Clone BS12911 Report

Search the DGRC for BS12911

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG3746-RA
Protein status:BS12911.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12911.3prime Sequence

486 bp (486 high quality bases) assembled on 2006-10-13

> BS12911.3prime
ATGGTCTAGAAAGCTTCTACTTGGCCTTGCGCTGGATTCCCACTTTGCCG
CCACACGAGCTGCAGTAAACGCCCTTGGTGGTCCACTCCCGATTGCAACC
GCACCAGGTGCACACGCAGCAGATCCAGAAGAGCGGAAAGATGCAGGATA
GCAGGCTGAGGCAGAAACTGGCGTCCTTGCAGCTGGCTGCTCTCATCACA
GCCGCCTCACTCCTCTCGCGGCACAGTGGACACAACAGCTTGTAGGTGGA
GGGCCCAACGGCGTAGTACCGGATGGATGGTTCCTGTTGGGCGGCGGAAA
GTGGAGCAGCTGACTGCTGGGGGATCAGGGTCACCTTCTCCGACGCATGA
TCATCGATGAAGGGCACCAGACCATCCTCCAGGACCACATTGGCAATAAT
ATTCCTGGCACGTTCCTCCGCCGTTCCGGCGGGCACCAATCTCACCCGTA
ACCTCTCCACCTGCTGCTCCATGTCGACTGATAACT

BS12911.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-PA 456 CG3746-RA 1..456 472..17 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-RB 692 CG3746-RB 14..470 473..17 2285 100 Minus
CG3746-RA 569 CG3746-RA 14..470 473..17 2285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22649408..22649737 144..473 1650 100 Plus
2R 25286936 2R 22649217..22649348 17..148 645 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 04:01:52 has no hits.

BS12911.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:51 Download gff for BS12911.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:50 Download gff for BS12911.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 6..470 17..481 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:09 Download gff for BS12911.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 6..470 17..481 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:09 Download gff for BS12911.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22649217..22649343 17..143 100 <- Plus
2R 22649408..22649745 144..481 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:50 Download gff for BS12911.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18536722..18536848 17..143 100 <- Plus
arm_2R 18536913..18537250 144..481 99   Plus

BS12911.5prime Sequence

486 bp (486 high quality bases) assembled on 2006-10-13

> BS12911.5prime
GAAGTTATCAGTCGACATGGAGCAGCAGGTGGAGAGGTTACGGGTGAGAT
TGGTGCCCGCCGGAACGGCGGAGGAACGTGCCAGGAATATTATTGCCAAT
GTGGTCCTGGAGGATGGTCTGGTGCCCTTCATCGATGATCATGCGTCGGA
GAAGGTGACCCTGATCCCCCAGCAGTCAGCTGCTCCACTTTCCGCCGCCC
AACAGGAACCATCCATCCGGTACTACGCCGTTGGGCCCTCCACCTACAAG
CTGTTGTGTCCACTGTGCCGCGAGAGGAGTGAGGCGGCTGTGATGAGAGC
AGCCAGCTGCAAGGACGCCAGTTTCTGCCTCAGCCTGCTATCCTGCATCT
TTCCGCTCTTCTGGATCTGCTGCGTGTGCACCTGGTGCGGTTGCAATCGG
GAGTGGACCACCAAGGGCGTTTACTGCAGCTCGTGTGGCGGCAAAGTGGG
AATCCAGCGCAAGGCCAAGTAGAAGCTTTCTAGACC

BS12911.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-PA 456 CG3746-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-RB 692 CG3746-RB 14..470 16..472 2285 100 Plus
CG3746-RA 569 CG3746-RA 14..470 16..472 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22649408..22649737 345..16 1650 100 Minus
2R 25286936 2R 22649217..22649348 472..341 645 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 11:19:53 has no hits.

BS12911.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:51 Download gff for BS12911.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:38 Download gff for BS12911.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 6..470 8..472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:01 Download gff for BS12911.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 6..470 8..472 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:01 Download gff for BS12911.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22649217..22649343 346..472 100 <- Minus
2R 22649408..22649745 8..345 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:38 Download gff for BS12911.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18536722..18536848 346..472 100 <- Minus
arm_2R 18536913..18537250 8..345 99   Minus

BS12911.complete Sequence

488 bp assembled on 2006-11-01

GenBank Submission: FJ637332

> BS12911.complete
GAAGTTATCAGTCGACATGGAGCAGCAGGTGGAGAGGTTACGGGTGAGAT
TGGTGCCCGCCGGAACGGCGGAGGAACGTGCCAGGAATATTATTGCCAAT
GTGGTCCTGGAGGATGGTCTGGTGCCCTTCATCGATGATCATGCGTCGGA
GAAGGTGACCCTGATCCCCCAGCAGTCAGCTGCTCCACTTTCCGCCGCCC
AACAGGAACCATCCATCCGGTACTACGCCGTTGGGCCCTCCACCTACAAG
CTGTTGTGTCCACTGTGCCGCGAGAGGAGTGAGGCGGCTGTGATGAGAGC
AGCCAGCTGCAAGGACGCCAGTTTCTGCCTCAGCCTGCTATCCTGCATCT
TTCCGCTCTTCTGGATCTGCTGCGTGTGCACCTGGTGCGGTTGCAATCGG
GAGTGGACCACCAAGGGCGTTTACTGCAGCTCGTGTGGCGGCAAAGTGGG
AATCCAGCGCAAGGCCAAGTAGAAGCTTTCTAGACCAT

BS12911.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-RB 456 CG3746-PB 1..456 17..472 2280 100 Plus
CG3746-RA 456 CG3746-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-RB 692 CG3746-RB 14..470 16..472 2285 100 Plus
CG3746-RA 569 CG3746-RA 14..470 16..472 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22649408..22649737 345..16 1650 100 Minus
2R 25286936 2R 22649217..22649348 472..341 645 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 00:17:39 has no hits.

BS12911.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:27 Download gff for BS12911.complete
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:51 Download gff for BS12911.complete
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 1..466 11..472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:22 Download gff for BS12911.complete
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 15..470 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:27 Download gff for BS12911.complete
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 1..466 11..472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:54 Download gff for BS12911.complete
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 15..470 17..472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:54 Download gff for BS12911.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22649217..22649343 346..472 100 <- Minus
2R 22649408..22649736 17..345 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:22 Download gff for BS12911.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18536722..18536848 346..472 100 <- Minus
arm_2R 18536913..18537241 17..345 100   Minus

BS12911.pep Sequence

Translation from 16 to 471

> BS12911.pep
MEQQVERLRVRLVPAGTAEERARNIIANVVLEDGLVPFIDDHASEKVTLI
PQQSAAPLSAAQQEPSIRYYAVGPSTYKLLCPLCRERSEAAVMRAASCKD
ASFCLSLLSCIFPLFWICCVCTWCGCNREWTTKGVYCSSCGGKVGIQRKA
K*

BS12911.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-PB 151 CG3746-PB 1..151 1..151 806 100 Plus
CG3746-PA 151 CG3746-PA 1..151 1..151 806 100 Plus
CG43326-PB 123 CG43326-PB 23..117 53..145 155 35.1 Plus
CG43326-PA 123 CG30217-PB 23..117 53..145 155 35.1 Plus