Clone Sequence Records
BS12894.3prime Sequence
723 bp (632 high quality bases) assembled on 2006-10-13
> BS12894.3prime
ATGGTCTAGAAAGCTTTCAGGATCGATGTAGTCCCGCCACCGCCGGCGAC
ATATGCACGTTCGGACCAACCTGTTGGCTACCCGGTCCACTGCCCATACC
GCCCATAAGAGTCACATGCTTCCTATAGTTGGTGAACTGCTCCAGGTATT
GTTTCACGGTGTCCATTGGCTCAAAGATGTCGTTGTGCTTGGCATGCAGC
TGCTGTTGCCCCATTGCCGTCATTATTGTCTGTGGAGCGAAATAGGAGGG
AAAGTCCTTATTCACAGCAATGCCGAGGAATCCCTGCAGCATTTCGCGTA
TCATTTCCCAGCAGTAGGCCAGAATCACGCATGACTTGTACTCGATTTCG
ATGAGGATGCCCTTGAAGTGCTCCATCATGGTGACGGAACCGAGTTTGAT
AACAAAGTCACCATACTCGAAACGAGCGCCACGGGACTCGATTTTGGTCT
GCTTTTTGGAGGTGAAGGTGTTGGTCATCTTGAGCATGAGCAGATCGAAG
ATATTGTCGGCGACAATGGCCACTTGTTTGCCGGTGCCATTGTCGATGAT
CGAGAACGTGGAGGCGGGATACTCGGAGTTGTGCAGGACGTGGACTGCGC
GTCCAGGTGCTCCATTGTGCGGCTGTGGCGTCGAGATGAACGTTTCGCAG
TCCACCAGAAATTGACCGGCATGTGTGGCGCCCAGGGCGAGCAGACGCTT
GCTCAGCTGATCGATTATGTGGG
BS12894.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18780-PA | 759 | MED20-RA | 53..759 | 723..17 | 3535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED20-RB | 1037 | CG18780-RB | 140..846 | 723..17 | 3535 | 100 | Minus |
| MED20-RA | 1037 | CG18780-RA | 140..846 | 723..17 | 3535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8072003..8072709 | 17..723 | 3535 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 06:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1623..1656 | 659..626 | 107 | 79.4 | Minus |
BS12894.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:42 Download gff for
BS12894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18780-PA | 53..759 | 17..723 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:06 Download gff for
BS12894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 140..846 | 17..723 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:48 Download gff for
BS12894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 140..846 | 17..723 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:48 Download gff for
BS12894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8072003..8072709 | 17..723 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:06 Download gff for
BS12894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8072003..8072709 | 17..723 | 100 | | Plus |
BS12894.5prime Sequence
789 bp (719 high quality bases) assembled on 2006-10-13
> BS12894.5prime
GAAGTTATCAGTCGACATGGGAGTAACTATCCTTCAACCGTATCCCTTAC
CCGAAGGCAAATCGGGTGCCCACATAATCGATCAGCTGAGCAAGCGTCTG
CTCGCCCTGGGCGCCACACATGCCGGTCAATTTCTGGTGGACTGCGAAAC
GTTCATCTCGACGCCACAGCCGCACAATGGAGCACCTGGACGCGCAGTCC
ACGTCCTGCACAACTCCGAGTATCCCGCCTCCACGTTCTCGATCATCGAC
AATGGCACCGGCAAACAAGTGGCCATTGTCGCCGACAATATCTTCGATCT
GCTCATGCTCAAGATGACCAACACCTTCACCTCCAAAAAGCAGACCAAAA
TCGAGTCCCGTGGCGCTCGTTTCGAGTATGGTGACTTTGTTATCAAACTC
GGTTCCGTCACCATGATGGAGCACTTCAAGGGCATCCTCATCGAAATCGA
GTACAAGTCATGCGTGATTCTGGCCTACTGCTGGGAAATGATACGCGAAA
TGCTGCAGGGATTCCTCGGCATTGCTGTGAATAAGGACTTTCCCTCCTAT
TTCGCTCCACAGACAATAATGACGGCAATGGGGCAACAGCAGCTGCATGC
CAAGCACAACGACATCTTTGAGCCAATGGACACCGTGAAACAATACCTGG
AGCAGTTCACCAACTATAGGAAGCATGTGACTCTTATGGGCGGTATGGGC
AGTGGACCGGGTAGCCAACAGGTTGGTCCGAACGTGCATATGTCGCCGGC
GGTGGCGGGACTACATCGATCCTGAAAGCTTTCTAGACC
BS12894.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18780-PA | 759 | MED20-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED20-RB | 1037 | CG18780-RB | 88..846 | 17..775 | 3795 | 100 | Plus |
| MED20-RA | 1037 | CG18780-RA | 88..846 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8072003..8072761 | 775..17 | 3795 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 18:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1623..1656 | 133..166 | 107 | 79.4 | Plus |
BS12894.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:43 Download gff for
