Clone Sequence Records
BS12893.complete Sequence
2474 bp assembled on 2009-12-07
GenBank Submission: KX804482
> BS12893.complete
GAAGTTATCAGTCGACATGGACGATAGGAAGGCACTGATTACCCTCGATG
GCGAATCAAGCGCTGAGGATGATCCAATCATACTCCAAAAGGAGGCAGGT
CCAACTTCCAAAGCTGTGCAGGATTTCGGACTCCACCAAAGAGAAGAGCC
CTCCACTAGTGCTTTAGCTAGAAGAGCGACGCTTTCGGGGAATAACCACT
TATTGGATGATTCTCAGCCACTGCTAATGGGCAACAATTCAGTGCCTCCC
GATATTCCAATTAATGGAAGTGCAGGCAGCCCGAATAGGAACATCAACAG
CAGCGAACCCATTTTCCACCTCAGATCCCGAACAGCAGCCGCATCCACGC
CCAATTACGAGAGCTTGGACTACGAAGTATGCGAGAACACGCTCTTCCAG
GATGAGCAGCGAAAGAGGCTGACAGAGCGATTCTCCCTGCGCAAGGACAT
CATAAGATGGATCATTTTTATACAGATTGGCATTATCACCGCACTGATAG
CTTGCACCATAGATATTATAATCGAAGAGCTCTCGATACGAAAGTACACC
TTCCTCTACAATTCTGTTAAGGAAAATGTACCCTTAAGCGATGCTTCCGA
TAGAGATCTGCTGATTCCCTACCTTTACTGGCTCCTCTTCAGCATTGTGC
CCGTGGCCTTTGGAGCAGCCATGGTCACCTACATTGAGCCCATAACCGCT
GGCAGTGGGATTCCACAGGTGAAGAGCTACCTGAACGGCGTCAAAATACC
GCGTATTGTAAGAATTAAAACGCTGGCTGTGAAGGCGATTGGAGTTATAA
CCTCGGTGGTGGGTGGTTTGGCCGGAGGAAAGGAGGGTCCAATGATACAT
GCTGGAGCTGTCGTCGCCGCCGGAATTTCGCAGGGCAAAAGCACCACGTT
TTTGAAAGATTTCCGCATATTCAAGGCTTTTCGGGATGATCACGAGAAAA
GAGATTTCGTTCTTGGAGGCGGAGCCGCGGGAGTTTCAGCTGCTTTTGGA
GCTCCAATTGGAGGCATGCTTTTTTCTCTGGAGGAAGCGGCTAGTTTCTG
GAACCAGAATCTCATTTGGCGCACCTTAGTGGCCTCCATTATCAGCGTAT
TCACCTTGAATATCGTTTTATCAGCTTACCATGGCCTAAACGATTTCACG
TTCACGGGTCTCTTCAACTTGGGCAAGTTTGATACGCCTTTGAAATTCGA
CTACTTTGAGCTGCCCATCTTCATGATTCTGGGAGTAACTGGTGGATTAC
TCGGAGCCGCCTGGAACTCTCTTAATACCAAAATCAATAAATTTCGGAAG
CGCTTTATTCCGTGGAAAATCGGAAAGGTTCTCGAAGCTGTTGTAGTGGC
AATGATGGGCGTAACTTTGGCTTGTCTAATGATTTACTTTATCAACGATT
GTCGTCCACTGGGCAACGATCCGACCAACAATCCTGTACAGCTTTTCTGC
GAGGACAACGAATATAATGCCGTGGCTGCCTTGTGGTTTCAAACGCCAGA
GGCTACAGTCAGATCCTTGTTCCACGATCCTCCAGGATCCCATAAGATTC
TGACGCTAGCCCTTTTCACAGTTGTTTACTATGTGCTGTCCTGTGCTACG
TTTGGTCTCAATGTGTCCTTGGGTGTCTTCATCCCAACTGCTCTGGTCGG
CGCAGCATGGGGTCGTCTTTTAGCCATGCTTACCTACTATGTATTCCCAC
AGGCGGAGTTCCTGCATCCGGGTAAATATGCCCTAATTGGAGCTGCAGCT
AACTTGGGTGGAGTGCTTCGAATGACCATTAGCTTGTCAGTTATATTGAT
GGAAACCACTGGCGTGGAGACGTCCTTCTTCTTTCCCCTTATCATTGCAC
TTATCAGCGCCAAGTGGGTCGGTGACTACTTCAACGAGGGCATCTACGAT
ACGCAGATCCAAGTAAATCATGTGCCCATGCTGACCTGGGAGCCATTGCC
GCAATACAAGGGTCTGAAAGCTCGCGAAATTCTAAGCAAACCAGTGATCT
GTATCAAGATCCGCGATTCCGCTAATTACATATATGAGATGCTCAAGAAG
TGCGACCACAACGGATTTCCGGTGGTCGATGATGTTTGCGGAGATCGTCG
ATCGGAGGGTCGCGTTTGTGGCATCATCTTGCGATCGCAACTGATTGTTA
TTTTGCTCAAATCCCTGTATGTGGAGAACAAACGATTCTGGCTGCCAGAA
ACTTCAATTCAGACATTCAGGGACCTCTATCCCCGTTTTCCATCAATCAA
GAGTGTTCGCAAGCTAGATGAGAAAATCAATTACACTGTGGACTTGTCCA
TGTTTATGAATCCATCACCTATTCGAGTCAATCCGCACGATTCGGTGCCT
AGAATTTTTCAGATATTCCGCGCATTGGGGTTGCGTCATTTGCTGGTCAT
CAACCATGAGAATCGCATTGCTGGCATTATAACGAGAAGGGATTTTATTT
ACAAGTAAAAGCTTTCTAGACCAT
BS12893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-b-RA | 2442 | CG8594-PA | 1..2442 | 17..2458 | 12195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-b-RA | 2647 | CG8594-RA | 71..2512 | 17..2458 | 12195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12572982..12573954 | 564..1536 | 4865 | 100 | Plus |
2R | 25286936 | 2R | 12574233..12574621 | 1705..2093 | 1945 | 100 | Plus |
2R | 25286936 | 2R | 12572138..12572377 | 17..256 | 1200 | 100 | Plus |
2R | 25286936 | 2R | 12572688..12572891 | 360..563 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 12574011..12574183 | 1534..1706 | 865 | 100 | Plus |
2R | 25286936 | 2R | 12574679..12574837 | 2093..2251 | 780 | 99.4 | Plus |
