 1386 CG5630-RA 627..1269 659..17 3200 99.8 Minus
hdly-RB 1685 CG5630-RB 627..1228 659..58 2995 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20927187..20927507 337..17 1605 100 Minus
3R 32079331 3R 20926757..20926977 557..337 1105 100 Minus
3R 32079331 3R 20926589..20926690 659..558 495 99 Minus
Blast to na_te.dros performed on 2015-02-08 12:10:21 has no hits.

BS12892.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:41 Download gff for BS12892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5630-PA 492..1134 17..659 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:26 Download gff for BS12892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 627..1274 10..659 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:05 Download gff for BS12892.3prime
Subject Subject Range Query Range Percent Splice Strand
hdly-RA 627..1274 10..659 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:05 Download gff for BS12892.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20926589..20926690 558..659 99 -> Minus
3R 20926757..20926977 337..557 100 -> Minus
3R 20927188..20927512 10..336 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:26 Download gff for BS12892.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16752311..16752412 558..659 99 -> Minus
arm_3R 16752479..16752699 337..557 100 -> Minus
arm_3R 16752910..16753234 10..336 99   Minus

BS12892.5prime Sequence

832 bp (703 high quality bases) assembled on 2006-10-13

> BS12892.5prime
GAAGTTATCAGTCGACATGAATCGAACTTCGCTGTCCAGTGGCAGCACCA
GCCGCAGACTTCCGGCTCTCTTGTTTGTCCTGCTGCTCTGCCTGGTGGCC
AGGACCAACGGTCGTCCTTCGCAAGAGGACGAGAGCGACTTGGCCATCAT
TCCGCCGGATGCCGACAATGTGGAGATCCATAAGGTTAAAATAGTGAACG
GTGTCATGCAAGAAGATCATCCGGTTATCATGTACAAGGAGGACTTCGTC
AGCGAGGATTATGATCCAACAAAAAGCGAAACAAATCCTAGTCACCACAA
GAAGCATAAGCGGACGCGGCTCCATCATGCAAAGCAAGTAACTGGAACAG
AAAAGAAGGAGGACCAGATCCTTTTCGATATTCTGCCCGACAAGCCGATC
GTCCTGGAAGAGGACCTCAAGGCTCTCCCACACAGCAAAGTTGGGGCTGC
CCAACTGGCGGAACCCATCAAGGAAGAGTGGCTGGCTAAGCATCCCAAGA
AGTACCACAGTCGCCAGCGACGACAGGCTCCTGTAAGCTTTGAGAAAGTC
CTGCAATACTACTATGGCACTCCGGAAATAAAATTTGTGTCTCCCTTAAC
TTATACGCATTTTCGCATTTCAGTGAAGGGTAAGAAACCCCATCTGGTGG
GGCCTCCGAATCGTAGGAATCAGGGCCAAGAGAATATCCCAACGCCAGAC
TCGGTCGATTCTAGAAGAGAATTCGATTTAATACACAATTCAAATCAAGC
GGATGCGGATTTCTCGATCTACAACCGTTCGTCTACGACTACTGCCAGGC
CAATCTTTCAAATCAATGATAGTGACTTTGTG

BS12892.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5630-PA 1134 CG5630-RA 1..816 17..832 4055 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
hdly-RC 2132 CG5630-RC 136..951 17..832 4065 99.9 Plus
hdly-RB 1685 CG5630-RB 136..951 17..832 4065 99.9 Plus
hdly-RA 1386 CG5630-RA 136..951 17..832 4065 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20926344..20926690 263..609 1735 100 Plus
3R 32079331 3R 20926757..20926977 610..830 1090 99.5 Plus
3R 32079331 3R 20925944..20926102 17..175 795 100 Plus
3R 32079331 3R 20926163..20926252 174..263 450 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:18:47 has no hits.

BS12892.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:41 Download gff for BS12892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5630-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:36 Download gff for BS12892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 131..951 10..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:43 Download gff for BS12892.5prime
Subject Subject Range Query Range Percent Splice Strand
hdly-RA 131..951 10..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:43 Download gff for BS12892.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20925939..20926102 10..175 98 -> Plus
3R 20926165..20926252 176..263 100 -> Plus
3R 20926345..20926690 264..609 100 -> Plus
3R 20926757..20926978 610..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:36 Download gff for BS12892.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16751661..16751824 10..175 98 -> Plus
arm_3R 16751887..16751974 176..263 100 -> Plus
arm_3R 16752067..16752412 264..609 100 -> Plus
arm_3R 16752479..16752700 610..832 99   Plus