BS12894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18780-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:19 Download gff for
BS12894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 80..846 | 9..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:12 Download gff for
BS12894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 80..846 | 9..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:12 Download gff for
BS12894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8072003..8072769 | 9..775 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:19 Download gff for
BS12894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8072003..8072769 | 9..775 | 99 | | Minus |
BS12894.complete Sequence
791 bp assembled on 2006-11-01
GenBank Submission: FJ637328
> BS12894.complete
GAAGTTATCAGTCGACATGGGAGTAACTATCCTTCAACCGTATCCCTTAC
CCGAAGGCAAATCGGGTGCCCACATAATCGATCAGCTGAGCAAGCGTCTG
CTCGCCCTGGGCGCCACACATGCCGGTCAATTTCTGGTGGACTGCGAAAC
GTTCATCTCGACGCCACAGCCGCACAATGGAGCACCTGGACGCGCAGTCC
ACGTCCTGCACAACTCCGAGTATCCCGCCTCCACGTTCTCGATCATCGAC
AATGGCACCGGCAAACAAGTGGCCATTGTCGCCGACAATATCTTCGATCT
GCTCATGCTCAAGATGACCAACACCTTCACCTCCAAAAAGCAGACCAAAA
TCGAGTCCCGTGGCGCTCGTTTCGAGTATGGTGACTTTGTTATCAAACTC
GGTTCCGTCACCATGATGGAGCACTTCAAGGGCATCCTCATCGAAATCGA
GTACAAGTCATGCGTGATTCTGGCCTACTGCTGGGAAATGATACGCGAAA
TGCTGCAGGGATTCCTCGGCATTGCTGTGAATAAGGACTTTCCCTCCTAT
TTCGCTCCACAGACAATAATGACGGCAATGGGGCAACAGCAGCTGCATGC
CAAGCACAACGACATCTTTGAGCCAATGGACACCGTGAAACAATACCTGG
AGCAGTTCACCAACTATAGGAAGCATGTGACTCTTATGGGCGGTATGGGC
AGTGGACCGGGTAGCCAACAGGTTGGTCCGAACGTGCATATGTCGCCGGC
GGTGGCGGGACTACATCGATCCTGAAAGCTTTCTAGACCAT
BS12894.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED20-RB | 807 | CG18780-PB | 1..759 | 17..775 | 3795 | 100 | Plus |
| MED20-RA | 759 | CG18780-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED20-RB | 1037 | CG18780-RB | 88..846 | 17..775 | 3795 | 100 | Plus |
| MED20-RA | 1037 | CG18780-RA | 88..846 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8072003..8072761 | 775..17 | 3795 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1623..1656 | 133..166 | 107 | 79.4 | Plus |
BS12894.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:22 Download gff for
BS12894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:31 Download gff for
BS12894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 76..842 | 9..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:55 Download gff for
BS12894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 88..845 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:22 Download gff for
BS12894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 76..842 | 9..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:25 Download gff for
BS12894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 88..845 | 17..774 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:25 Download gff for
BS12894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8072004..8072761 | 17..774 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:55 Download gff for
BS12894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8072004..8072761 | 17..774 | 100 | | Minus |
BS12894.pep Sequence
Translation from 16 to 774
> BS12894.pep
MGVTILQPYPLPEGKSGAHIIDQLSKRLLALGATHAGQFLVDCETFISTP
QPHNGAPGRAVHVLHNSEYPASTFSIIDNGTGKQVAIVADNIFDLLMLKM
TNTFTSKKQTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEIEYKSCV
ILAYCWEMIREMLQGFLGIAVNKDFPSYFAPQTIMTAMGQQQLHAKHNDI
FEPMDTVKQYLEQFTNYRKHVTLMGGMGSGPGSQQVGPNVHMSPAVAGLH
RS*
BS12894.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED20-PA | 252 | CG18780-PA | 1..252 | 1..252 | 1322 | 100 | Plus |
| MED20-PB | 268 | CG18780-PB | 1..252 | 1..252 | 1322 | 100 | Plus |
