Clone BS12903 Report

Search the DGRC for BS12903

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG42492-RA
Protein status:BS12903.pep: full length peptide match
Sequenced Size:2783

Clone Sequence Records

BS12903.3prime Sequence

811 bp (723 high quality bases) assembled on 2006-10-13

> BS12903.3prime
ATGGTCTAGAAAGCTTTTACTCCAGACGTGCCTTGTAGGTGGTCTTCCAG
ATCTCGGCGAGTGTCACGGCGCTGTGGAATCGATGGAAGATGCACAGCGG
CAGTGTGATGCGCTGGATGATCGACCAGGGCACGAAGCCGTAGAACTCCA
GCTGAACAGGATTGGCGAATACTTTTTGAGCTTCGAATGTGTAGATGGCG
AACATGGCCACGTTGCAGATGAGAAGGAACGTGACGATCTGGCGGCCCGG
CTTGCTCCGGTCGTGCTCCGGCAGGTGGACGCGACGGCGGGACACGTCCG
CGATGAACAGCAGCTGCAGGATCACCTGGAAGACGGCCACACCACCGGTG
GTCGTGACCAGCAGGCTGGGCTCGCTCTCCAGGACCTTCAGGCTACCGGC
GATAATGCTGAACACGGAGTAGGTGAACAGGCCGAAGGCCGAGATGCGCA
GCAAGATGTCGTTCAGATTGGACTGCTCCTCGCAGCGGAACTTCAGGTTT
TTGACCCTGATGAATCCCACAATAATGGCCAGAATGGCGAACGCCATCAG
GATGCAGTGGCTGGCGTCGGCGAGGTAAATGGCCAACAGCGAGAACTGCT
GATGGCGCACCAAGACGAAGAAGAGTATCAGGCAGATGAGGGCCCCGACC
AGCAGCAGGAGCCCGAAGAACAGGCCCTTCGACGAGCCGACGCAGTCGAC
GCGTCCGGATCGCGCCTGCTGCGCCATGGCAACCGCCCGCCGCGATAACA
TCACCTCCAGCCGATGCTCCCAATCCTCGTCGTTCATCCGGCCCCGATAG
CGGCCGATGTG

BS12903.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11473-PA 2751 CG11473-RA 1957..2751 811..17 3925 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42492-RA 4210 CG42492-RA 2201..2995 811..17 3945 99.7 Minus
CG42492-RC 4253 CG42492-RC 2796..3590 811..17 3945 99.7 Minus
CG42492-RG 4154 CG42492-RG 2685..3491 811..17 3815 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5629395..5629747 156..508 1765 100 Plus
X 23542271 X 5630023..5630328 506..811 1500 99.3 Plus
X 23542271 X 5628884..5629024 17..157 705 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:06:48 has no hits.

BS12903.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:46 Download gff for BS12903.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11473-PA 1957..2751 17..811 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:07:53 Download gff for BS12903.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42492-RC 2796..3593 13..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:26 Download gff for BS12903.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42492-RC 2796..3593 13..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:26 Download gff for BS12903.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5628881..5629024 13..157 98 <- Plus
X 5629397..5629745 158..506 100 <- Plus
X 5630024..5630328 507..811 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:07:53 Download gff for BS12903.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5522914..5523057 13..157 98 <- Plus
arm_X 5523430..5523778 158..506 100 <- Plus
arm_X 5524057..5524361 507..811 99   Plus