BS12892.complete Sequence

1166 bp assembled on 2006-11-01

GenBank Submission: FJ637327

> BS12892.complete
GAAGTTATCAGTCGACATGAATCGAACTTCGCTGTCCAGTGGCAGCACCA
GCCGCAGACTTCCGGCTCTCTTGTTTGTCCTGCTGCTCTGCCTGGTGGCC
AGGACCAACGGTCGTCCTTCGCAAGAGGACGAGAGCGACTTGGCCATCAT
TCCGCCGGATGCCGACAATGTGGAGATCCATAAGGTTAAAATAGTGAACG
GTGTCATGCAAGAAGATCATCCGGTTATCATGTACAAGGAGGACTTCGTC
AGCGAGGATTATGATCCAACAAAAAGCGAAACAAATCCTAGTCACCACAA
GAAGCATAAGCGGACGCGGCTCCATCATGCAAAGCAAGTAACTGGAACAG
AAAAGAAGGAGGACCAGATCCTTTTCGATATTCTGCCCGACAAGCCGATC
GTCCTGGAAGAGGACCTCAAGGCTCTCCCACACAGCAAAGTTGGGGCTGC
CCAACTGGCGGAACCCATCAAGGAAGAGTGGCTGGCTAAGCATCCCAAGA
AGTACCACAGTCGCCAGCGACGACAGGCTCCTGTAAGCTTTGAGAAAGTC
CTGCAATACTACTATGGCACTCCGGAAATAAAATTTGTGTCTCCCTTAAC
TTATACGCATTTTCGCATTTCAGTGAAGGGTAAGAAACCCCATCTGGTGG
GGCCTCCGAATCGTAGGAATCAGGGCCAAGAGAATATCCCAACGCCAGAC
TCGGTCGATTCTAGAGGAGAATTCGATTTAATACACAATTCAAATCAAGC
GGATGCGGATTTCTCGATCTACAACCGTTCGTCTACGACTACTGCCAGGC
CAATCTTTCAAATCAATGATAGTGACTTTGTGACCTCGGCACCATCGTGG
CGTCCGTCGAACAGCATACGCCGGCCGCCCCCCACCCGCTCCCCCGTTGT
GGGACTGCCCACCATGCGGCCCAACGCAAGGCCTGTCCCACAAACAGGGG
GGGTCGATAGTGAGCCCAAGGTCAGCAGGTGTGTGTGGGCGATCGTCAAC
TGCTGCACGGGCGAGAGCAAGAAGGTGCGGTACAACTGCTTCGAGGAGTT
CGGATGCCATGGAGCCTTCTGGGACATCAATCCGTGTGCCGATGAGGGCG
TGAAGCAAGGTGCGCTCACCAAGGTCCTGGACGCCTTCCAAAACCAATGA
AAGCTTTCTAGACCAT

BS12892.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
hdly-RC 1134 CG5630-PC 1..1134 17..1150 5670 100 Plus
hdly-RA 1134 CG5630-PA 1..1134 17..1150 5670 100 Plus
hdly-RB 1338 CG5630-PB 1..1093 17..1109 5465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
hdly-RC 2132 CG5630-RC 136..1269 17..1150 5670 100 Plus
hdly-RA 1386 CG5630-RA 136..1269 17..1150 5670 100 Plus
hdly-RB 1685 CG5630-RB 136..1228 17..1109 5465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20926344..20926690 263..609 1735 100 Plus
3R 32079331 3R 20927187..20927507 830..1150 1605 100 Plus
3R 32079331 3R 20926757..20926977 610..830 1105 100 Plus
3R 32079331 3R 20925944..20926102 17..175 795 100 Plus
3R 32079331 3R 20926163..20926252 174..263 450 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:47:59 has no hits.

BS12892.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:44 Download gff for BS12892.complete
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 1..1134 17..1150 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:51 Download gff for BS12892.complete
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 126..1269 10..1157 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:10 Download gff for BS12892.complete
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 136..1268 17..1149 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:44 Download gff for BS12892.complete
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 126..1269 10..1157 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:14 Download gff for BS12892.complete
Subject Subject Range Query Range Percent Splice Strand
hdly-RA 136..1268 17..1149 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:14 Download gff for BS12892.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20925944..20926102 17..175 100 -> Plus
3R 20926165..20926252 176..263 100 -> Plus
3R 20926345..20926690 264..609 100 -> Plus
3R 20926757..20926977 610..830 100 -> Plus
3R 20927188..20927506 831..1149 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:10 Download gff for BS12892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16751666..16751824 17..175 100 -> Plus
arm_3R 16751887..16751974 176..263 100 -> Plus
arm_3R 16752067..16752412 264..609 100 -> Plus
arm_3R 16752479..16752699 610..830 100 -> Plus
arm_3R 16752910..16753228 831..1149 100   Plus

BS12892.pep Sequence

Translation from 16 to 1149

> BS12892.pep
MNRTSLSSGSTSRRLPALLFVLLLCLVARTNGRPSQEDESDLAIIPPDAD
NVEIHKVKIVNGVMQEDHPVIMYKEDFVSEDYDPTKSETNPSHHKKHKRT
RLHHAKQVTGTEKKEDQILFDILPDKPIVLEEDLKALPHSKVGAAQLAEP
IKEEWLAKHPKKYHSRQRRQAPVSFEKVLQYYYGTPEIKFVSPLTYTHFR
ISVKGKKPHLVGPPNRRNQGQENIPTPDSVDSRGEFDLIHNSNQADADFS
IYNRSSTTTARPIFQINDSDFVTSAPSWRPSNSIRRPPPTRSPVVGLPTM
RPNARPVPQTGGVDSEPKVSRCVWAIVNCCTGESKKVRYNCFEEFGCHGA
FWDINPCADEGVKQGALTKVLDAFQNQ*

BS12892.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
hdly-PC 377 CG5630-PC 1..377 1..377 2014 100 Plus
hdly-PA 377 CG5630-PA 1..377 1..377 2014 100 Plus
hdly-PB 445 CG5630-PB 1..371 1..371 1954 98.4 Plus