Clone BS12902 Report

Search the DGRC for BS12902

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptGbs-70E-RA
Protein status:BS12902.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12902.3prime Sequence

703 bp (690 high quality bases) assembled on 2006-10-13

> BS12902.3prime
ATGGTCTAGAAAGCTTTCACCAATATGGCGTATGTGGCTCCTGGTGCCAG
CCATTTTGGTCTTGCACCTTGGCCAAGGCATCGGTCAGGGTGGACCTTAT
TTGCTGGCTCGAGTTGCGATTCTGACCCTTATCATAGGGCGACAAGGCGT
TGTAATAAAAGGGCGATCGCTTGCTAATGGTGTAGTTTTTACCATCATTA
TTATCCCAATATTCTGTTTCGTTGGTGCGATAGCAGATGCAGAATTCCAG
GCGCTTGGAGGATGGCGGCAAGGTGATTTTGAAGGAGAATGTATCGAAGA
CTACATGAGCACAAGTAGCCGGTCCATAGGCCCTGGCGTATGTACAGAAG
ATATCCTGCTGGCTCTTCCAATCATCCCAGGTCACACGGACAATGATCTC
CTTCTGGAAGTCGATATTCTTCACCTTGATGGTGCCCACGACAATCGATT
CCTCATCCTTGACGATCACATTCTCCAAGGAAACAAAGTCGCGTTCTATC
TTTTGTCTAAATGATAGATAGTCTGAGGCTGGCTGCTTGAAGTCCACTGT
CCACTGATCCGGAGGATGTGGGCTGACCAGGCCCTGTGTAATTTGCTCCA
GAAACTTCATGCTCCAATATGGCGGCACATTCGAGGGTTCGGACATCACA
CGAACCTCGGTTAGCGATAGACCCTCATCATCAGCGAAGATCACATGCTT
TTT

BS12902.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9238-PA 993 CG9238-RA 307..993 703..17 3435 100 Minus
CG9238-PB 1155 CG9238-RB 469..1155 703..17 3435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Gbs-70E-RC 2846 CG9238-RC 978..1666 703..15 3445 100 Minus
Gbs-70E-RB 2737 CG9238-RB 978..1666 703..15 3445 100 Minus
Gbs-70E-RA 2084 CG9238-RA 816..1504 703..15 3445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14542354..14542669 193..508 1580 100 Plus
3L 28110227 3L 14542733..14542929 507..703 985 100 Plus
3L 28110227 3L 14542117..14542295 15..193 895 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:13:06 has no hits.

BS12902.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:45 Download gff for BS12902.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9238-PB 469..1155 17..703 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:50 Download gff for BS12902.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9238-RA 816..1510 8..703 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:18 Download gff for BS12902.3prime
Subject Subject Range Query Range Percent Splice Strand
Gbs-70E-RA 816..1510 8..703 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:18 Download gff for BS12902.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14542111..14542295 8..193 97 <- Plus
3L 14542355..14542667 194..506 100 <- Plus
3L 14542733..14542929 507..703 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:50 Download gff for BS12902.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14535211..14535395 8..193 97 <- Plus
arm_3L 14535455..14535767 194..506 100 <- Plus
arm_3L 14535833..14536029 507..703 100   Plus

