Clone BS12914 Report

Search the DGRC for BS12914

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG6767-RA
Protein status:BS12914.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12914.3prime Sequence

734 bp (536 high quality bases) assembled on 2006-10-13

> BS12914.3prime
ATGGTCTAGAAAGCTTTTAGTATGGAACATTTGAGAAGAGATACGAGACA
CTCTCGCCGTTGTGTGTCCTTCTGACGGCCTCGGCGAACATCATCGAGAC
ATCAATGCACTGGATTTTGGGACAGTCCCGCATGTGTCCATCCTGCGGTA
TGGTATTGGTCACCACTACCGCCTCGAAACAGGCATTATTGATCCGCGAG
ATCGCCGGACCCGAGAAAATGCCATGCGTCAGAATAGCATACACCTTGGT
GGCTCCCGCCTCCACCAGGCGATCGGCGGCATGCACAATGGTGCCGCATG
TGTCGGCCATGTCATCGACCAGAATGGCAATCTTGTCCTTGACATCACCC
ACCAGTACCATAGAGGCCACTTCGTTGGCCTTCTTGCGCTCCTTGTGTAT
CAGAGCGAACTCCACGTTCAGTCGATCGGCAATTGAGGTGACACGCTTGG
CACCGCCAGCATCGGGCGACACAATGATCGAGTTCTTCCACTCGGGAATG
TTCTCCTTGATCCACTTGAGTACCGCCGGCTCGGCATAGAGATTATCAAC
TGGTATATCAAAGAAGCCCTGAATCTGTGAGGCGTGCAGATCCATGGTGA
TGATGTGATCCGCTCCAGCAACGGACAGCATGTTGGCCACCAATTTGGGC
GAGAGGGGCGCACGACTCTTGTCTTTTTTACTTTGGCGGGCATATGGAAA
GCAAGGGAATCCCAGCTGTAACACAAAAGGCTGA

BS12914.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-PA 1053 CG6767-RA 364..1053 706..17 3350 99.4 Minus
CG6767-PB 1167 CG6767-RB 516..1167 668..17 3210 99.6 Minus
CG6767-PB 1167 CG6767-RB 409..447 706..668 145 94.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-RH 1847 CG6767-RH 344..1061 734..16 3465 98.9 Minus
CG6767-RA 2010 CG6767-RA 507..1224 734..16 3465 98.9 Minus
CG6767-RF 2106 CG6767-RF 591..1320 734..16 3335 97.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9684522..9684856 110..444 1675 100 Plus
3L 28110227 3L 9684921..9685048 444..571 640 100 Plus
3L 28110227 3L 9684365..9684461 16..112 485 100 Plus
3L 28110227 3L 9686364..9686465 568..669 480 98 Plus
3L 28110227 3L 9689265..9689330 668..734 210 91 Plus
Blast to na_te.dros performed on 2015-01-31 10:19:38 has no hits.

BS12914.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:53 Download gff for BS12914.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-PA 338..1053 17..733 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:50 Download gff for BS12914.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 508..1224 16..733 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:53 Download gff for BS12914.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 508..1224 16..733 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:53 Download gff for BS12914.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9684365..9684458 16..109 100 <- Plus
3L 9684522..9684855 110..443 100 <- Plus
3L 9684921..9685045 444..568 100 <- Plus
3L 9686365..9686463 569..667 97 <- Plus
3L 9689265..9689329 668..733 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:50 Download gff for BS12914.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9677465..9677558 16..109 100 <- Plus
arm_3L 9677622..9677955 110..443 100 <- Plus
arm_3L 9678021..9678145 444..568 100 <- Plus
arm_3L 9679465..9679563 569..667 97 <- Plus
arm_3L 9682365..9682429 668..733 91   Plus

