Clone BS12910 Report

Search the DGRC for BS12910

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG10465-RA
Protein status:BS12910.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12910.3prime Sequence

812 bp (766 high quality bases) assembled on 2006-10-13

> BS12910.3prime
ATGGTCTAGAAAGCTTTCAGGACGGATTATTACGCTTGTTGGATCGTAAT
CGCGCTAGTCCAGTGCGTTCTTCTTCCTCATCGCTTGTGTACTGATTAAT
GCTGGTTCCACTTGCACTTCCTACTCGTGCTGAAGACGTTGCCTGCATGA
GCTCTTGGTCTGGTGCATTGCGGTTTTCATAAAGCAAGACTTGTAGCGTT
TCTTCGTATATACGAGCTTCCGGAAATTCAACTTTAGTATGCTTTCTGTC
AGTTGCATAAACTATTGAAGTGCAACACACTTCAGCTACTTTTTTTCCGT
GTCCGTAAAATGACCAGCAGCAGATTTCACTTGGCCCAATTACGTCTTTA
ATAAACAAAATTCGTTCGTTAAAGCGCAAAGAAAGCTTATCAAATAATTC
AATATTTTTTAATAAGTTGTCGTCTGATGTACTTGTGTACGAATACTTGT
TATTCTGCCGCTGAACCACAAGAATAACAGCCGGCTTTAAAGAAACACTT
AATAAAAGCTGCTCTTCCTTTTGTGAAGTTATAAGTGGAATGCGGCAAAT
TGGCTTTGGCTCCTGATGAGCATATAGTGCCCGTTCACAAGAAATAGCTA
ACTCGGTAATGCAGTAGTATTTGGCTTCGGCAAGCAATTCTGCAATTTCC
TTGTTAGTTTCTGGTAATGGAACAGTGCCATCTCTTAAATAATTAAGAAT
GATACCAAAATGATTTCCACAGCGATCGATTAAAATCCATCCTTCCGAAT
CATTCAGCACTTCCATTCTACCCCTAAACATTGCGCTCAGCATTGTGTCA
TTGTTTTTCGTC

BS12910.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-PA 906 CG10465-RA 111..906 812..17 3930 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-RA 1241 CG10465-RA 364..1159 812..17 3950 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5339788..5340514 17..743 3635 100 Plus
2R 25286936 2R 5340561..5340632 741..812 330 97.2 Plus
Blast to na_te.dros performed on 2015-02-12 17:52:29 has no hits.

BS12910.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:50 Download gff for BS12910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-PA 111..906 17..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:15 Download gff for BS12910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 364..1162 10..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:40 Download gff for BS12910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 364..1162 10..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:40 Download gff for BS12910.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5339785..5340512 10..741 99 <- Plus
2R 5340562..5340632 742..812 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:15 Download gff for BS12910.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1227290..1228017 10..741 99 <- Plus
arm_2R 1228067..1228137 742..812 97   Plus

BS12910.5prime Sequence

775 bp (731 high quality bases) assembled on 2006-10-13

> BS12910.5prime
GAAGTTATCAGTCGACATGTCGGAATCAATGTCAGGTGATCACAAAATTT
TATTAAAAGGACATTCCTCCCAATATTTAAAACTTAATGTTGGTGGTCAT
TTATATTATACCACAATTGGAACACTGACGAAAAACAATGACACAATGCT
GAGCGCAATGTTTAGTGGTAGAATGGAAGTGCTGACTGATTCGGAAGGAT
GGATTTTAATCGATCGCTGTGGAAATCATTTTGGTATCATTCTTAATTAT
TTAAGAGATGGCACTGTTCCATTACCAGAAACTAACAAGGAAATTGCAGA
ATTGCTTGCCGAAGCCAAATACTACTGCATTACCGAGTTAGCTATTTCTT
GTGAACGGGCACTATATGCTCATCAGGAGCCAAAGCCAATTTGCCGCATT
CCACTTATAACTTCACAAAAGGAAGAGCAGCTTTTATTAAGTGTTTCTTT
AAAGCCGGCTGTTATTCTTGTGGTTCAGCGGCAGAATAACAAGTATTCGT
ACACAAGTACATCAGACGACAACTTATTAAAAAATATTGAATTATTTGAT
AAGCTTTCTTTGCGCTTTAACGAACGAATTTTGTTTATTAAAGACGTAAT
TGGGCCAAGTGAAATCTGCTGCTGGTCATTTTACGGACACGGAAAAAAAG
TAGCTGAAGTGTGTTGCACTTCAATAGTTTATGCAACTGACAGAAAGCAT
ACTAAAGTTGAATTTCCGGAAGCTCGTATATACGAAGAAACGCTACAAGT
CTTGCTTTATGAAAACCGCAATGCA

BS12910.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-PA 906 CG10465-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-RA 1241 CG10465-RA 254..1012 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5339935..5340514 775..196 2900 100 Minus
2R 25286936 2R 5340561..5340742 198..17 910 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:42:34 has no hits.

