Clone Sequence Records
BS12911.3prime Sequence
486 bp (486 high quality bases) assembled on 2006-10-13
> BS12911.3prime
ATGGTCTAGAAAGCTTCTACTTGGCCTTGCGCTGGATTCCCACTTTGCCG
CCACACGAGCTGCAGTAAACGCCCTTGGTGGTCCACTCCCGATTGCAACC
GCACCAGGTGCACACGCAGCAGATCCAGAAGAGCGGAAAGATGCAGGATA
GCAGGCTGAGGCAGAAACTGGCGTCCTTGCAGCTGGCTGCTCTCATCACA
GCCGCCTCACTCCTCTCGCGGCACAGTGGACACAACAGCTTGTAGGTGGA
GGGCCCAACGGCGTAGTACCGGATGGATGGTTCCTGTTGGGCGGCGGAAA
GTGGAGCAGCTGACTGCTGGGGGATCAGGGTCACCTTCTCCGACGCATGA
TCATCGATGAAGGGCACCAGACCATCCTCCAGGACCACATTGGCAATAAT
ATTCCTGGCACGTTCCTCCGCCGTTCCGGCGGGCACCAATCTCACCCGTA
ACCTCTCCACCTGCTGCTCCATGTCGACTGATAACT
BS12911.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-PA | 456 | CG3746-RA | 1..456 | 472..17 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-RB | 692 | CG3746-RB | 14..470 | 473..17 | 2285 | 100 | Minus |
CG3746-RA | 569 | CG3746-RA | 14..470 | 473..17 | 2285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22649408..22649737 | 144..473 | 1650 | 100 | Plus |
2R | 25286936 | 2R | 22649217..22649348 | 17..148 | 645 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:01:52 has no hits.
BS12911.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:51 Download gff for
BS12911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:50 Download gff for
BS12911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 6..470 | 17..481 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:09 Download gff for
BS12911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 6..470 | 17..481 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:09 Download gff for
BS12911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22649217..22649343 | 17..143 | 100 | <- | Plus |
2R | 22649408..22649745 | 144..481 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:50 Download gff for
BS12911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18536722..18536848 | 17..143 | 100 | <- | Plus |
arm_2R | 18536913..18537250 | 144..481 | 99 | | Plus |
BS12911.5prime Sequence
486 bp (486 high quality bases) assembled on 2006-10-13
> BS12911.5prime
GAAGTTATCAGTCGACATGGAGCAGCAGGTGGAGAGGTTACGGGTGAGAT
TGGTGCCCGCCGGAACGGCGGAGGAACGTGCCAGGAATATTATTGCCAAT
GTGGTCCTGGAGGATGGTCTGGTGCCCTTCATCGATGATCATGCGTCGGA
GAAGGTGACCCTGATCCCCCAGCAGTCAGCTGCTCCACTTTCCGCCGCCC
AACAGGAACCATCCATCCGGTACTACGCCGTTGGGCCCTCCACCTACAAG
CTGTTGTGTCCACTGTGCCGCGAGAGGAGTGAGGCGGCTGTGATGAGAGC
AGCCAGCTGCAAGGACGCCAGTTTCTGCCTCAGCCTGCTATCCTGCATCT
TTCCGCTCTTCTGGATCTGCTGCGTGTGCACCTGGTGCGGTTGCAATCGG
GAGTGGACCACCAAGGGCGTTTACTGCAGCTCGTGTGGCGGCAAAGTGGG
AATCCAGCGCAAGGCCAAGTAGAAGCTTTCTAGACC
BS12911.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-PA | 456 | CG3746-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-RB | 692 | CG3746-RB | 14..470 | 16..472 | 2285 | 100 | Plus |
CG3746-RA | 569 | CG3746-RA | 14..470 | 16..472 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22649408..22649737 | 345..16 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 22649217..22649348 | 472..341 | 645 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:19:53 has no hits.
BS12911.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:51 Download gff for
BS12911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:38 Download gff for
BS12911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 6..470 | 8..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:01 Download gff for
BS12911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 6..470 | 8..472 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:01 Download gff for
BS12911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22649217..22649343 | 346..472 | 100 | <- | Minus |
2R | 22649408..22649745 | 8..345 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:38 Download gff for
BS12911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18536722..18536848 | 346..472 | 100 | <- | Minus |
arm_2R | 18536913..18537250 | 8..345 | 99 | | Minus |
BS12911.complete Sequence
488 bp assembled on 2006-11-01
GenBank Submission: FJ637332
> BS12911.complete
GAAGTTATCAGTCGACATGGAGCAGCAGGTGGAGAGGTTACGGGTGAGAT
TGGTGCCCGCCGGAACGGCGGAGGAACGTGCCAGGAATATTATTGCCAAT
GTGGTCCTGGAGGATGGTCTGGTGCCCTTCATCGATGATCATGCGTCGGA
GAAGGTGACCCTGATCCCCCAGCAGTCAGCTGCTCCACTTTCCGCCGCCC
AACAGGAACCATCCATCCGGTACTACGCCGTTGGGCCCTCCACCTACAAG
CTGTTGTGTCCACTGTGCCGCGAGAGGAGTGAGGCGGCTGTGATGAGAGC
AGCCAGCTGCAAGGACGCCAGTTTCTGCCTCAGCCTGCTATCCTGCATCT
TTCCGCTCTTCTGGATCTGCTGCGTGTGCACCTGGTGCGGTTGCAATCGG
GAGTGGACCACCAAGGGCGTTTACTGCAGCTCGTGTGGCGGCAAAGTGGG
AATCCAGCGCAAGGCCAAGTAGAAGCTTTCTAGACCAT
BS12911.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-RB | 456 | CG3746-PB | 1..456 | 17..472 | 2280 | 100 | Plus |
CG3746-RA | 456 | CG3746-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-RB | 692 | CG3746-RB | 14..470 | 16..472 | 2285 | 100 | Plus |
CG3746-RA | 569 | CG3746-RA | 14..470 | 16..472 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22649408..22649737 | 345..16 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 22649217..22649348 | 472..341 | 645 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:17:39 has no hits.
BS12911.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:27 Download gff for
BS12911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:51 Download gff for
BS12911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 1..466 | 11..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:22 Download gff for
BS12911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 15..470 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:27 Download gff for
BS12911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 1..466 | 11..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:54 Download gff for
BS12911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 15..470 | 17..472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:54 Download gff for
BS12911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22649217..22649343 | 346..472 | 100 | <- | Minus |
2R | 22649408..22649736 | 17..345 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:22 Download gff for
BS12911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18536722..18536848 | 346..472 | 100 | <- | Minus |
arm_2R | 18536913..18537241 | 17..345 | 100 | | Minus |
BS12911.pep Sequence
Translation from 16 to 471
> BS12911.pep
MEQQVERLRVRLVPAGTAEERARNIIANVVLEDGLVPFIDDHASEKVTLI
PQQSAAPLSAAQQEPSIRYYAVGPSTYKLLCPLCRERSEAAVMRAASCKD
ASFCLSLLSCIFPLFWICCVCTWCGCNREWTTKGVYCSSCGGKVGIQRKA
K*
BS12911.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-PB | 151 | CG3746-PB | 1..151 | 1..151 | 806 | 100 | Plus |
CG3746-PA | 151 | CG3746-PA | 1..151 | 1..151 | 806 | 100 | Plus |
CG43326-PB | 123 | CG43326-PB | 23..117 | 53..145 | 155 | 35.1 | Plus |
CG43326-PA | 123 | CG30217-PB | 23..117 | 53..145 | 155 | 35.1 | Plus |