BS12903.5prime Sequence

770 bp (738 high quality bases) assembled on 2006-10-13

> BS12903.5prime
GAAGTTATCAGTCGACATGGGCGGCGGTGAAGTGAAGGTCGCTACCGTCG
ACGTCGAGGGCGGGGACAATATGGCCACCTTGCCGGTGTCCCGCTCGCAT
ACCGCCGGCAGCACCGACAGCGCCGAGAAGAACAACGCCGCCAACAAGGA
GATGGAACTCAAGAACGTCATGCCGCAGCCGCTGCAGAGGACATCGCTGT
TCATCGTGACCAGTCTGGTGTACGCGATCCTTCTGATCGTCGTGTGCATT
GCATACGTTATCAGCGATGTAACCACCCACCGACTGCCGGTTTTGTACTA
CGAGACATTCTTCACATATCTATACGGCGTCAGCATACTCTTCCTTCTCT
ACGTCTTCTGTTTCCTGCTGCAGGAGAGCTCTTGCTGCAATGGCGGCAAT
GGTGGCAGCAAACCGAAACCCCAGCCCAAGGAGAAGAAGTCGAAGAAAGC
CAAAAATGCCGATCCGGCCGATTCGAAGGATGCGAAGGGCTCTAAGGACT
CTGGCAAGGCAGCCAAGGGCGCCGCATATCAGGAAGCACCCGTGGACGCC
GAGGTGGCCGTCACTCCAAAGAATGTGCGCAAGCGCAAGACAACCCATAG
TGATCTGACGCACGGCAGCTTTTTCCTGCGAGTGGGAGCCATTGCTTTCG
GTTTGGGCGCCATGATCTATATTGGCCTGGAGTTTGGATCGTTCTTTGAG
ATACCCTTCGATTCGCCGTGTCATCACATCCTGATCGGCGTAAATCCGCT
GCTCCAGATGATCTTCACCT

BS12903.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11473-PA 2751 CG11473-RA 1..754 17..770 3770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG42492-RA 4210 CG42492-RA 245..998 17..770 3770 100 Plus
CG42492-RD 5914 CG42492-RD 713..1320 184..770 2700 96.4 Plus
CG42492-RE 6757 CG42492-RE 938..1540 189..770 2690 96.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5634241..5634427 374..188 935 100 Minus
X 23542271 X 5636221..5636394 190..17 870 100 Minus
X 23542271 X 5633870..5634029 533..374 800 100 Minus
X 23542271 X 5633141..5633272 770..639 645 99.2 Minus
X 23542271 X 5633354..5633468 644..530 575 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:10:24 has no hits.

BS12903.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:46 Download gff for BS12903.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11473-PA 1..754 17..770 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:06:38 Download gff for BS12903.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42492-RA 245..998 17..770 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:08:42 Download gff for BS12903.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42492-RA 245..998 17..770 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:08:42 Download gff for BS12903.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5633141..5633266 645..770 100 <- Minus
X 5633354..5633465 533..644 100 <- Minus
X 5633871..5634028 375..532 100 <- Minus
X 5634241..5634425 190..374 100 <- Minus
X 5636222..5636394 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:06:38 Download gff for BS12903.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5527174..5527299 645..770 100 <- Minus
arm_X 5527387..5527498 533..644 100 <- Minus
arm_X 5527904..5528061 375..532 100 <- Minus
arm_X 5528274..5528458 190..374 100 <- Minus
arm_X 5530255..5530427 17..189 100   Minus

