Clone Sequence Records
BS12904.3prime Sequence
760 bp (673 high quality bases) assembled on 2006-10-13
> BS12904.3prime
ATGGTCTAGAAAGCTTCTACTCAATCTTGCCGAAGGGTGCCTCGCTGTTC
ACGGGGACATAGAAGTCACCCTCGACCATGTAGGCGTTGGTAATTGCTCC
CATGCGAACGCTGGAGTAGGTGCTTCCGCAGTTCTTGGCAACGGCATCCT
CGTAGTCATGGCACTTAATGGATCCAAAGTTGTCCTCGGTGACGGCCTCG
GCGTAGTAGAGAACGGAGCGTGCGTGAGAGCAGGATCCGGTGGCGTCCAG
TCCGCATCCGGGCTGGCTCTTGCCTCCATTGGGGTAGAAGGCTCCCTTGC
CGATGGGCTTCAGGAATCCCAGTTTGCCGCCGTTGGTCTGGATGGACTCT
ACGTAGTGGGCATCATCGGTGGATAGACGCTTAGCGGGCTTATCGTAGCT
GAAGAGGGGGAGGGCAGGATCCAGACCCACAATGGTGTGAACGCGCTTGT
CTCCGACGGTCTTTCCGGCGTATCCAGCAACATGGGCTCCCAGGCTGTGT
CCGATCACCTCCAAGCTATCGTAGTCCAAGCCGTGGTGGTCGTGCAGGTA
CTTGATCATCTCACCAACCTTGCCACCGGCTCCAGGAACAGCCAGAACGG
AAGAGGCGTAGTCCACGGATCGGGCACGGGCCCAGTCAACGACGATCACG
TTGTAGTCGCCCTTGGACAACCAGGCCTTGGTGATGCGGGTGTTCATGTC
GTCGGAGTACCTCTGGGTCCAGCCGTGGATGACGAAACGGGTGCCATGAT
CCTTGTTGAA
BS12904.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-PA | 1020 | CG6283-RA | 277..1020 | 760..17 | 3695 | 99.8 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 694..798 | 349..245 | 300 | 91.4 | Minus |
| CG6295-PA | 1017 | CG6295-RA | 712..779 | 322..255 | 290 | 97 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 951..1015 | 92..28 | 250 | 95.3 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 886..947 | 157..96 | 235 | 95.1 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 694..785 | 349..258 | 235 | 90.2 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 886..947 | 157..96 | 210 | 93.5 | Minus |
| CG17191-PA | 1014 | CG17191-RA | 922..980 | 109..51 | 195 | 93.2 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 382..434 | 664..612 | 190 | 94.3 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 951..1015 | 92..28 | 175 | 90.7 | Minus |
| CG17192-PA | 1014 | CG17192-RA | 592..641 | 439..390 | 175 | 94 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 388..440 | 658..606 | 165 | 92.4 | Minus |
| CG6295-PA | 1017 | CG6295-RA | 415..449 | 619..585 | 150 | 97.1 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 834..882 | 209..161 | 145 | 91.8 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 834..882 | 209..161 | 145 | 91.8 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 303..335 | 743..711 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-RA | 1083 | CG6283-RA | 302..1047 | 760..15 | 3715 | 99.9 | Minus |
| CG6277-RA | 1085 | CG6277-RA | 346..1050 | 730..23 | 1455 | 80.6 | Minus |
| CG6271-RA | 1072 | CG6271-RA | 324..1041 | 743..23 | 1450 | 80.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27020274..27021019 | 15..760 | 3715 | 99.9 | Plus |
| 3R | 32079331 | 3R | 27024999..27025716 | 23..743 | 1425 | 80.2 | Plus |
| 3R | 32079331 | 3R | 27022106..27022810 | 23..730 | 1420 | 80.4 | Plus |
| 3R | 32079331 | 3R | 27018659..27019319 | 16..676 | 920 | 75.9 | Plus |
| 3R | 32079331 | 3R | 27005982..27006607 | 51..676 | 805 | 75.2 | Plus |
| 3R | 32079331 | 3R | 27017226..27017878 | 30..682 | 700 | 73.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:19:04 has no hits.
