Clone BS12893 Report

Search the DGRC for BS12893

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:128
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptClC-b-RA
Protein status:BS12893.pep: full length peptide match
Sequenced Size:2474

Clone Sequence Records

BS12893.complete Sequence

2474 bp assembled on 2009-12-07

GenBank Submission: KX804482

> BS12893.complete
GAAGTTATCAGTCGACATGGACGATAGGAAGGCACTGATTACCCTCGATG
GCGAATCAAGCGCTGAGGATGATCCAATCATACTCCAAAAGGAGGCAGGT
CCAACTTCCAAAGCTGTGCAGGATTTCGGACTCCACCAAAGAGAAGAGCC
CTCCACTAGTGCTTTAGCTAGAAGAGCGACGCTTTCGGGGAATAACCACT
TATTGGATGATTCTCAGCCACTGCTAATGGGCAACAATTCAGTGCCTCCC
GATATTCCAATTAATGGAAGTGCAGGCAGCCCGAATAGGAACATCAACAG
CAGCGAACCCATTTTCCACCTCAGATCCCGAACAGCAGCCGCATCCACGC
CCAATTACGAGAGCTTGGACTACGAAGTATGCGAGAACACGCTCTTCCAG
GATGAGCAGCGAAAGAGGCTGACAGAGCGATTCTCCCTGCGCAAGGACAT
CATAAGATGGATCATTTTTATACAGATTGGCATTATCACCGCACTGATAG
CTTGCACCATAGATATTATAATCGAAGAGCTCTCGATACGAAAGTACACC
TTCCTCTACAATTCTGTTAAGGAAAATGTACCCTTAAGCGATGCTTCCGA
TAGAGATCTGCTGATTCCCTACCTTTACTGGCTCCTCTTCAGCATTGTGC
CCGTGGCCTTTGGAGCAGCCATGGTCACCTACATTGAGCCCATAACCGCT
GGCAGTGGGATTCCACAGGTGAAGAGCTACCTGAACGGCGTCAAAATACC
GCGTATTGTAAGAATTAAAACGCTGGCTGTGAAGGCGATTGGAGTTATAA
CCTCGGTGGTGGGTGGTTTGGCCGGAGGAAAGGAGGGTCCAATGATACAT
GCTGGAGCTGTCGTCGCCGCCGGAATTTCGCAGGGCAAAAGCACCACGTT
TTTGAAAGATTTCCGCATATTCAAGGCTTTTCGGGATGATCACGAGAAAA
GAGATTTCGTTCTTGGAGGCGGAGCCGCGGGAGTTTCAGCTGCTTTTGGA
GCTCCAATTGGAGGCATGCTTTTTTCTCTGGAGGAAGCGGCTAGTTTCTG
GAACCAGAATCTCATTTGGCGCACCTTAGTGGCCTCCATTATCAGCGTAT
TCACCTTGAATATCGTTTTATCAGCTTACCATGGCCTAAACGATTTCACG
TTCACGGGTCTCTTCAACTTGGGCAAGTTTGATACGCCTTTGAAATTCGA
CTACTTTGAGCTGCCCATCTTCATGATTCTGGGAGTAACTGGTGGATTAC
TCGGAGCCGCCTGGAACTCTCTTAATACCAAAATCAATAAATTTCGGAAG
CGCTTTATTCCGTGGAAAATCGGAAAGGTTCTCGAAGCTGTTGTAGTGGC
AATGATGGGCGTAACTTTGGCTTGTCTAATGATTTACTTTATCAACGATT
GTCGTCCACTGGGCAACGATCCGACCAACAATCCTGTACAGCTTTTCTGC
GAGGACAACGAATATAATGCCGTGGCTGCCTTGTGGTTTCAAACGCCAGA
GGCTACAGTCAGATCCTTGTTCCACGATCCTCCAGGATCCCATAAGATTC
TGACGCTAGCCCTTTTCACAGTTGTTTACTATGTGCTGTCCTGTGCTACG
TTTGGTCTCAATGTGTCCTTGGGTGTCTTCATCCCAACTGCTCTGGTCGG
CGCAGCATGGGGTCGTCTTTTAGCCATGCTTACCTACTATGTATTCCCAC
AGGCGGAGTTCCTGCATCCGGGTAAATATGCCCTAATTGGAGCTGCAGCT
AACTTGGGTGGAGTGCTTCGAATGACCATTAGCTTGTCAGTTATATTGAT
GGAAACCACTGGCGTGGAGACGTCCTTCTTCTTTCCCCTTATCATTGCAC
TTATCAGCGCCAAGTGGGTCGGTGACTACTTCAACGAGGGCATCTACGAT
ACGCAGATCCAAGTAAATCATGTGCCCATGCTGACCTGGGAGCCATTGCC
GCAATACAAGGGTCTGAAAGCTCGCGAAATTCTAAGCAAACCAGTGATCT
GTATCAAGATCCGCGATTCCGCTAATTACATATATGAGATGCTCAAGAAG
TGCGACCACAACGGATTTCCGGTGGTCGATGATGTTTGCGGAGATCGTCG
ATCGGAGGGTCGCGTTTGTGGCATCATCTTGCGATCGCAACTGATTGTTA
TTTTGCTCAAATCCCTGTATGTGGAGAACAAACGATTCTGGCTGCCAGAA
ACTTCAATTCAGACATTCAGGGACCTCTATCCCCGTTTTCCATCAATCAA
GAGTGTTCGCAAGCTAGATGAGAAAATCAATTACACTGTGGACTTGTCCA
TGTTTATGAATCCATCACCTATTCGAGTCAATCCGCACGATTCGGTGCCT
AGAATTTTTCAGATATTCCGCGCATTGGGGTTGCGTCATTTGCTGGTCAT
CAACCATGAGAATCGCATTGCTGGCATTATAACGAGAAGGGATTTTATTT
ACAAGTAAAAGCTTTCTAGACCAT