BS12902.5prime Sequence

801 bp (655 high quality bases) assembled on 2006-10-13

> BS12902.5prime
GAAGTTATCAGTCGACATGGTCAACAACGCCTCGGCGGCGGTCCAGGGTC
AGGGTCCCAGTCAGCAGAAGGCGGGTGCCACGCCCCTGGGCGTGGGCAGT
CGTTCCGGACGGAGTTACCTGGAGCGAATGGCCTCGGCGCCGCTACTCAC
CAATCAGCCCAAATCCTGTCTCAGCCGCAAATCCTGCCTGCACAAATCCC
AGAACACTACAGCCAGTTCCGCAGATCTCTCGCCGACGGACACCGATGTC
GCGGACAGTGCCAGTCATAGCTGTATCTGCAGCAAGGATAGTGACAGCAA
CGGCGAAGTGAGCCGTGGCCCCAAAAAGCATGTGATCTTCGCTGATGATG
AGGGTCTATCGCTAACCGAGGTTCGTGTGATGTCCGAACCCTCGAATGTG
CCGCCATATTGGAGCATGAAGTTTCTGGAGCAAATTACACAGGGCCTGGT
CAGCCCACATCCTCCGGATCAGTGGACAGTGGACTTCAAGCAGCCAGCCT
CAGACTATCTATCATTTAGACAAAAGATAGAACGCGACTTTGTTTCCTTG
GAGAATGTGATCGTCAAGGATGAGGAATCGATTGTCGTGGGCACCATCAA
GGTGAAGAATATCGACTTCCAGAAGGAGATCATTGTCCGTGTGACCTGNG
ATGATTGGAAGAGCCAGCAGGATATCTTCTGTACATACGCCAGGGCCTAT
GGACCGGCTACTTGTGCTCATGTAGTCTTCGATACATTCTCCTTCAAAAT
CACCTTGCCGCCATCCTCCAAGCGCCTGGAATTCTGCATCTGCTATCGCA
C

BS12902.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9238-PB 1155 CG9238-RB 162..947 16..801 3911 99.8 Plus
CG9238-PA 993 CG9238-RA 1..785 17..801 3906 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
Gbs-70E-RC 2846 CG9238-RC 671..1456 16..801 3919 99.9 Plus
Gbs-70E-RB 2737 CG9238-RB 671..1456 16..801 3919 99.9 Plus
Gbs-70E-RA 2084 CG9238-RA 509..1294 16..801 3919 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14547117..14547413 312..16 1485 100 Minus
3L 28110227 3L 14542386..14542669 801..518 1409 99.6 Minus
3L 28110227 3L 14542733..14542941 519..311 1045 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:45:38 has no hits.

BS12902.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:46 Download gff for BS12902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9238-PB 159..947 10..801 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:30 Download gff for BS12902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9238-RA 506..1294 10..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:05 Download gff for BS12902.5prime
Subject Subject Range Query Range Percent Splice Strand
Gbs-70E-RA 506..1294 10..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:05 Download gff for BS12902.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14542386..14542667 520..801 99 <- Minus
3L 14542733..14542939 313..519 100 <- Minus
3L 14547117..14547416 10..312 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:30 Download gff for BS12902.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14535486..14535767 520..801 99 <- Minus
arm_3L 14535833..14536039 313..519 100 <- Minus
arm_3L 14540217..14540516 10..312 99   Minus

BS12902.complete Sequence

1025 bp assembled on 2006-11-01

GenBank Submission: FJ637329

> BS12902.complete
GAAGTTATCAGTCGACATGGTCAACAACGCCTCGGCGGCGGTCCAGGGTC
AGGGTCCCAGTCAGCAGAAGGCGGGTGCCACGCCCCTGGGCGTGGGCAGT
CGTTCCGGACGGAGTTACCTGGAGCGAATGGCCTCGGCGCCGCTACTCAC
CAATCAGCCCAAATCCTGTCTCAGCCGCAAATCCTGCCTGCACAAATCCC
AGAACACTACAGCCAGTTCCGCAGATCTCTCGCCGACGGACACCGATGTC
GCGGACAGTGCCAGTCATAGCTGTATCTGCAGCAAGGATAGTGACAGCAA
CGGCGAAGTGAGCCGTGGCCCCAAAAAGCATGTGATCTTCGCTGATGATG
AGGGTCTATCGCTAACCGAGGTTCGTGTGATGTCCGAACCCTCGAATGTG
CCGCCATATTGGAGCATGAAGTTTCTGGAGCAAATTACACAGGGCCTGGT
CAGCCCACATCCTCCGGATCAGTGGACAGTGGACTTCAAGCAGCCAGCCT
CAGACTATCTATCATTTAGACAAAAGATAGAACGCGACTTTGTTTCCTTG
GAGAATGTGATCGTCAAGGATGAGGAATCGATTGTCGTGGGCACCATCAA
GGTGAAGAATATCGACTTCCAGAAGGAGATCATTGTCCGTGTGACCTGGG
ATGATTGGAAGAGCCAGCAGGATATCTTCTGTACATACGCCAGGGCCTAT
GGACCGGCTACTTGTGCTCATGTAGTCTTCGATACATTCTCCTTCAAAAT
CACCTTGCCGCCATCCTCCAAGCGCCTGGAATTCTGCATCTGCTATCGCA
CCAACGAAACAGAATATTGGGATAATAATGATGGTAAAAACTACACCATT
AGCAAGCGATCGCCCTTTTATTACAACGCCTTGTCGCCCTATGATAAGGG
TCAGAATCGCAACTCGAGCCAGCAAATAAGGTCCACCCTGACCGATGCCT
TGGCCAAGGTGCAAGACCAAAATGGCTGGCACCAGGAGCCACATACGCCA
TATTGGTGAAAGCTTTCTAGACCAT