BS12904.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:47 Download gff for
BS12904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-PA | 279..1020 | 17..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:40 Download gff for
BS12904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 302..1056 | 8..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:46 Download gff for
BS12904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 302..1056 | 8..760 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:46 Download gff for
BS12904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27020265..27021019 | 8..760 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:40 Download gff for
BS12904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22845987..22846741 | 8..760 | 99 | | Plus |
BS12904.5prime Sequence
778 bp (753 high quality bases) assembled on 2006-10-13
> BS12904.5prime
GAAGTTATCAGTCGACATGAAGGTGTTTTTTGTTCTTGCCGCCTTACTGG
CAGCCGTGAGTGCCCTGCCCATTGAGGAGCGCGTCAATGGAGAGAATGGC
TGGTTCATCCCCAAGCTTGATGGAAGCTTCGAGTGGATGGACATGCAGGA
TGCCGAGGATCTTCTGGCCAACGGAGCCCAGATGGAGGGCCGCATCAGCA
CCAACGCCGTGAACTTCTATGTCTACACCAAGTCGAACCCCACCGATGGC
AAGGAGATCAAGGCCAAGTCCGGCTCCGTCGAGGATTCCCACTTCAACAA
GGATCATGGCACCCGCTTCGTCATCCACGGCTGGACCCAGAGGTACTCCG
ACGACATGAACACCCGCATCACCAAGGCCTGGTTGTCCAAGGGCGACTAC
AACGTGATCGTCGTTGACTGGGCCCGTGCCCGATCCGTGGACTACGCCTC
TTCCGTTCTGGCTGTTCCTGGAGCCGGTGGCAAGGTTGGTGAGATGATCA
AGTACCTGCACGACCACCACGGCTTGGACTACGATAGCTTGGAGGTGATC
GGACACAGCCTGGGAGCCCATGTTGCTGGATACGCCGGAAAGACCGTCGG
AGACAAGCGCGTTCACACCATTGTGGGTCTGGATCCTGCCCTCCCCCTCT
TCAGCTACGATAAGCCCGCTAAGCGTCTATCCACCGATGATGCCCACTAC
GTAGAGTCCATCCAGACCAACGGCGGCAAACTGGGATTCCTGAAGCCCAT
CGGCAAGGGAGCCTTCTACCCCAATGGA
BS12904.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-PA | 1020 | CG6283-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
| CG6277-PA | 1026 | CG6277-RA | 694..764 | 704..774 | 230 | 92.9 | Plus |
| CG6295-PA | 1017 | CG6295-RA | 712..755 | 731..774 | 220 | 100 | Plus |
| CG6271-PA | 1026 | CG6271-RA | 694..764 | 704..774 | 205 | 91.5 | Plus |
| CG6271-PA | 1026 | CG6271-RA | 382..434 | 389..441 | 190 | 94.3 | Plus |
| CG17192-PA | 1014 | CG17192-RA | 592..641 | 614..663 | 175 | 94 | Plus |
| CG6277-PA | 1026 | CG6277-RA | 388..440 | 395..447 | 165 | 92.4 | Plus |
| CG6295-PA | 1017 | CG6295-RA | 415..449 | 434..468 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-RA | 1083 | CG6283-RA | 24..787 | 15..778 | 3820 | 100 | Plus |
| CG6277-RA | 1085 | CG6277-RA | 337..798 | 314..778 | 780 | 78.2 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 324..789 | 310..778 | 715 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27020534..27021256 | 778..56 | 3615 | 100 | Minus |
| 3R | 32079331 | 3R | 27022358..27022819 | 778..314 | 745 | 77.8 | Minus |
| 3R | 32079331 | 3R | 27025251..27025716 | 778..310 | 690 | 77 | Minus |
| 3R | 32079331 | 3R | 27017499..27017878 | 750..371 | 565 | 76.6 | Minus |
| 3R | 32079331 | 3R | 27018918..27019319 | 778..377 | 555 | 75.9 | Minus |
| 3R | 32079331 | 3R | 27006206..27006607 | 778..377 | 480 | 74.6 | Minus |
| 3R | 32079331 | 3R | 27021314..27021355 | 56..15 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 27019531..27019631 | 159..59 | 205 | 80.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:13:18 has no hits.
BS12904.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:47 Download gff for
BS12904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:57 Download gff for
BS12904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..786 | 15..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:57 Download gff for
BS12904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..786 | 15..777 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:57 Download gff for
BS12904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27020535..27021255 | 57..777 | 100 | <- | Minus |
| 3R | 27021314..27021355 | 15..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:57 Download gff for
BS12904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22846257..22846977 | 57..777 | 100 | <- | Minus |
| arm_3R | 22847036..22847077 | 15..56 | 100 | | Minus |
BS12904.complete Sequence
1052 bp assembled on 2006-11-01
GenBank Submission: FJ637330
> BS12904.complete
GAAGTTATCAGTCGACATGAAGGTGTTTTTTGTTCTTGCCGCCTTACTGG