2R | 25286936 | 2R | 12575041..12575164 | 2335..2458 | 620 | 100 | Plus |
2R | 25286936 | 2R | 12572501..12572605 | 257..361 | 525 | 100 | Plus |
2R | 25286936 | 2R | 12574892..12574977 | 2250..2335 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:07:27 has no hits.
BS12893.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:13 Download gff for
BS12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-RA | 27..2466 | 17..2456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:20 Download gff for
BS12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 71..2510 | 17..2456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:45 Download gff for
BS12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-RA | 27..2466 | 17..2456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:17 Download gff for
BS12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 71..2510 | 17..2456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:17 Download gff for
BS12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12572690..12572891 | 362..563 | 100 | -> | Plus |
2R | 12572138..12572377 | 17..256 | 100 | -> | Plus |
2R | 12572501..12572605 | 257..361 | 100 | -> | Plus |
2R | 12572982..12573953 | 564..1535 | 100 | -> | Plus |
2R | 12574013..12574182 | 1536..1705 | 100 | -> | Plus |
2R | 12574234..12574620 | 1706..2092 | 100 | -> | Plus |
2R | 12574679..12574837 | 2093..2251 | 99 | -> | Plus |
2R | 12574894..12574977 | 2252..2335 | 100 | -> | Plus |
2R | 12575042..12575162 | 2336..2456 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:20 Download gff for
BS12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8459643..8459882 | 17..256 | 100 | -> | Plus |
arm_2R | 8460006..8460110 | 257..361 | 100 | -> | Plus |
arm_2R | 8460195..8460396 | 362..563 | 100 | -> | Plus |
arm_2R | 8460487..8461458 | 564..1535 | 100 | -> | Plus |
arm_2R | 8461518..8461687 | 1536..1705 | 100 | -> | Plus |
arm_2R | 8461739..8462125 | 1706..2092 | 100 | -> | Plus |
arm_2R | 8462184..8462342 | 2093..2251 | 99 | -> | Plus |
arm_2R | 8462399..8462482 | 2252..2335 | 100 | -> | Plus |
arm_2R | 8462547..8462667 | 2336..2456 | 100 | | Plus |
BS12893.3prime Sequence
922 bp (739 high quality bases) assembled on 2006-10-13
> BS12893.3prime
ATGGTCTAGAAAGCTTTTACTTGTAAATAAAATCCCTTCTCGTTATAATG
CCAGCAATGCGATTCTCATGGTTGATGACCAGCAAATGACGCAACCCCAA
TGCGCGGAATATCTGAAAAATTCTAGGCACCGAATCGTGCGGATTGACTC
GAATAGGTGATGGATTCATAAACATGGACAAGTCCACAGTGTAATTGATT
TTCTCATCTAGCTTGCGAACACTCTTGATTGATGGAAAACGGGGATAGAG
GTCCCTGAATGTCTGAATTGAAGTTTCTGGCAGCCAGAATCGTTTGTTCT
CCACATACAGGGATTTGAGCAAAATAACAATCAGTTGCGATCGCAAGATG
ATGCCACAAACGCGACCCTCCGATCGACGATCTCCGCAAACATCATCGAC
CACCGGAAATCCGTTGTGGTCGCACTTCTTGAGCATCTCATATATGTAAT
TAGCGGAATCGCGGATCTTGATACAGATCACTGGTTTGCTTAGAATTTCG
CGAGCTTTCAGACCCTTGTATTGCGGCAATGGCTCCCAGGTCAGCATGGG
CACATGATTTACTTGGATCTGCGTATCGTAGATGCCCTCGTTGAAGTAGT
CACCGACCCACTTGGCGCTGATAAGTGCAATGATAAGGGGAAAGAAGAAG
GACGTCTCCACGCCAGTGGTTTCCATCAATATAACTGACAAGCTAATGGT
CATTCGAAGCACTCCACCCAAGTTAGCTGCAGCTCCAATTAGGGCATATT
TACCCGGATGCAGGAACTCCGCCTGTGGGAATACATAGTAGGTAAGCATG
GCTAANAGACGACCCCATGCTGCGCCGACCAGAGCAGTTGGGATGAAGAC
ACCCAAGGACACATTGAGACCAAACGTAGCACAGGACAGCACATAGTAAA
CAACTGTGAAAAGGGCTAGCGT