BS12893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-b-RA 2442 CG8594-PA 1..2442 17..2458 12195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-b-RA 2647 CG8594-RA 71..2512 17..2458 12195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12572982..12573954 564..1536 4865 100 Plus
2R 25286936 2R 12574233..12574621 1705..2093 1945 100 Plus
2R 25286936 2R 12572138..12572377 17..256 1200 100 Plus
2R 25286936 2R 12572688..12572891 360..563 1020 100 Plus
2R 25286936 2R 12574011..12574183 1534..1706 865 100 Plus
2R 25286936 2R 12574679..12574837 2093..2251 780 99.4 Plus
2R 25286936 2R 12575041..12575164 2335..2458 620 100 Plus
2R 25286936 2R 12572501..12572605 257..361 525 100 Plus
2R 25286936 2R 12574892..12574977 2250..2335 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:07:27 has no hits.

BS12893.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:13 Download gff for BS12893.complete
Subject Subject Range Query Range Percent Splice Strand
CG8594-RA 27..2466 17..2456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:20 Download gff for BS12893.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 71..2510 17..2456 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:45 Download gff for BS12893.complete
Subject Subject Range Query Range Percent Splice Strand
CG8594-RA 27..2466 17..2456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:17 Download gff for BS12893.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 71..2510 17..2456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:17 Download gff for BS12893.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12572690..12572891 362..563 100 -> Plus
2R 12572138..12572377 17..256 100 -> Plus
2R 12572501..12572605 257..361 100 -> Plus
2R 12572982..12573953 564..1535 100 -> Plus
2R 12574013..12574182 1536..1705 100 -> Plus
2R 12574234..12574620 1706..2092 100 -> Plus
2R 12574679..12574837 2093..2251 99 -> Plus
2R 12574894..12574977 2252..2335 100 -> Plus
2R 12575042..12575162 2336..2456 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:20 Download gff for BS12893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8459643..8459882 17..256 100 -> Plus
arm_2R 8460006..8460110 257..361 100 -> Plus
arm_2R 8460195..8460396 362..563 100 -> Plus
arm_2R 8460487..8461458 564..1535 100 -> Plus
arm_2R 8461518..8461687 1536..1705 100 -> Plus
arm_2R 8461739..8462125 1706..2092 100 -> Plus
arm_2R 8462184..8462342 2093..2251 99 -> Plus
arm_2R 8462399..8462482 2252..2335 100 -> Plus
arm_2R 8462547..8462667 2336..2456 100   Plus

