Clone Sequence Records
BS12910.3prime Sequence
812 bp (766 high quality bases) assembled on 2006-10-13
> BS12910.3prime
ATGGTCTAGAAAGCTTTCAGGACGGATTATTACGCTTGTTGGATCGTAAT
CGCGCTAGTCCAGTGCGTTCTTCTTCCTCATCGCTTGTGTACTGATTAAT
GCTGGTTCCACTTGCACTTCCTACTCGTGCTGAAGACGTTGCCTGCATGA
GCTCTTGGTCTGGTGCATTGCGGTTTTCATAAAGCAAGACTTGTAGCGTT
TCTTCGTATATACGAGCTTCCGGAAATTCAACTTTAGTATGCTTTCTGTC
AGTTGCATAAACTATTGAAGTGCAACACACTTCAGCTACTTTTTTTCCGT
GTCCGTAAAATGACCAGCAGCAGATTTCACTTGGCCCAATTACGTCTTTA
ATAAACAAAATTCGTTCGTTAAAGCGCAAAGAAAGCTTATCAAATAATTC
AATATTTTTTAATAAGTTGTCGTCTGATGTACTTGTGTACGAATACTTGT
TATTCTGCCGCTGAACCACAAGAATAACAGCCGGCTTTAAAGAAACACTT
AATAAAAGCTGCTCTTCCTTTTGTGAAGTTATAAGTGGAATGCGGCAAAT
TGGCTTTGGCTCCTGATGAGCATATAGTGCCCGTTCACAAGAAATAGCTA
ACTCGGTAATGCAGTAGTATTTGGCTTCGGCAAGCAATTCTGCAATTTCC
TTGTTAGTTTCTGGTAATGGAACAGTGCCATCTCTTAAATAATTAAGAAT
GATACCAAAATGATTTCCACAGCGATCGATTAAAATCCATCCTTCCGAAT
CATTCAGCACTTCCATTCTACCCCTAAACATTGCGCTCAGCATTGTGTCA
TTGTTTTTCGTC
BS12910.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-PA | 906 | CG10465-RA | 111..906 | 812..17 | 3930 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-RA | 1241 | CG10465-RA | 364..1159 | 812..17 | 3950 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5339788..5340514 | 17..743 | 3635 | 100 | Plus |
2R | 25286936 | 2R | 5340561..5340632 | 741..812 | 330 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:52:29 has no hits.
BS12910.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:50 Download gff for
BS12910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-PA | 111..906 | 17..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:15 Download gff for
BS12910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 364..1162 | 10..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:40 Download gff for
BS12910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 364..1162 | 10..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:40 Download gff for
BS12910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5339785..5340512 | 10..741 | 99 | <- | Plus |
2R | 5340562..5340632 | 742..812 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:15 Download gff for
BS12910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1227290..1228017 | 10..741 | 99 | <- | Plus |
arm_2R | 1228067..1228137 | 742..812 | 97 | | Plus |
BS12910.5prime Sequence
775 bp (731 high quality bases) assembled on 2006-10-13
> BS12910.5prime
GAAGTTATCAGTCGACATGTCGGAATCAATGTCAGGTGATCACAAAATTT
TATTAAAAGGACATTCCTCCCAATATTTAAAACTTAATGTTGGTGGTCAT
TTATATTATACCACAATTGGAACACTGACGAAAAACAATGACACAATGCT
GAGCGCAATGTTTAGTGGTAGAATGGAAGTGCTGACTGATTCGGAAGGAT
GGATTTTAATCGATCGCTGTGGAAATCATTTTGGTATCATTCTTAATTAT
TTAAGAGATGGCACTGTTCCATTACCAGAAACTAACAAGGAAATTGCAGA
ATTGCTTGCCGAAGCCAAATACTACTGCATTACCGAGTTAGCTATTTCTT
GTGAACGGGCACTATATGCTCATCAGGAGCCAAAGCCAATTTGCCGCATT
CCACTTATAACTTCACAAAAGGAAGAGCAGCTTTTATTAAGTGTTTCTTT
AAAGCCGGCTGTTATTCTTGTGGTTCAGCGGCAGAATAACAAGTATTCGT
ACACAAGTACATCAGACGACAACTTATTAAAAAATATTGAATTATTTGAT
AAGCTTTCTTTGCGCTTTAACGAACGAATTTTGTTTATTAAAGACGTAAT
TGGGCCAAGTGAAATCTGCTGCTGGTCATTTTACGGACACGGAAAAAAAG
TAGCTGAAGTGTGTTGCACTTCAATAGTTTATGCAACTGACAGAAAGCAT
ACTAAAGTTGAATTTCCGGAAGCTCGTATATACGAAGAAACGCTACAAGT
CTTGCTTTATGAAAACCGCAATGCA
BS12910.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-PA | 906 | CG10465-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-RA | 1241 | CG10465-RA | 254..1012 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5339935..5340514 | 775..196 | 2900 | 100 | Minus |
2R | 25286936 | 2R | 5340561..5340742 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:42:34 has no hits.