BS12893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8594-PA | 2442 | CG8594-RA | 1537..2442 | 922..17 | 4486 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-b-RA | 2647 | CG8594-RA | 1607..2512 | 922..17 | 4504 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12574233..12574621 | 770..382 | 1945 | 100 | Minus |
2R | 25286936 | 2R | 12574679..12574837 | 382..224 | 780 | 99.4 | Minus |
2R | 25286936 | 2R | 12574030..12574183 | 922..769 | 759 | 99.4 | Minus |
2R | 25286936 | 2R | 12575041..12575164 | 140..17 | 620 | 100 | Minus |
2R | 25286936 | 2R | 12574892..12574977 | 225..140 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:46:54 has no hits.
BS12893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:42 Download gff for
BS12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-PA | 1537..2442 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:40 Download gff for
BS12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 1607..2516 | 10..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:57 Download gff for
BS12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 1607..2516 | 10..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:57 Download gff for
BS12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12575042..12575168 | 10..139 | 97 | | Minus |
2R | 12574894..12574977 | 140..223 | 100 | -> | Minus |
2R | 12574030..12574182 | 770..922 | 99 | -> | Minus |
2R | 12574234..12574620 | 383..769 | 100 | -> | Minus |
2R | 12574679..12574837 | 224..382 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:40 Download gff for
BS12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8461535..8461687 | 770..922 | 99 | -> | Minus |
arm_2R | 8461739..8462125 | 383..769 | 100 | -> | Minus |
arm_2R | 8462184..8462342 | 224..382 | 99 | -> | Minus |
arm_2R | 8462399..8462482 | 140..223 | 100 | -> | Minus |
arm_2R | 8462547..8462673 | 10..139 | 97 | | Minus |
BS12893.5prime Sequence
866 bp (760 high quality bases) assembled on 2006-10-13
> BS12893.5prime
GAAGTTATCAGTCGACATGGACGATAGGAAGGCACTGATTACCCTCGATG
GCGAATCAAGCGCTGAGGATGATCCAATCATACTCCAAAAGGAGGCAGGT
CCAACTTCCAAAGCTGTGCAGGATTTCGGACTCCACCAAAGAGAAGAGCC
CTCCACTAGTGCTTTAGCTAGAAGAGCGACGCTTTCGGGGAATAACCACT
TATTGGATGATTCTCAGCCACTGCTAATGGGCAACAATTCAGTGCCTCCC
GATATTCCAATTAATGGAAGTGCAGGCAGCCCGAATAGGAACATCAACAG
CAGCGAACCCATTTTCCACCTCAGATCCCGAACAGCAGCCGCATCCACGC
CCAATTACGAGAGCTTGGACTACGAAGTATGCGAGAACACGCTCTTCCAG
GATGAGCAGCGAAAGAGGCTGACAGAGCGATTCTCCCTGCGCAAGGACAT
CATAAGATGGATCATTTTTATACAGATTGGCATTATCACCGCACTGATAG
CTTGCACCATAGATATTATAATCGAAGAGCTCTCGATACGAAAGTACACC
TTCCTCTACAATTCTGTTAAGGAAAATGTACCCTTAAGCGATGCTTCCGA
TAGAGATCTGCTGATTCCCTACCTTTACTGGCTCCTCTTCAGCATTGTGC
CCGTGGCCTTTGGAGCAGCCATGGTCACCTACATTGAGCCCATAACCGCT
GGCAGTGGGATTCCACAGGTGAAGAGCTACCTGAACGGCGTCAAAATACC
GCGTATTGTAAGAATTAAAACGCTGGCTGTGAAGGCGATTGGAGTTATAA
CCTCGGTGGTGGGTGGTTTGGCCGGAGGAAAGGAGGGTCCAATGATACAT
GCTGGAGCTGTCGTCG
BS12893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8594-PA | 2442 | CG8594-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-b-RA | 2647 | CG8594-RA | 71..920 | 17..866 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12572982..12573284 | 564..866 | 1515 | 100 | Plus |
2R | 25286936 | 2R | 12572138..12572377 | 17..256 | 1200 | 100 | Plus |
2R | 25286936 | 2R | 12572688..12572891 | 360..563 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 12572501..12572605 | 257..361 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:20:15 has no hits.