BS12903.complete Sequence

2783 bp assembled on 2010-01-09

GenBank Submission: KX802193

> BS12903.complete
GAAGTTATCAGTCGACATGGGCGGCGGTGAAGTGAAGGTCGCTACCGTCG
ACGTCGAGGGCGGGGACAATATGGCCACCTTGCCGGTGTCCCGCTCGCAT
ACCGCCGGCAGCACCGACAGCGCCGAGAAGAACAACGCCGCCAACAAGGA
GATGGAACTCAAGAACGTCATGCCGCAGCCGCTGCAGAGGACATCGCTGT
TCATCGTGACCAGTCTGGTGTACGCGATCCTTCTGATCGTCGTGTGCATT
GCATACGTTATCAGCGATGTAACCACCCACCGACTGCCGGTTTTGTACTA
CGAGACATTCTTCACATATCTATACGGCGTCAGCATACTCTTCCTTCTCT
ACGTCTTCTGTTTCCTGCTGCAGGAGAGCTCTTGCTGCAATGGCGGCAAT
GGTGGCAGCAAACCGAAACCCCAGCCCAAGGAGAAGAAGTCGAAGAAAGC
CAAAAATGCCGATCCGGCCGATTCGAAGGATGCGAAGGGCTCTAAGGACT
CTGGCAAGGCAGCCAAGGGCGCCGCATATCAGGAAGCACCCGTGGACGCC
GAGGTGGCCGTCACTCCAAAGAATGTGCGCAAGCGCAAGACAACCCATAG
TGATCTGACGCACGGCAGCTTTTTCCTGCGAGTGGGAGCCATTGCTTTCG
GTTTGGGCGCCATGATCTATATTGGCCTGGAGTTTGGATCGTTCTTTGAG
ATACCCTTCGATTCGCCGTGTCATCACATCCTGATCGGCGTAAATCCGCT
GCTCCAGATGATCTTCACCTTCATGCAGATGTACTTTATATTCATGAATG
CCCGGCTGAACATCCATCGCTTCAAGGTGATCGCTCGCTTTGGCCTGATG
CATGTGGTGGCCACCAACATTTGCGTATGGATTCGCACCCTGGTTAAGGA
ATCGCTGCTGGAGATCACGATCTATCATCAGAAGAACGAGCCAGAGGCCG
GCGCCTCGTCCATAGCCCACTCGATTCGTCAGCACGCCCTGCGGCATGCG
GGCACCGTGCTGCGCACCCATGCGGGACCCAACAGCGAATTCGAGGTGCT
CGACGGCGAGGACATTCTGCCCAAGGATGTGTACAAGAGCGACAATGTGC
TATCCAAGCTGGTGCGCAATACCGTCGATGGTATTTCAAAGAGCCTGGGC
ATGGGCGGTGACCAGGCGCTAGACAGCAGCACCACCAGCAGCAGCACCAC
AACGACCACGCGAGCTCCGTTCACCACACCGAACTACCAATGGCACAGCA
CTACTATGGCCCGCAAGCTGAAGAAGTTTATCACCAGCGCCACCACCGCG
GCCACAACGGCGGCGGGCAGCAGCAGCACCGCCAGCAGTACCACCACCAT
TTCACCGACCATCAGTAGCACCACCATTCCGTCGACCACCATCAGTAGCA
CCACCATCTCATCGAGCACCACTTTCAGTCCATTTAGCCCCTCCACCACC
ACCACCACCACCACCACCGCTGCCGCCCTGAATCTCGAGACCAGCGGCAG
TGAATCGCCCTTCGGCGGCCTGCAGCGCATCCTCTCTAGCGCTGCGCCGC
CGAGCCTGGCGCCAGTCGATGGGTTCGGTTCCGCTTCCGCTGCCACGCCC
ACATCCGGTTCCGGCGCCGGCTCATTTGTAGACTCCTTCCTGGCCAGCAC
ACTAAGCCCGGCCAGCAGCACCGAGGGCTCGGCCAGCATTATGAACAACC
TTTTCGGCCAGGGACCCATGGAGAATAGCTTCCAGACATACACCGATCTG
GGCCACGAGGAGGCCACCGGTCTGGTGAGCTTCGAGAATCTAGAGAGTCT
GGACAACATATACCCGGCGGCGCTGTCCTCCAATATCGGCACACTCAACT
CCACCGCCTGCGGACGCATCGACATAATGGGCACCATTGTCTACGATTCG
GCGCCCTACCTCTATCCGTTCATCATCGAGTATTCGCTGATCGGGGCGGT
GGTGTTGTATGTCATGTGGAAGCACATCGGCCGCTATCCGGGCCGGATGA
ACGACGAGGATTTGGAGCATCGGCTGGAGGTGATGTTATCGCGGCGGGCG
GTTGCCATGGCGCAGCAGGCGCGATCCGGACGCGTCGACTGCGTCGGCTC
GTCGAAGGGCCTGTTCTTCGGGCTCCTGCTGCTGGTCGGGGCCCTCATCT
GCCTGATACTCTTCTTCGTCTTGGTGCGCCATCAGCAGTTCTCGCTGTTG
GCCATTTACCTCGCCGACGCCAGCCACTGCATCCTGATGGCGTTCGCCAT
TCTGGCCATTATTGTGGGATTCATCAGGGTCAAAAACCTGAAGTTCCGCT
GCGAGGAGCAGTCCAATCTGAACGACATCTTGCTGCGCATCTCGGCCTTC
GGCCTGTTCACCTACTCCGTGTTCAGCATTATCGCCGGTAGCCTGAAGGT
CCTGGAGAGCGAGCCCAGCCTGCTGGTCACGACCACCGGTGGTGTGGCCG
TCTTCCAGGTGATCCTGCAGCTGCTGTTCATCGCGGACGTGTCCCGCCGT
CGCGTCCACCTGCCGGAGCACGACCGGAGCAAGCCGGGCCGCCAGATCGT
CACGTTCCTTCTCATCTGCAACGTGGCCATGTTCGCCATCTACACATTCG
AAGCTCAAAAAGTATTCGCCAATCCTGTTCAGCTGGAGTTCTACGGCTTC
GTGCCCTGGTCGATCATCCAGCGCATCACACTGCCGCTGTGCATCTTCCA
TCGATTCCACAGCGCCGTGACACTCGCCGAGATCTGGAAGACCACCTACA
AGGCACGTCTGGAGTAAAAGCTTTCTAGACCAT

