Clone BS12913 Report

Search the DGRC for BS12913

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG14798-RA
Protein status:BS12913.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12913.5prime Sequence

513 bp (513 high quality bases) assembled on 2006-10-13

> BS12913.5prime
GAAGTTATCAGTCGACATGACGTGGGCAGATACCGCGAAGTTGAACGCCG
AAAGTGGACTCCCCAAAACCAGGCCACGCTGGATCACGTCTCGTGAGTTT
CCTTCGGTGAGCAGGTCATGCCCTTCGTGCACATCCTGGACTTGGCTGAC
TCTGGCGCGATCAAGCCGCACGTGGACAACACTCGATTTTGCGGCAACAC
CACTGCGGGCATTAGCATGCTCAGCGACTGAAGCGCGTGACCAAGGATCC
CATGACTTTGTCAGCCACTCTGAGGATCTGCTCCTGCCGCAACTCTCGCT
CTATATTAAGAGTGCCCTAGCGCGATACGAGTTCACCCACGAAATCCTGG
CCAGAGATCAGTCGTGGTTCAAGGAGCGCTTGGTCGAAACGAACCTTGAT
GGCATACGCATAGTTTCCTTTTCTCACAGCTGGTGTACATGTATATATAT
ATATATATACAATGAAAATTTATTCCGGTTTGGTGATCAGCTAATGTAAA
AGCTTTCTAGACC

BS12913.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-PA 483 CG14798-RA 1..483 17..499 2415 100 Plus
CG14798-PB 714 CG14798-RB 244..714 29..499 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-RA 898 CG14798-RA 270..752 17..499 2415 100 Plus
a6-RC 2047 CG3771-RC 1965..2047 499..417 415 100 Minus
a6-RB 2218 CG3771-RB 2136..2218 499..417 415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1693385..1693697 187..499 1565 100 Plus
X 23542271 X 1693162..1693323 25..186 810 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:37:29 has no hits.

BS12913.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:52 Download gff for BS12913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-PA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:16 Download gff for BS12913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 267..752 11..499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:39 Download gff for BS12913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 267..752 11..499 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:39 Download gff for BS12913.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1693158..1693323 21..186 98 -> Plus
X 1693385..1693697 187..499 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:16 Download gff for BS12913.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1587191..1587356 21..186 98 -> Plus
arm_X 1587418..1587730 187..499 100   Plus

BS12913.3prime Sequence

513 bp (513 high quality bases) assembled on 2006-10-13

> BS12913.3prime
ATGGTCTAGAAAGCTTTTACATTAGCTGATCACCAAACCGGAATAAATTT
TCATTGTATATATATATATATATACATGTACACCAGCTGTGAGAAAAGGA
AACTATGCGTATGCCATCAAGGTTCGTTTCGACCAAGCGCTCCTTGAACC
ACGACTGATCTCTGGCCAGGATTTCGTGGGTGAACTCGTATCGCGCTAGG
GCACTCTTAATATAGAGCGAGAGTTGCGGCAGGAGCAGATCCTCAGAGTG
GCTGACAAAGTCATGGGATCCTTGGTCACGCGCTTCAGTCGCTGAGCATG
CTAATGCCCGCAGTGGTGTTGCCGCAAAATCGAGTGTTGTCCACGTGCGG
CTTGATCGCGCCAGAGTCAGCCAAGTCCAGGATGTGCACGAAGGGCATGA
CCTGCTCACCGAAGGAAACTCACGAGACGTGATCCAGCGTGGCCTGGTTT
TGGGGAGTCCACTTTCGGCGTTCAACTTCGCGGTATCTGCCCACGTCATG
TCGACTGATAACT

BS12913.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-PA 483 CG14798-RA 1..483 499..17 2415 100 Minus
CG14798-PB 714 CG14798-RB 244..714 487..17 2355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-RA 898 CG14798-RA 270..752 499..17 2415 100 Minus
a6-RC 2047 CG3771-RC 1965..2047 17..99 415 100 Plus
a6-RB 2218 CG3771-RB 2136..2218 17..99 415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1693385..1693697 329..17 1565 100 Minus
X 23542271 X 1693162..1693323 491..330 810 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:20:56 has no hits.

BS12913.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:52 Download gff for BS12913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-PA 1..483 17..499 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:14 Download gff for BS12913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 267..752 17..505 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:13 Download gff for BS12913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 267..752 17..505 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:13 Download gff for BS12913.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1693158..1693323 330..495 98 -> Minus
X 1693385..1693697 17..329 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:14 Download gff for BS12913.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1587191..1587356 330..495 98 -> Minus
arm_X 1587418..1587730 17..329 100   Minus

BS12913.complete Sequence

515 bp assembled on 2006-11-01

GenBank Submission: FJ637333

> BS12913.complete
GAAGTTATCAGTCGACATGACGTGGGCAGATACCGCGAAGTTGAACGCCG
AAAGTGGACTCCCCAAAACCAGGCCACGCTGGATCACGTCTCGTGAGTTT
CCTTCGGTGAGCAGGTCATGCCCTTCGTGCACATCCTGGACTTGGCTGAC
TCTGGCGCGATCAAGCCGCACGTGGACAACACTCGATTTTGCGGCAACAC
CACTGCGGGCATTAGCATGCTCAGCGACTGAAGCGCGTGACCAAGGATCC
CATGACTTTGTCAGCCACTCTGAGGATCTGCTCCTGCCGCAACTCTCGCT
CTATATTAAGAGTGCCCTAGCGCGATACGAGTTCACCCACGAAATCCTGG
CCAGAGATCAGTCGTGGTTCAAGGAGCGCTTGGTCGAAACGAACCTTGAT
GGCATACGCATAGTTTCCTTTTCTCACAGCTGGTGTACATGTATATATAT
ATATATATACAATGAAAATTTATTCCGGTTTGGTGATCAGCTAATGTAAA
AGCTTTCTAGACCAT

BS12913.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-RA 483 CG14798-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-RA 898 CG14798-RA 270..752 17..499 2415 100 Plus
a6-RC 2047 CG3771-RC 1965..2047 499..417 415 100 Minus
a6-RB 2218 CG3771-RB 2136..2218 499..417 415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1693385..1693697 187..499 1565 100 Plus
X 23542271 X 1693162..1693323 25..186 810 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:30:49 has no hits.

BS12913.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:28 Download gff for BS12913.complete
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:37 Download gff for BS12913.complete
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 255..740 11..499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:16 Download gff for BS12913.complete
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 270..750 17..497 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:28 Download gff for BS12913.complete
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 255..740 11..499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:40 Download gff for BS12913.complete
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 270..750 17..497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:40 Download gff for BS12913.complete
Subject Subject Range Query Range Percent Splice Strand
X 1693158..1693323 21..186 98 -> Plus
X 1693385..1693695 187..497 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:16 Download gff for BS12913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1587191..1587356 21..186 98 -> Plus
arm_X 1587418..1587728 187..497 100   Plus

BS12913.pep Sequence

Translation from 16 to 498

> BS12913.pep
MTWADTAKLNAESGLPKTRPRWITSREFPSVSRSCPSCTSWTWLTLARSS
RTWTTLDFAATPLRALACSATEARDQGSHDFVSHSEDLLLPQLSLYIKSA
LARYEFTHEILARDQSWFKERLVETNLDGIRIVSFSHSWCTCIYIYIYNE
NLFRFGDQLM*

BS12913.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-PA 160 CG14798-PA 1..160 1..160 858 100 Plus