Clone Sequence Records
BS12902.3prime Sequence
703 bp (690 high quality bases) assembled on 2006-10-13
> BS12902.3prime
ATGGTCTAGAAAGCTTTCACCAATATGGCGTATGTGGCTCCTGGTGCCAG
CCATTTTGGTCTTGCACCTTGGCCAAGGCATCGGTCAGGGTGGACCTTAT
TTGCTGGCTCGAGTTGCGATTCTGACCCTTATCATAGGGCGACAAGGCGT
TGTAATAAAAGGGCGATCGCTTGCTAATGGTGTAGTTTTTACCATCATTA
TTATCCCAATATTCTGTTTCGTTGGTGCGATAGCAGATGCAGAATTCCAG
GCGCTTGGAGGATGGCGGCAAGGTGATTTTGAAGGAGAATGTATCGAAGA
CTACATGAGCACAAGTAGCCGGTCCATAGGCCCTGGCGTATGTACAGAAG
ATATCCTGCTGGCTCTTCCAATCATCCCAGGTCACACGGACAATGATCTC
CTTCTGGAAGTCGATATTCTTCACCTTGATGGTGCCCACGACAATCGATT
CCTCATCCTTGACGATCACATTCTCCAAGGAAACAAAGTCGCGTTCTATC
TTTTGTCTAAATGATAGATAGTCTGAGGCTGGCTGCTTGAAGTCCACTGT
CCACTGATCCGGAGGATGTGGGCTGACCAGGCCCTGTGTAATTTGCTCCA
GAAACTTCATGCTCCAATATGGCGGCACATTCGAGGGTTCGGACATCACA
CGAACCTCGGTTAGCGATAGACCCTCATCATCAGCGAAGATCACATGCTT
TTT
BS12902.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9238-PA | 993 | CG9238-RA | 307..993 | 703..17 | 3435 | 100 | Minus |
CG9238-PB | 1155 | CG9238-RB | 469..1155 | 703..17 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbs-70E-RC | 2846 | CG9238-RC | 978..1666 | 703..15 | 3445 | 100 | Minus |
Gbs-70E-RB | 2737 | CG9238-RB | 978..1666 | 703..15 | 3445 | 100 | Minus |
Gbs-70E-RA | 2084 | CG9238-RA | 816..1504 | 703..15 | 3445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14542354..14542669 | 193..508 | 1580 | 100 | Plus |
3L | 28110227 | 3L | 14542733..14542929 | 507..703 | 985 | 100 | Plus |
3L | 28110227 | 3L | 14542117..14542295 | 15..193 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:13:06 has no hits.
BS12902.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:45 Download gff for
BS12902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9238-PB | 469..1155 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:50 Download gff for
BS12902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9238-RA | 816..1510 | 8..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:18 Download gff for
BS12902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbs-70E-RA | 816..1510 | 8..703 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:18 Download gff for
BS12902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14542111..14542295 | 8..193 | 97 | <- | Plus |
3L | 14542355..14542667 | 194..506 | 100 | <- | Plus |
3L | 14542733..14542929 | 507..703 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:50 Download gff for
BS12902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14535211..14535395 | 8..193 | 97 | <- | Plus |
arm_3L | 14535455..14535767 | 194..506 | 100 | <- | Plus |
arm_3L | 14535833..14536029 | 507..703 | 100 | | Plus |
BS12902.5prime Sequence
801 bp (655 high quality bases) assembled on 2006-10-13
> BS12902.5prime
GAAGTTATCAGTCGACATGGTCAACAACGCCTCGGCGGCGGTCCAGGGTC
AGGGTCCCAGTCAGCAGAAGGCGGGTGCCACGCCCCTGGGCGTGGGCAGT
CGTTCCGGACGGAGTTACCTGGAGCGAATGGCCTCGGCGCCGCTACTCAC
CAATCAGCCCAAATCCTGTCTCAGCCGCAAATCCTGCCTGCACAAATCCC
AGAACACTACAGCCAGTTCCGCAGATCTCTCGCCGACGGACACCGATGTC
GCGGACAGTGCCAGTCATAGCTGTATCTGCAGCAAGGATAGTGACAGCAA
CGGCGAAGTGAGCCGTGGCCCCAAAAAGCATGTGATCTTCGCTGATGATG
AGGGTCTATCGCTAACCGAGGTTCGTGTGATGTCCGAACCCTCGAATGTG
CCGCCATATTGGAGCATGAAGTTTCTGGAGCAAATTACACAGGGCCTGGT
CAGCCCACATCCTCCGGATCAGTGGACAGTGGACTTCAAGCAGCCAGCCT