CAGCCGTGAGTGCCCTGCCCATTGAGGAGCGCGTCAATGGAGAGAATGGC
TGGTTCATCCCCAAGCTTGATGGAAGCTTCGAGTGGATGGACATGCAGGA
TGCCGAGGATCTTCTGGCCAACGGAGCCCAGATGGAGGGCCGCATCAGCA
CCAACGCCGTGAACTTCTATGTCTACACCAAGTCGAACCCCACCGATGGC
AAGGAGATCAAGGCCAAGTCCGGCTCCGTCGAGGATTCCCACTTCAACAA
GGATCATGGCACCCGCTTCGTCATCCACGGCTGGACCCAGAGGTACTCCG
ACGACATGAACACCCGCATCACCAAGGCCTGGTTGTCCAAGGGCGACTAC
AACGTGATCGTCGTTGACTGGGCCCGTGCCCGATCCGTGGACTACGCCTC
TTCCGTTCTGGCTGTTCCTGGAGCCGGTGGCAAGGTTGGTGAGATGATCA
AGTACCTGCACGACCACCACGGCTTGGACTACGATAGCTTGGAGGTGATC
GGACACAGCCTGGGAGCCCATGTTGCTGGATACGCCGGAAAGACCGTCGG
AGACAAGCGCGTTCACACCATTGTGGGTCTGGATCCTGCCCTCCCCCTCT
TCAGCTACGATAAGCCCGCTAAGCGTCTATCCACCGATGATGCCCACTAC
GTAGAGTCCATCCAGACCAACGGCGGCAAACTGGGATTCCTGAAGCCCAT
CGGCAAGGGAGCCTTCTACCCCAATGGAGGCAAGAGCCAGCCCGGATGCG
GACTGGACGCCACCGGATCCTGCTCTCACGCACGCTCCGTTCTCTACTAC
GCCGAGGCCGTCACCGAGGACAACTTTGGATCCATTAAGTGCCATGACTA
CGAGGATGCCGTTGCCAAGAACTGCGGAAGCACCTACTCCAGCGTTCGCA
TGGGAGCAATTACCAACGCCTACATGGTCGAGGGTGACTTCTATGTCCCC
GTGAACAGCGAGGCACCCTTCGGCAAGATTGAGTAGAAGCTTTCTAGACC
AT
BS12904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-RA | 1020 | CG6283-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
| CG6277-RA | 1026 | CG6277-PA | 307..1020 | 314..1030 | 1435 | 80.3 | Plus |
| CG6271-RA | 1026 | CG6271-PA | 303..1020 | 310..1030 | 1410 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-RA | 1083 | CG6283-RA | 24..1047 | 15..1038 | 5120 | 100 | Plus |
| CG6277-RA | 1085 | CG6277-RA | 337..1050 | 314..1030 | 1435 | 80.3 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 324..1041 | 310..1030 | 1410 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27020274..27021256 | 1038..56 | 4915 | 100 | Minus |
| 3R | 32079331 | 3R | 27022106..27022819 | 1030..314 | 1435 | 80.3 | Minus |
| 3R | 32079331 | 3R | 27024999..27025716 | 1030..310 | 1410 | 80 | Minus |
| 3R | 32079331 | 3R | 27018659..27019319 | 1037..377 | 920 | 75.9 | Minus |
| 3R | 32079331 | 3R | 27005982..27006607 | 1002..377 | 805 | 75.2 | Minus |
| 3R | 32079331 | 3R | 27017226..27017878 | 1023..371 | 700 | 73.8 | Minus |
| 3R | 32079331 | 3R | 27021314..27021355 | 56..15 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 27019531..27019631 | 159..59 | 205 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:00:31 has no hits.
BS12904.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:25 Download gff for
BS12904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 1..1020 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:34 Download gff for
BS12904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..1056 | 15..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:02 Download gff for
BS12904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 26..1045 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:25 Download gff for
BS12904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..1056 | 15..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:43 Download gff for
BS12904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 26..1045 | 17..1036 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:43 Download gff for
BS12904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27020276..27021255 | 57..1036 | 100 | <- | Minus |
| 3R | 27021314..27021353 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:02 Download gff for
BS12904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22845998..22846977 | 57..1036 | 100 | <- | Minus |
| arm_3R | 22847036..22847075 | 17..56 | 100 | | Minus |
BS12904.pep Sequence
Translation from 16 to 1035
> BS12904.pep
MKVFFVLAALLAAVSALPIEERVNGENGWFIPKLDGSFEWMDMQDAEDLL
ANGAQMEGRISTNAVNFYVYTKSNPTDGKEIKAKSGSVEDSHFNKDHGTR
FVIHGWTQRYSDDMNTRITKAWLSKGDYNVIVVDWARARSVDYASSVLAV
PGAGGKVGEMIKYLHDHHGLDYDSLEVIGHSLGAHVAGYAGKTVGDKRVH
TIVGLDPALPLFSYDKPAKRLSTDDAHYVESIQTNGGKLGFLKPIGKGAF
YPNGGKSQPGCGLDATGSCSHARSVLYYAEAVTEDNFGSIKCHDYEDAVA
KNCGSTYSSVRMGAITNAYMVEGDFYVPVNSEAPFGKIE*
BS12904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-PA | 339 | CG6283-PA | 1..339 | 1..339 | 1802 | 100 | Plus |
| CG17191-PA | 337 | CG17191-PA | 1..337 | 1..339 | 1399 | 75.5 | Plus |
| CG17192-PA | 337 | CG17192-PA | 1..337 | 1..339 | 1282 | 69.3 | Plus |
| CG6277-PA | 341 | CG6277-PA | 1..340 | 1..338 | 1225 | 68.6 | Plus |
| CG6271-PA | 341 | CG6271-PA | 1..340 | 1..338 | 1224 | 68.6 | Plus |