BS12893.3prime Sequence

922 bp (739 high quality bases) assembled on 2006-10-13

> BS12893.3prime
ATGGTCTAGAAAGCTTTTACTTGTAAATAAAATCCCTTCTCGTTATAATG
CCAGCAATGCGATTCTCATGGTTGATGACCAGCAAATGACGCAACCCCAA
TGCGCGGAATATCTGAAAAATTCTAGGCACCGAATCGTGCGGATTGACTC
GAATAGGTGATGGATTCATAAACATGGACAAGTCCACAGTGTAATTGATT
TTCTCATCTAGCTTGCGAACACTCTTGATTGATGGAAAACGGGGATAGAG
GTCCCTGAATGTCTGAATTGAAGTTTCTGGCAGCCAGAATCGTTTGTTCT
CCACATACAGGGATTTGAGCAAAATAACAATCAGTTGCGATCGCAAGATG
ATGCCACAAACGCGACCCTCCGATCGACGATCTCCGCAAACATCATCGAC
CACCGGAAATCCGTTGTGGTCGCACTTCTTGAGCATCTCATATATGTAAT
TAGCGGAATCGCGGATCTTGATACAGATCACTGGTTTGCTTAGAATTTCG
CGAGCTTTCAGACCCTTGTATTGCGGCAATGGCTCCCAGGTCAGCATGGG
CACATGATTTACTTGGATCTGCGTATCGTAGATGCCCTCGTTGAAGTAGT
CACCGACCCACTTGGCGCTGATAAGTGCAATGATAAGGGGAAAGAAGAAG
GACGTCTCCACGCCAGTGGTTTCCATCAATATAACTGACAAGCTAATGGT
CATTCGAAGCACTCCACCCAAGTTAGCTGCAGCTCCAATTAGGGCATATT
TACCCGGATGCAGGAACTCCGCCTGTGGGAATACATAGTAGGTAAGCATG
GCTAANAGACGACCCCATGCTGCGCCGACCAGAGCAGTTGGGATGAAGAC
ACCCAAGGACACATTGAGACCAAACGTAGCACAGGACAGCACATAGTAAA
CAACTGTGAAAAGGGCTAGCGT

BS12893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8594-PA 2442 CG8594-RA 1537..2442 922..17 4486 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-b-RA 2647 CG8594-RA 1607..2512 922..17 4504 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12574233..12574621 770..382 1945 100 Minus
2R 25286936 2R 12574679..12574837 382..224 780 99.4 Minus
2R 25286936 2R 12574030..12574183 922..769 759 99.4 Minus
2R 25286936 2R 12575041..12575164 140..17 620 100 Minus
2R 25286936 2R 12574892..12574977 225..140 430 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:46:54 has no hits.

BS12893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:42 Download gff for BS12893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8594-PA 1537..2442 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:40 Download gff for BS12893.3prime
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 1607..2516 10..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:57 Download gff for BS12893.3prime
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 1607..2516 10..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:57 Download gff for BS12893.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12575042..12575168 10..139 97   Minus
2R 12574894..12574977 140..223 100 -> Minus
2R 12574030..12574182 770..922 99 -> Minus
2R 12574234..12574620 383..769 100 -> Minus
2R 12574679..12574837 224..382 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:40 Download gff for BS12893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8461535..8461687 770..922 99 -> Minus
arm_2R 8461739..8462125 383..769 100 -> Minus
arm_2R 8462184..8462342 224..382 99 -> Minus
arm_2R 8462399..8462482 140..223 100 -> Minus
arm_2R 8462547..8462673 10..139 97   Minus

BS12893.5prime Sequence

866 bp (760 high quality bases) assembled on 2006-10-13

> BS12893.5prime
GAAGTTATCAGTCGACATGGACGATAGGAAGGCACTGATTACCCTCGATG
GCGAATCAAGCGCTGAGGATGATCCAATCATACTCCAAAAGGAGGCAGGT
CCAACTTCCAAAGCTGTGCAGGATTTCGGACTCCACCAAAGAGAAGAGCC
CTCCACTAGTGCTTTAGCTAGAAGAGCGACGCTTTCGGGGAATAACCACT
TATTGGATGATTCTCAGCCACTGCTAATGGGCAACAATTCAGTGCCTCCC
GATATTCCAATTAATGGAAGTGCAGGCAGCCCGAATAGGAACATCAACAG
CAGCGAACCCATTTTCCACCTCAGATCCCGAACAGCAGCCGCATCCACGC
CCAATTACGAGAGCTTGGACTACGAAGTATGCGAGAACACGCTCTTCCAG
GATGAGCAGCGAAAGAGGCTGACAGAGCGATTCTCCCTGCGCAAGGACAT
CATAAGATGGATCATTTTTATACAGATTGGCATTATCACCGCACTGATAG
CTTGCACCATAGATATTATAATCGAAGAGCTCTCGATACGAAAGTACACC
TTCCTCTACAATTCTGTTAAGGAAAATGTACCCTTAAGCGATGCTTCCGA
TAGAGATCTGCTGATTCCCTACCTTTACTGGCTCCTCTTCAGCATTGTGC
CCGTGGCCTTTGGAGCAGCCATGGTCACCTACATTGAGCCCATAACCGCT
GGCAGTGGGATTCCACAGGTGAAGAGCTACCTGAACGGCGTCAAAATACC
GCGTATTGTAAGAATTAAAACGCTGGCTGTGAAGGCGATTGGAGTTATAA
CCTCGGTGGTGGGTGGTTTGGCCGGAGGAAAGGAGGGTCCAATGATACAT
GCTGGAGCTGTCGTCG