BS12893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:42 Download gff for
BS12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:45:50 Download gff for
BS12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 71..920 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:37:58 Download gff for
BS12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 71..920 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:37:58 Download gff for
BS12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12572690..12572891 | 362..563 | 100 | -> | Plus |
2R | 12572982..12573284 | 564..866 | 100 | | Plus |
2R | 12572138..12572377 | 17..256 | 100 | -> | Plus |
2R | 12572501..12572605 | 257..361 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:45:50 Download gff for
BS12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8459643..8459882 | 17..256 | 100 | -> | Plus |
arm_2R | 8460006..8460110 | 257..361 | 100 | -> | Plus |
arm_2R | 8460195..8460396 | 362..563 | 100 | -> | Plus |
arm_2R | 8460487..8460789 | 564..866 | 100 | | Plus |
BS12893.pep Sequence
Translation from 16 to 2457
> BS12893.pep
MDDRKALITLDGESSAEDDPIILQKEAGPTSKAVQDFGLHQREEPSTSAL
ARRATLSGNNHLLDDSQPLLMGNNSVPPDIPINGSAGSPNRNINSSEPIF
HLRSRTAAASTPNYESLDYEVCENTLFQDEQRKRLTERFSLRKDIIRWII
FIQIGIITALIACTIDIIIEELSIRKYTFLYNSVKENVPLSDASDRDLLI
PYLYWLLFSIVPVAFGAAMVTYIEPITAGSGIPQVKSYLNGVKIPRIVRI
KTLAVKAIGVITSVVGGLAGGKEGPMIHAGAVVAAGISQGKSTTFLKDFR
IFKAFRDDHEKRDFVLGGGAAGVSAAFGAPIGGMLFSLEEAASFWNQNLI
WRTLVASIISVFTLNIVLSAYHGLNDFTFTGLFNLGKFDTPLKFDYFELP
IFMILGVTGGLLGAAWNSLNTKINKFRKRFIPWKIGKVLEAVVVAMMGVT
LACLMIYFINDCRPLGNDPTNNPVQLFCEDNEYNAVAALWFQTPEATVRS
LFHDPPGSHKILTLALFTVVYYVLSCATFGLNVSLGVFIPTALVGAAWGR
LLAMLTYYVFPQAEFLHPGKYALIGAAANLGGVLRMTISLSVILMETTGV
ETSFFFPLIIALISAKWVGDYFNEGIYDTQIQVNHVPMLTWEPLPQYKGL
KAREILSKPVICIKIRDSANYIYEMLKKCDHNGFPVVDDVCGDRRSEGRV
CGIILRSQLIVILLKSLYVENKRFWLPETSIQTFRDLYPRFPSIKSVRKL
DEKINYTVDLSMFMNPSPIRVNPHDSVPRIFQIFRALGLRHLLVINHENR
IAGIITRRDFIYK*
BS12893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-b-PA | 813 | CG8594-PA | 1..813 | 1..813 | 4201 | 100 | Plus |
ClC-c-PB | 822 | CG5284-PB | 103..805 | 128..811 | 601 | 27.8 | Plus |
ClC-c-PD | 893 | CG5284-PD | 174..876 | 128..811 | 601 | 27.8 | Plus |
ClC-c-PC | 893 | CG5284-PC | 174..876 | 128..811 | 601 | 27.8 | Plus |
ClC-a-PG | 1018 | CG31116-PG | 124..606 | 148..650 | 409 | 27.4 | Plus |