BS12903.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG42492-RA 2751 CG42492-PA 1..2751 17..2767 13755 100 Plus
CG42492-RC 2976 CG42492-PC 377..2976 189..2767 12650 99.2 Plus
CG42492-RE 2940 CG42492-PE 329..2940 189..2767 12495 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG42492-RA 4210 CG42492-RA 245..2995 17..2767 13755 100 Plus
CG42492-RC 4253 CG42492-RC 991..3590 189..2767 12650 99.2 Plus
CG42492-RE 6757 CG42492-RE 938..3549 189..2767 12495 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5630023..5631496 2278..805 7370 100 Minus
X 23542271 X 5629395..5629747 2628..2276 1765 100 Minus
X 23542271 X 5634241..5634427 374..188 935 100 Minus
X 23542271 X 5636221..5636394 190..17 870 100 Minus
X 23542271 X 5633106..5633272 805..639 820 99.4 Minus
X 23542271 X 5633870..5634029 533..374 800 100 Minus
X 23542271 X 5628884..5629024 2767..2627 705 100 Minus
X 23542271 X 5633354..5633468 644..530 575 100 Minus
Blast to na_te.dros performed 2014-11-28 02:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2489..2815 1173..1499 220 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6662..6928 1231..1489 214 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2309..2545 1173..1409 209 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6691..6944 1202..1453 201 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6943 1174..1395 191 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6907 1246..1428 176 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6884 1318..1468 161 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2511 1280..1468 156 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6927 1264..1466 150 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6926 1173..1300 133 58.8 Plus