CAGACTATCTATCATTTAGACAAAAGATAGAACGCGACTTTGTTTCCTTG
GAGAATGTGATCGTCAAGGATGAGGAATCGATTGTCGTGGGCACCATCAA
GGTGAAGAATATCGACTTCCAGAAGGAGATCATTGTCCGTGTGACCTGNG
ATGATTGGAAGAGCCAGCAGGATATCTTCTGTACATACGCCAGGGCCTAT
GGACCGGCTACTTGTGCTCATGTAGTCTTCGATACATTCTCCTTCAAAAT
CACCTTGCCGCCATCCTCCAAGCGCCTGGAATTCTGCATCTGCTATCGCA
C
BS12902.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9238-PB | 1155 | CG9238-RB | 162..947 | 16..801 | 3911 | 99.8 | Plus |
CG9238-PA | 993 | CG9238-RA | 1..785 | 17..801 | 3906 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbs-70E-RC | 2846 | CG9238-RC | 671..1456 | 16..801 | 3919 | 99.9 | Plus |
Gbs-70E-RB | 2737 | CG9238-RB | 671..1456 | 16..801 | 3919 | 99.9 | Plus |
Gbs-70E-RA | 2084 | CG9238-RA | 509..1294 | 16..801 | 3919 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14547117..14547413 | 312..16 | 1485 | 100 | Minus |
3L | 28110227 | 3L | 14542386..14542669 | 801..518 | 1409 | 99.6 | Minus |
3L | 28110227 | 3L | 14542733..14542941 | 519..311 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:45:38 has no hits.
BS12902.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:46 Download gff for
BS12902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9238-PB | 159..947 | 10..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:30 Download gff for
BS12902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9238-RA | 506..1294 | 10..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:05 Download gff for
BS12902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbs-70E-RA | 506..1294 | 10..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:05 Download gff for
BS12902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14542386..14542667 | 520..801 | 99 | <- | Minus |
3L | 14542733..14542939 | 313..519 | 100 | <- | Minus |
3L | 14547117..14547416 | 10..312 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:30 Download gff for
BS12902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14535486..14535767 | 520..801 | 99 | <- | Minus |
arm_3L | 14535833..14536039 | 313..519 | 100 | <- | Minus |
arm_3L | 14540217..14540516 | 10..312 | 99 | | Minus |
BS12902.complete Sequence
1025 bp assembled on 2006-11-01
GenBank Submission: FJ637329
> BS12902.complete
GAAGTTATCAGTCGACATGGTCAACAACGCCTCGGCGGCGGTCCAGGGTC
AGGGTCCCAGTCAGCAGAAGGCGGGTGCCACGCCCCTGGGCGTGGGCAGT
CGTTCCGGACGGAGTTACCTGGAGCGAATGGCCTCGGCGCCGCTACTCAC
CAATCAGCCCAAATCCTGTCTCAGCCGCAAATCCTGCCTGCACAAATCCC
AGAACACTACAGCCAGTTCCGCAGATCTCTCGCCGACGGACACCGATGTC
GCGGACAGTGCCAGTCATAGCTGTATCTGCAGCAAGGATAGTGACAGCAA
CGGCGAAGTGAGCCGTGGCCCCAAAAAGCATGTGATCTTCGCTGATGATG
AGGGTCTATCGCTAACCGAGGTTCGTGTGATGTCCGAACCCTCGAATGTG
CCGCCATATTGGAGCATGAAGTTTCTGGAGCAAATTACACAGGGCCTGGT
CAGCCCACATCCTCCGGATCAGTGGACAGTGGACTTCAAGCAGCCAGCCT
CAGACTATCTATCATTTAGACAAAAGATAGAACGCGACTTTGTTTCCTTG
GAGAATGTGATCGTCAAGGATGAGGAATCGATTGTCGTGGGCACCATCAA
GGTGAAGAATATCGACTTCCAGAAGGAGATCATTGTCCGTGTGACCTGGG
ATGATTGGAAGAGCCAGCAGGATATCTTCTGTACATACGCCAGGGCCTAT
GGACCGGCTACTTGTGCTCATGTAGTCTTCGATACATTCTCCTTCAAAAT
CACCTTGCCGCCATCCTCCAAGCGCCTGGAATTCTGCATCTGCTATCGCA
CCAACGAAACAGAATATTGGGATAATAATGATGGTAAAAACTACACCATT
AGCAAGCGATCGCCCTTTTATTACAACGCCTTGTCGCCCTATGATAAGGG
TCAGAATCGCAACTCGAGCCAGCAAATAAGGTCCACCCTGACCGATGCCT
TGGCCAAGGTGCAAGACCAAAATGGCTGGCACCAGGAGCCACATACGCCA
