Clone Sequence Records
BS12913.5prime Sequence
513 bp (513 high quality bases) assembled on 2006-10-13
> BS12913.5prime
GAAGTTATCAGTCGACATGACGTGGGCAGATACCGCGAAGTTGAACGCCG
AAAGTGGACTCCCCAAAACCAGGCCACGCTGGATCACGTCTCGTGAGTTT
CCTTCGGTGAGCAGGTCATGCCCTTCGTGCACATCCTGGACTTGGCTGAC
TCTGGCGCGATCAAGCCGCACGTGGACAACACTCGATTTTGCGGCAACAC
CACTGCGGGCATTAGCATGCTCAGCGACTGAAGCGCGTGACCAAGGATCC
CATGACTTTGTCAGCCACTCTGAGGATCTGCTCCTGCCGCAACTCTCGCT
CTATATTAAGAGTGCCCTAGCGCGATACGAGTTCACCCACGAAATCCTGG
CCAGAGATCAGTCGTGGTTCAAGGAGCGCTTGGTCGAAACGAACCTTGAT
GGCATACGCATAGTTTCCTTTTCTCACAGCTGGTGTACATGTATATATAT
ATATATATACAATGAAAATTTATTCCGGTTTGGTGATCAGCTAATGTAAA
AGCTTTCTAGACC
BS12913.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-PA | 483 | CG14798-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
CG14798-PB | 714 | CG14798-RB | 244..714 | 29..499 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-RA | 898 | CG14798-RA | 270..752 | 17..499 | 2415 | 100 | Plus |
a6-RC | 2047 | CG3771-RC | 1965..2047 | 499..417 | 415 | 100 | Minus |
a6-RB | 2218 | CG3771-RB | 2136..2218 | 499..417 | 415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1693385..1693697 | 187..499 | 1565 | 100 | Plus |
X | 23542271 | X | 1693162..1693323 | 25..186 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:37:29 has no hits.
BS12913.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:52 Download gff for
BS12913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-PA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:16 Download gff for
BS12913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 267..752 | 11..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:39 Download gff for
BS12913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 267..752 | 11..499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:39 Download gff for
BS12913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1693158..1693323 | 21..186 | 98 | -> | Plus |
X | 1693385..1693697 | 187..499 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:16 Download gff for
BS12913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1587191..1587356 | 21..186 | 98 | -> | Plus |
arm_X | 1587418..1587730 | 187..499 | 100 | | Plus |
BS12913.3prime Sequence
513 bp (513 high quality bases) assembled on 2006-10-13
> BS12913.3prime
ATGGTCTAGAAAGCTTTTACATTAGCTGATCACCAAACCGGAATAAATTT
TCATTGTATATATATATATATATACATGTACACCAGCTGTGAGAAAAGGA
AACTATGCGTATGCCATCAAGGTTCGTTTCGACCAAGCGCTCCTTGAACC
ACGACTGATCTCTGGCCAGGATTTCGTGGGTGAACTCGTATCGCGCTAGG
GCACTCTTAATATAGAGCGAGAGTTGCGGCAGGAGCAGATCCTCAGAGTG
GCTGACAAAGTCATGGGATCCTTGGTCACGCGCTTCAGTCGCTGAGCATG
CTAATGCCCGCAGTGGTGTTGCCGCAAAATCGAGTGTTGTCCACGTGCGG
CTTGATCGCGCCAGAGTCAGCCAAGTCCAGGATGTGCACGAAGGGCATGA
CCTGCTCACCGAAGGAAACTCACGAGACGTGATCCAGCGTGGCCTGGTTT
TGGGGAGTCCACTTTCGGCGTTCAACTTCGCGGTATCTGCCCACGTCATG
TCGACTGATAACT
BS12913.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-PA | 483 | CG14798-RA | 1..483 | 499..17 | 2415 | 100 | Minus |
CG14798-PB | 714 | CG14798-RB | 244..714 | 487..17 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-RA | 898 | CG14798-RA | 270..752 | 499..17 | 2415 | 100 | Minus |
a6-RC | 2047 | CG3771-RC | 1965..2047 | 17..99 | 415 | 100 | Plus |
a6-RB | 2218 | CG3771-RB | 2136..2218 | 17..99 | 415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1693385..1693697 | 329..17 | 1565 | 100 | Minus |
X | 23542271 | X | 1693162..1693323 | 491..330 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:20:56 has no hits.