BS12893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8594-PA 2442 CG8594-RA 1..850 17..866 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-b-RA 2647 CG8594-RA 71..920 17..866 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12572982..12573284 564..866 1515 100 Plus
2R 25286936 2R 12572138..12572377 17..256 1200 100 Plus
2R 25286936 2R 12572688..12572891 360..563 1020 100 Plus
2R 25286936 2R 12572501..12572605 257..361 525 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:20:15 has no hits.

BS12893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:42 Download gff for BS12893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8594-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:45:50 Download gff for BS12893.5prime
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 71..920 17..866 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:37:58 Download gff for BS12893.5prime
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 71..920 17..866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:37:58 Download gff for BS12893.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12572690..12572891 362..563 100 -> Plus
2R 12572982..12573284 564..866 100   Plus
2R 12572138..12572377 17..256 100 -> Plus
2R 12572501..12572605 257..361 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:45:50 Download gff for BS12893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8459643..8459882 17..256 100 -> Plus
arm_2R 8460006..8460110 257..361 100 -> Plus
arm_2R 8460195..8460396 362..563 100 -> Plus
arm_2R 8460487..8460789 564..866 100   Plus

BS12893.pep Sequence

Translation from 16 to 2457

> BS12893.pep
MDDRKALITLDGESSAEDDPIILQKEAGPTSKAVQDFGLHQREEPSTSAL
ARRATLSGNNHLLDDSQPLLMGNNSVPPDIPINGSAGSPNRNINSSEPIF
HLRSRTAAASTPNYESLDYEVCENTLFQDEQRKRLTERFSLRKDIIRWII
FIQIGIITALIACTIDIIIEELSIRKYTFLYNSVKENVPLSDASDRDLLI
PYLYWLLFSIVPVAFGAAMVTYIEPITAGSGIPQVKSYLNGVKIPRIVRI
KTLAVKAIGVITSVVGGLAGGKEGPMIHAGAVVAAGISQGKSTTFLKDFR
IFKAFRDDHEKRDFVLGGGAAGVSAAFGAPIGGMLFSLEEAASFWNQNLI
WRTLVASIISVFTLNIVLSAYHGLNDFTFTGLFNLGKFDTPLKFDYFELP
IFMILGVTGGLLGAAWNSLNTKINKFRKRFIPWKIGKVLEAVVVAMMGVT
LACLMIYFINDCRPLGNDPTNNPVQLFCEDNEYNAVAALWFQTPEATVRS
LFHDPPGSHKILTLALFTVVYYVLSCATFGLNVSLGVFIPTALVGAAWGR
LLAMLTYYVFPQAEFLHPGKYALIGAAANLGGVLRMTISLSVILMETTGV
ETSFFFPLIIALISAKWVGDYFNEGIYDTQIQVNHVPMLTWEPLPQYKGL
KAREILSKPVICIKIRDSANYIYEMLKKCDHNGFPVVDDVCGDRRSEGRV
CGIILRSQLIVILLKSLYVENKRFWLPETSIQTFRDLYPRFPSIKSVRKL
DEKINYTVDLSMFMNPSPIRVNPHDSVPRIFQIFRALGLRHLLVINHENR
IAGIITRRDFIYK*

BS12893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-b-PA 813 CG8594-PA 1..813 1..813 4201 100 Plus
ClC-c-PB 822 CG5284-PB 103..805 128..811 601 27.8 Plus
ClC-c-PD 893 CG5284-PD 174..876 128..811 601 27.8 Plus
ClC-c-PC 893 CG5284-PC 174..876 128..811 601 27.8 Plus
ClC-a-PG 1018 CG31116-PG 124..606 148..650 409 27.4 Plus