BS12902.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
Gbs-70E-RC 1155 CG9238-PC 162..1155 16..1009 4970 100 Plus
Gbs-70E-RB 1155 CG9238-PB 162..1155 16..1009 4970 100 Plus
Gbs-70E-RA 993 CG9238-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
Gbs-70E-RC 2846 CG9238-RC 671..1666 16..1011 4980 100 Plus
Gbs-70E-RB 2737 CG9238-RB 671..1666 16..1011 4980 100 Plus
Gbs-70E-RA 2084 CG9238-RA 509..1504 16..1011 4980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14542354..14542669 833..518 1580 100 Minus
3L 28110227 3L 14547117..14547413 312..16 1485 100 Minus
3L 28110227 3L 14542733..14542941 519..311 1045 100 Minus
3L 28110227 3L 14542117..14542295 1011..833 895 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:21:04 has no hits.

BS12902.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:23 Download gff for BS12902.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RB 159..1155 10..1009 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:32 Download gff for BS12902.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RB 664..1668 10..1018 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:37 Download gff for BS12902.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RA 510..1501 17..1008 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:24 Download gff for BS12902.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RB 664..1668 10..1018 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:21 Download gff for BS12902.complete
Subject Subject Range Query Range Percent Splice Strand
Gbs-70E-RA 510..1501 17..1008 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:21 Download gff for BS12902.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14542355..14542667 520..832 100 <- Minus
3L 14542733..14542939 313..519 100 <- Minus
3L 14547117..14547412 17..312 100   Minus
3L 14542120..14542295 833..1008 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:37 Download gff for BS12902.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14535455..14535767 520..832 100 <- Minus
arm_3L 14535220..14535395 833..1008 100 <- Minus
arm_3L 14535833..14536039 313..519 100 <- Minus
arm_3L 14540217..14540512 17..312 100   Minus

BS12902.pep Sequence

Translation from 16 to 1008

> BS12902.pep
MVNNASAAVQGQGPSQQKAGATPLGVGSRSGRSYLERMASAPLLTNQPKS
CLSRKSCLHKSQNTTASSADLSPTDTDVADSASHSCICSKDSDSNGEVSR
GPKKHVIFADDEGLSLTEVRVMSEPSNVPPYWSMKFLEQITQGLVSPHPP
DQWTVDFKQPASDYLSFRQKIERDFVSLENVIVKDEESIVVGTIKVKNID
FQKEIIVRVTWDDWKSQQDIFCTYARAYGPATCAHVVFDTFSFKITLPPS
SKRLEFCICYRTNETEYWDNNDGKNYTISKRSPFYYNALSPYDKGQNRNS
SQQIRSTLTDALAKVQDQNGWHQEPHTPYW*

BS12902.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Gbs-70E-PA 330 CG9238-PA 1..330 1..330 1761 100 Plus
Gbs-70E-PC 384 CG9238-PC 55..384 1..330 1761 100 Plus
Gbs-70E-PB 384 CG9238-PB 55..384 1..330 1761 100 Plus
Gbs-76A-PD 681 CG9619-PD 454..629 101..276 175 28.9 Plus
Gbs-76A-PC 681 CG9619-PC 454..629 101..276 175 28.9 Plus