BS12910.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:51 Download gff for
BS12910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-PA | 1..758 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:34 Download gff for
BS12910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 247..1011 | 10..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:41 Download gff for
BS12910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 247..1011 | 10..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:41 Download gff for
BS12910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5339936..5340512 | 198..774 | 100 | <- | Minus |
2R | 5340562..5340749 | 10..197 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:34 Download gff for
BS12910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1227441..1228017 | 198..774 | 100 | <- | Minus |
arm_2R | 1228067..1228254 | 10..197 | 98 | | Minus |
BS12910.complete Sequence
938 bp assembled on 2006-11-01
GenBank Submission: FJ637331
> BS12910.complete
GAAGTTATCAGTCGACATGTCGGAATCAATGTCAGGTGATCACAAAATTT
TATTAAAAGGACATTCCTCCCAATATTTAAAACTTAATGTTGGTGGTCAT
TTATATTATACCACAATTGGAACACTGACGAAAAACAATGACACAATGCT
GAGCGCAATGTTTAGTGGTAGAATGGAAGTGCTGACTGATTCGGAAGGAT
GGATTTTAATCGATCGCTGTGGAAATCATTTTGGTATCATTCTTAATTAT
TTAAGAGATGGCACTGTTCCATTACCAGAAACTAACAAGGAAATTGCAGA
ATTGCTTGCCGAAGCCAAATACTACTGCATTACCGAGTTAGCTATTTCTT
GTGAACGGGCACTATATGCTCATCAGGAGCCAAAGCCAATTTGCCGCATT
CCACTTATAACTTCACAAAAGGAAGAGCAGCTTTTATTAAGTGTTTCTTT
AAAGCCGGCTGTTATTCTTGTGGTTCAGCGGCAGAATAACAAGTATTCGT
ACACAAGTACATCAGACGACAACTTATTAAAAAATATTGAATTATTTGAT
AAGCTTTCTTTGCGCTTTAACGAACGAATTTTGTTTATTAAAGACGTAAT
TGGGCCAAGTGAAATCTGCTGCTGGTCATTTTACGGACACGGAAAAAAAG
TAGCTGAAGTGTGTTGCACTTCAATAGTTTATGCAACTGACAGAAAGCAT
ACTAAAGTTGAATTTCCGGAAGCTCGTATATACGAAGAAACGCTACAAGT
CTTGCTTTATGAAAACCGCAATGCACCAGACCAAGAGCTCATGCAGGCAA
CGTCTTCAGCACGAGTAGGAAGTGCAAGTGGAACCAGCATTAATCAGTAC
ACAAGCGATGAGGAAGAAGAACGCACTGGACTAGCGCGATTACGATCCAA
CAAGCGTAATAATCCGTCCTGAAAGCTTTCTAGACCAT
BS12910.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-RA | 906 | CG10465-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-RA | 1241 | CG10465-RA | 254..1159 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5339788..5340514 | 922..196 | 3635 | 100 | Minus |
2R | 25286936 | 2R | 5340561..5340742 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:01:45 has no hits.
BS12910.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:26 Download gff for
BS12910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:36 Download gff for
BS12910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 243..1158 | 10..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:54 Download gff for
BS12910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 254..1158 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:26 Download gff for
BS12910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 243..1158 | 10..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:43 Download gff for
BS12910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 254..1158 | 17..921 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:43 Download gff for
BS12910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5339789..5340512 | 198..921 | 100 | <- | Minus |
2R | 5340562..5340742 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:54 Download gff for
BS12910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1227294..1228017 | 198..921 | 100 | <- | Minus |
arm_2R | 1228067..1228247 | 17..197 | 100 | | Minus |
BS12910.pep Sequence
Translation from 16 to 921
> BS12910.pep
MSESMSGDHKILLKGHSSQYLKLNVGGHLYYTTIGTLTKNNDTMLSAMFS
GRMEVLTDSEGWILIDRCGNHFGIILNYLRDGTVPLPETNKEIAELLAEA
KYYCITELAISCERALYAHQEPKPICRIPLITSQKEEQLLLSVSLKPAVI
LVVQRQNNKYSYTSTSDDNLLKNIELFDKLSLRFNERILFIKDVIGPSEI
CCWSFYGHGKKVAEVCCTSIVYATDRKHTKVEFPEARIYEETLQVLLYEN
RNAPDQELMQATSSARVGSASGTSINQYTSDEEEERTGLARLRSNKRNNP
S*
BS12910.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-PA | 301 | CG10465-PA | 1..301 | 1..301 | 1558 | 100 | Plus |
CG14647-PB | 335 | CG14647-PB | 33..196 | 18..170 | 163 | 33.3 | Plus |
inc-PC | 211 | CG32810-PC | 14..152 | 11..144 | 159 | 32.6 | Plus |
inc-PD | 211 | CG32810-PD | 14..152 | 11..144 | 159 | 32.6 | Plus |
inc-PB | 211 | CG32810-PB | 14..152 | 11..144 | 159 | 32.6 | Plus |