BS12914.5prime Sequence

768 bp (715 high quality bases) assembled on 2006-10-13

> BS12914.5prime
GAAGTTATCAGTCGACATGCCAGTTCGCTCTGCTAATCCGATACGCGCTA
GAAGTTTGATCCGAGACAATTTGGAGAAACAGGCTGGTTGTCTAAATTTA
ATCCACTCCAGAATGCCGAACATCAAAGTGTTTTCGGGCACCTCGCATCC
GGATTTGGCCCAGCGGATAGTCGATCGCCTGGGAATCGATCTCGGCAAGG
TGGTTACGAAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTGGGGAA
TCGGTGCGCGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGAT
CAACGATAACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTG
CCTCAGCCTCTCGTGTTACAGCTGTGATTCCTTGCTTTCCATATGCCCGC
CAAGATAAAAAAGACAAGAGTCGTGCGCCCATCTCGGCCAAATTGGTGGC
CAACATGCTGTCCGTTGCTGGAGCGGATCACATCATCACCATGGATCTGC
ACGCCTCACAGATTCAGGGCTTCTTTGATATACCAGTTGATAATCTCTAT
GCCGAGCCGGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAA
GAACTCGATCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCT
CAATTGCCGATCGACTGAACGTGGAGTTCGCTCTGATACACAAGGAGCGC
AAGAAGGCCAACGAAGTGGCCTCTATGGTACTGGTGGGTGATGTCAAGGA
CAAGATTGCCATTCTGGT

BS12914.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-PA 1053 CG6767-RA 1..752 17..768 3760 100 Plus
CG6767-PB 1167 CG6767-RB 46..447 17..418 2010 100 Plus
CG6767-PB 1167 CG6767-RB 516..866 418..768 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-RH 1847 CG6767-RH 8..759 17..768 3760 100 Plus
CG6767-RA 2010 CG6767-RA 171..922 17..768 3760 100 Plus
CG6767-RF 2106 CG6767-RF 255..1018 17..768 3630 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9694233..9694450 234..17 1090 100 Minus
3L 28110227 3L 9689265..9689449 418..234 925 100 Minus
3L 28110227 3L 9684921..9685048 642..515 640 100 Minus
3L 28110227 3L 9684730..9684856 768..642 635 100 Minus
3L 28110227 3L 9686364..9686465 518..417 510 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:03:11 has no hits.

BS12914.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:53 Download gff for BS12914.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-PA 1..752 17..768 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:25 Download gff for BS12914.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 166..922 11..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:53 Download gff for BS12914.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 166..922 11..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:53 Download gff for BS12914.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9689265..9689448 235..418 100 <- Minus
3L 9686365..9686463 419..517 100 <- Minus
3L 9684921..9685045 518..642 100 <- Minus
3L 9684730..9684855 643..768 100 <- Minus
3L 9694233..9694453 11..234 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:25 Download gff for BS12914.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9687333..9687553 11..234 98   Minus
arm_3L 9677830..9677955 643..768 100 <- Minus
arm_3L 9678021..9678145 518..642 100 <- Minus
arm_3L 9679465..9679563 419..517 100 <- Minus
arm_3L 9682365..9682548 235..418 100 <- Minus