BS12910.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:51 Download gff for BS12910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-PA 1..758 17..774 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:34 Download gff for BS12910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 247..1011 10..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:41 Download gff for BS12910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 247..1011 10..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:41 Download gff for BS12910.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5339936..5340512 198..774 100 <- Minus
2R 5340562..5340749 10..197 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:34 Download gff for BS12910.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1227441..1228017 198..774 100 <- Minus
arm_2R 1228067..1228254 10..197 98   Minus

BS12910.complete Sequence

938 bp assembled on 2006-11-01

GenBank Submission: FJ637331

> BS12910.complete
GAAGTTATCAGTCGACATGTCGGAATCAATGTCAGGTGATCACAAAATTT
TATTAAAAGGACATTCCTCCCAATATTTAAAACTTAATGTTGGTGGTCAT
TTATATTATACCACAATTGGAACACTGACGAAAAACAATGACACAATGCT
GAGCGCAATGTTTAGTGGTAGAATGGAAGTGCTGACTGATTCGGAAGGAT
GGATTTTAATCGATCGCTGTGGAAATCATTTTGGTATCATTCTTAATTAT
TTAAGAGATGGCACTGTTCCATTACCAGAAACTAACAAGGAAATTGCAGA
ATTGCTTGCCGAAGCCAAATACTACTGCATTACCGAGTTAGCTATTTCTT
GTGAACGGGCACTATATGCTCATCAGGAGCCAAAGCCAATTTGCCGCATT
CCACTTATAACTTCACAAAAGGAAGAGCAGCTTTTATTAAGTGTTTCTTT
AAAGCCGGCTGTTATTCTTGTGGTTCAGCGGCAGAATAACAAGTATTCGT
ACACAAGTACATCAGACGACAACTTATTAAAAAATATTGAATTATTTGAT
AAGCTTTCTTTGCGCTTTAACGAACGAATTTTGTTTATTAAAGACGTAAT
TGGGCCAAGTGAAATCTGCTGCTGGTCATTTTACGGACACGGAAAAAAAG
TAGCTGAAGTGTGTTGCACTTCAATAGTTTATGCAACTGACAGAAAGCAT
ACTAAAGTTGAATTTCCGGAAGCTCGTATATACGAAGAAACGCTACAAGT
CTTGCTTTATGAAAACCGCAATGCACCAGACCAAGAGCTCATGCAGGCAA
CGTCTTCAGCACGAGTAGGAAGTGCAAGTGGAACCAGCATTAATCAGTAC
ACAAGCGATGAGGAAGAAGAACGCACTGGACTAGCGCGATTACGATCCAA
CAAGCGTAATAATCCGTCCTGAAAGCTTTCTAGACCAT

BS12910.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-RA 906 CG10465-PA 1..906 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-RA 1241 CG10465-RA 254..1159 17..922 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5339788..5340514 922..196 3635 100 Minus
2R 25286936 2R 5340561..5340742 198..17 910 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:01:45 has no hits.

BS12910.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:26 Download gff for BS12910.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 1..906 17..922 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:36 Download gff for BS12910.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 243..1158 10..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:54 Download gff for BS12910.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 254..1158 17..921 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:26 Download gff for BS12910.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 243..1158 10..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:43 Download gff for BS12910.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 254..1158 17..921 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:43 Download gff for BS12910.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5339789..5340512 198..921 100 <- Minus
2R 5340562..5340742 17..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:54 Download gff for BS12910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1227294..1228017 198..921 100 <- Minus
arm_2R 1228067..1228247 17..197 100   Minus

BS12910.pep Sequence

Translation from 16 to 921

> BS12910.pep
MSESMSGDHKILLKGHSSQYLKLNVGGHLYYTTIGTLTKNNDTMLSAMFS
GRMEVLTDSEGWILIDRCGNHFGIILNYLRDGTVPLPETNKEIAELLAEA
KYYCITELAISCERALYAHQEPKPICRIPLITSQKEEQLLLSVSLKPAVI
LVVQRQNNKYSYTSTSDDNLLKNIELFDKLSLRFNERILFIKDVIGPSEI
CCWSFYGHGKKVAEVCCTSIVYATDRKHTKVEFPEARIYEETLQVLLYEN
RNAPDQELMQATSSARVGSASGTSINQYTSDEEEERTGLARLRSNKRNNP
S*

BS12910.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-PA 301 CG10465-PA 1..301 1..301 1558 100 Plus
CG14647-PB 335 CG14647-PB 33..196 18..170 163 33.3 Plus
inc-PC 211 CG32810-PC 14..152 11..144 159 32.6 Plus
inc-PD 211 CG32810-PD 14..152 11..144 159 32.6 Plus
inc-PB 211 CG32810-PB 14..152 11..144 159 32.6 Plus