TATTGGTGAAAGCTTTCTAGACCAT
BS12902.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbs-70E-RC | 1155 | CG9238-PC | 162..1155 | 16..1009 | 4970 | 100 | Plus |
Gbs-70E-RB | 1155 | CG9238-PB | 162..1155 | 16..1009 | 4970 | 100 | Plus |
Gbs-70E-RA | 993 | CG9238-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbs-70E-RC | 2846 | CG9238-RC | 671..1666 | 16..1011 | 4980 | 100 | Plus |
Gbs-70E-RB | 2737 | CG9238-RB | 671..1666 | 16..1011 | 4980 | 100 | Plus |
Gbs-70E-RA | 2084 | CG9238-RA | 509..1504 | 16..1011 | 4980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14542354..14542669 | 833..518 | 1580 | 100 | Minus |
3L | 28110227 | 3L | 14547117..14547413 | 312..16 | 1485 | 100 | Minus |
3L | 28110227 | 3L | 14542733..14542941 | 519..311 | 1045 | 100 | Minus |
3L | 28110227 | 3L | 14542117..14542295 | 1011..833 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:21:04 has no hits.
BS12902.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:23 Download gff for
BS12902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9238-RB | 159..1155 | 10..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:32 Download gff for
BS12902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9238-RB | 664..1668 | 10..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:37 Download gff for
BS12902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9238-RA | 510..1501 | 17..1008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:24 Download gff for
BS12902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9238-RB | 664..1668 | 10..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:21 Download gff for
BS12902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbs-70E-RA | 510..1501 | 17..1008 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:21 Download gff for
BS12902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14542355..14542667 | 520..832 | 100 | <- | Minus |
3L | 14542733..14542939 | 313..519 | 100 | <- | Minus |
3L | 14547117..14547412 | 17..312 | 100 | | Minus |
3L | 14542120..14542295 | 833..1008 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:37 Download gff for
BS12902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14535455..14535767 | 520..832 | 100 | <- | Minus |
arm_3L | 14535220..14535395 | 833..1008 | 100 | <- | Minus |
arm_3L | 14535833..14536039 | 313..519 | 100 | <- | Minus |
arm_3L | 14540217..14540512 | 17..312 | 100 | | Minus |
BS12902.pep Sequence
Translation from 16 to 1008
> BS12902.pep
MVNNASAAVQGQGPSQQKAGATPLGVGSRSGRSYLERMASAPLLTNQPKS
CLSRKSCLHKSQNTTASSADLSPTDTDVADSASHSCICSKDSDSNGEVSR
GPKKHVIFADDEGLSLTEVRVMSEPSNVPPYWSMKFLEQITQGLVSPHPP
DQWTVDFKQPASDYLSFRQKIERDFVSLENVIVKDEESIVVGTIKVKNID
FQKEIIVRVTWDDWKSQQDIFCTYARAYGPATCAHVVFDTFSFKITLPPS
SKRLEFCICYRTNETEYWDNNDGKNYTISKRSPFYYNALSPYDKGQNRNS
SQQIRSTLTDALAKVQDQNGWHQEPHTPYW*
BS12902.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbs-70E-PA | 330 | CG9238-PA | 1..330 | 1..330 | 1761 | 100 | Plus |
Gbs-70E-PC | 384 | CG9238-PC | 55..384 | 1..330 | 1761 | 100 | Plus |
Gbs-70E-PB | 384 | CG9238-PB | 55..384 | 1..330 | 1761 | 100 | Plus |
Gbs-76A-PD | 681 | CG9619-PD | 454..629 | 101..276 | 175 | 28.9 | Plus |
Gbs-76A-PC | 681 | CG9619-PC | 454..629 | 101..276 | 175 | 28.9 | Plus |