BS12913.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:52 Download gff for
BS12913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-PA | 1..483 | 17..499 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:14 Download gff for
BS12913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 267..752 | 17..505 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:13 Download gff for
BS12913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 267..752 | 17..505 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:13 Download gff for
BS12913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1693158..1693323 | 330..495 | 98 | -> | Minus |
X | 1693385..1693697 | 17..329 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:14 Download gff for
BS12913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1587191..1587356 | 330..495 | 98 | -> | Minus |
arm_X | 1587418..1587730 | 17..329 | 100 | | Minus |
BS12913.complete Sequence
515 bp assembled on 2006-11-01
GenBank Submission: FJ637333
> BS12913.complete
GAAGTTATCAGTCGACATGACGTGGGCAGATACCGCGAAGTTGAACGCCG
AAAGTGGACTCCCCAAAACCAGGCCACGCTGGATCACGTCTCGTGAGTTT
CCTTCGGTGAGCAGGTCATGCCCTTCGTGCACATCCTGGACTTGGCTGAC
TCTGGCGCGATCAAGCCGCACGTGGACAACACTCGATTTTGCGGCAACAC
CACTGCGGGCATTAGCATGCTCAGCGACTGAAGCGCGTGACCAAGGATCC
CATGACTTTGTCAGCCACTCTGAGGATCTGCTCCTGCCGCAACTCTCGCT
CTATATTAAGAGTGCCCTAGCGCGATACGAGTTCACCCACGAAATCCTGG
CCAGAGATCAGTCGTGGTTCAAGGAGCGCTTGGTCGAAACGAACCTTGAT
GGCATACGCATAGTTTCCTTTTCTCACAGCTGGTGTACATGTATATATAT
ATATATATACAATGAAAATTTATTCCGGTTTGGTGATCAGCTAATGTAAA
AGCTTTCTAGACCAT
BS12913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-RA | 483 | CG14798-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-RA | 898 | CG14798-RA | 270..752 | 17..499 | 2415 | 100 | Plus |
a6-RC | 2047 | CG3771-RC | 1965..2047 | 499..417 | 415 | 100 | Minus |
a6-RB | 2218 | CG3771-RB | 2136..2218 | 499..417 | 415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1693385..1693697 | 187..499 | 1565 | 100 | Plus |
X | 23542271 | X | 1693162..1693323 | 25..186 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:30:49 has no hits.
BS12913.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:28 Download gff for
BS12913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:37 Download gff for
BS12913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 255..740 | 11..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:16 Download gff for
BS12913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 270..750 | 17..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:28 Download gff for
BS12913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 255..740 | 11..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:40 Download gff for
BS12913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 270..750 | 17..497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:40 Download gff for
BS12913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1693158..1693323 | 21..186 | 98 | -> | Plus |
X | 1693385..1693695 | 187..497 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:16 Download gff for
BS12913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1587191..1587356 | 21..186 | 98 | -> | Plus |
arm_X | 1587418..1587728 | 187..497 | 100 | | Plus |
BS12913.pep Sequence
Translation from 16 to 498
> BS12913.pep
MTWADTAKLNAESGLPKTRPRWITSREFPSVSRSCPSCTSWTWLTLARSS
RTWTTLDFAATPLRALACSATEARDQGSHDFVSHSEDLLLPQLSLYIKSA
LARYEFTHEILARDQSWFKERLVETNLDGIRIVSFSHSWCTCIYIYIYNE
NLFRFGDQLM*
BS12913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-PA | 160 | CG14798-PA | 1..160 | 1..160 | 858 | 100 | Plus |