BS12903.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:59 Download gff for BS12903.complete
Subject Subject Range Query Range Percent Splice Strand
CG42492-RA 241..2989 17..2765 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:47 Download gff for BS12903.complete
Subject Subject Range Query Range Percent Splice Strand
CG42492-RA 245..2993 17..2765 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:30 Download gff for BS12903.complete
Subject Subject Range Query Range Percent Splice Strand
CG11473-RA 241..2989 17..2765 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:05 Download gff for BS12903.complete
Subject Subject Range Query Range Percent Splice Strand
CG42492-RA 245..2993 17..2765 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:05 Download gff for BS12903.complete
Subject Subject Range Query Range Percent Splice Strand
X 5628886..5629024 2627..2765 100 <- Minus
X 5629397..5629745 2278..2626 100 <- Minus
X 5630024..5631495 806..2277 100 <- Minus
X 5633106..5633266 645..805 100 <- Minus
X 5633354..5633465 533..644 100 <- Minus
X 5633871..5634028 375..532 100 <- Minus
X 5634241..5634425 190..374 100 <- Minus
X 5636222..5636394 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:47 Download gff for BS12903.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5522919..5523057 2627..2765 100 <- Minus
arm_X 5523430..5523778 2278..2626 100 <- Minus
arm_X 5524057..5525528 806..2277 100 <- Minus
arm_X 5527139..5527299 645..805 100 <- Minus
arm_X 5527387..5527498 533..644 100 <- Minus
arm_X 5527904..5528061 375..532 100 <- Minus
arm_X 5528274..5528458 190..374 100 <- Minus
arm_X 5530255..5530427 17..189 100   Minus

BS12903.pep Sequence

Translation from 16 to 2766

> BS12903.pep
MGGGEVKVATVDVEGGDNMATLPVSRSHTAGSTDSAEKNNAANKEMELKN
VMPQPLQRTSLFIVTSLVYAILLIVVCIAYVISDVTTHRLPVLYYETFFT
YLYGVSILFLLYVFCFLLQESSCCNGGNGGSKPKPQPKEKKSKKAKNADP
ADSKDAKGSKDSGKAAKGAAYQEAPVDAEVAVTPKNVRKRKTTHSDLTHG
SFFLRVGAIAFGLGAMIYIGLEFGSFFEIPFDSPCHHILIGVNPLLQMIF
TFMQMYFIFMNARLNIHRFKVIARFGLMHVVATNICVWIRTLVKESLLEI
TIYHQKNEPEAGASSIAHSIRQHALRHAGTVLRTHAGPNSEFEVLDGEDI
LPKDVYKSDNVLSKLVRNTVDGISKSLGMGGDQALDSSTTSSSTTTTTRA
PFTTPNYQWHSTTMARKLKKFITSATTAATTAAGSSSTASSTTTISPTIS
STTIPSTTISSTTISSSTTFSPFSPSTTTTTTTTAAALNLETSGSESPFG
GLQRILSSAAPPSLAPVDGFGSASAATPTSGSGAGSFVDSFLASTLSPAS
STEGSASIMNNLFGQGPMENSFQTYTDLGHEEATGLVSFENLESLDNIYP
AALSSNIGTLNSTACGRIDIMGTIVYDSAPYLYPFIIEYSLIGAVVLYVM
WKHIGRYPGRMNDEDLEHRLEVMLSRRAVAMAQQARSGRVDCVGSSKGLF
FGLLLLVGALICLILFFVLVRHQQFSLLAIYLADASHCILMAFAILAIIV
GFIRVKNLKFRCEEQSNLNDILLRISAFGLFTYSVFSIIAGSLKVLESEP
SLLVTTTGGVAVFQVILQLLFIADVSRRRVHLPEHDRSKPGRQIVTFLLI
CNVAMFAIYTFEAQKVFANPVQLEFYGFVPWSIIQRITLPLCIFHRFHSA
VTLAEIWKTTYKARLE*

BS12903.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42492-PA 916 CG42492-PA 1..916 1..916 4648 100 Plus
CG42492-PC 991 CG42492-PC 127..991 59..916 4336 99.2 Plus
CG42492-PD 977 CG42492-PD 95..977 51..916 4325 97.6 Plus
CG42492-PG 958 CG42492-PG 89..958 58..916 4323 98.6 Plus
CG42492-PE 979 CG42492-PE 111..979 59..916 4321 98.7 Plus