BS12914.complete Sequence

1085 bp assembled on 2006-11-01

GenBank Submission: FJ637334

> BS12914.complete
GAAGTTATCAGTCGACATGCCAGTTCGCTCTGCTAATCCGATACGCGCTA
GAAGTTTGATCCGAGACAATTTGGAGAAACAGGCTGGTTGTCTAAATTTA
ATCCACTCCAGAATGCCGAACATCAAAGTGTTTTCGGGCACCTCGCATCC
GGATTTGGCCCAGCGGATAGTCGATCGCCTGGGAATCGATCTCGGCAAGG
TGGTTACGAAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTGGGGAA
TCGGTGCGCGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGAT
CAACGATAACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTG
CCTCAGCCTCTCGTGTTACAGCTGTGATTCCTTGCTTTCCATATGCCCGC
CAAGATAAAAAAGACAAGAGTCGTGCGCCCATCTCGGCCAAATTGGTGGC
CAACATGCTGTCCGTTGCTGGAGCGGATCACATCATCACCATGGATCTGC
ACGCCTCACAGATTCAGGGCTTCTTTGATATACCAGTTGATAATCTCTAT
GCCGAGCCGGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAA
GAACTCGATCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCT
CAATTGCCGATCGACTGAACGTGGAGTTCGCTCTGATACACAAGGAGCGC
AAGAAGGCCAACGAAGTGGCCTCTATGGTACTGGTGGGTGATGTCAAGGA
CAAGATTGCCATTCTGGTCGATGACATGGCCGACACATGCGGCACCATTG
TGCATGCCGCCGATCGCCTGGTGGAGGCGGGAGCCACCAAGGTGTATGCT
ATTCTGACGCATGGCATTTTCTCGGGTCCGGCGATCTCGCGGATCAATAA
TGCCTGTTTCGAGGCGGTAGTGGTGACCAATACCATACCGCAGGATGGAC
ACATGCGGGACTGTCCCAAAATCCAGTGCATTGATGTCTCGATGATGTTC
GCCGAGGCCGTCAGAAGGACACACAACGGCGAGAGTGTCTCGTATCTCTT
CTCAAATGTTCCATACTAAAAGCTTTCTAGACCAT

BS12914.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-RH 1053 CG6767-PH 1..1053 17..1069 5265 100 Plus
CG6767-RA 1053 CG6767-PA 1..1053 17..1069 5265 100 Plus
CG6767-RF 1110 CG6767-PF 46..1110 17..1069 5110 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-RH 1847 CG6767-RH 8..1061 17..1070 5270 100 Plus
CG6767-RA 2010 CG6767-RA 171..1224 17..1070 5270 100 Plus
CG6767-RF 2106 CG6767-RF 255..1320 17..1070 5115 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9684522..9684856 976..642 1675 100 Minus
3L 28110227 3L 9694233..9694450 234..17 1090 100 Minus
3L 28110227 3L 9689265..9689449 418..234 925 100 Minus
3L 28110227 3L 9684921..9685048 642..515 640 100 Minus
3L 28110227 3L 9686364..9686465 518..417 510 100 Minus
3L 28110227 3L 9684365..9684461 1070..974 485 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:20:56 has no hits.

BS12914.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:30 Download gff for BS12914.complete
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 1..1053 17..1069 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:16 Download gff for BS12914.complete
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 164..1214 17..1067 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:39 Download gff for BS12914.complete
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 171..1221 17..1067 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:30 Download gff for BS12914.complete
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 159..1217 11..1070 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:01 Download gff for BS12914.complete
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 171..1221 17..1067 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:01 Download gff for BS12914.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9684368..9684458 977..1067 100 <- Minus
3L 9684522..9684855 643..976 100 <- Minus
3L 9684921..9685045 518..642 100 <- Minus
3L 9686365..9686463 419..517 100 <- Minus
3L 9689265..9689448 235..418 100 <- Minus
3L 9694233..9694450 17..234 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:39 Download gff for BS12914.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9677468..9677558 977..1067 100 <- Minus
arm_3L 9677622..9677955 643..976 100 <- Minus
arm_3L 9678021..9678145 518..642 100 <- Minus
arm_3L 9679465..9679563 419..517 100 <- Minus
arm_3L 9682365..9682548 235..418 100 <- Minus
arm_3L 9687333..9687550 17..234 100   Minus

BS12914.pep Sequence

Translation from 16 to 1068

> BS12914.pep
MPVRSANPIRARSLIRDNLEKQAGCLNLIHSRMPNIKVFSGTSHPDLAQR
IVDRLGIDLGKVVTKKFSNLETCVEIGESVRGEDVYIVQSGSGEINDNLM
ELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSV
AGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIV
SPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDKIAIL
VDDMADTCGTIVHAADRLVEAGATKVYAILTHGIFSGPAISRINNACFEA
VVVTNTIPQDGHMRDCPKIQCIDVSMMFAEAVRRTHNGESVSYLFSNVPY
*

BS12914.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-PH 350 CG6767-PH 1..350 1..350 1784 100 Plus
CG6767-PA 350 CG6767-PA 1..350 1..350 1784 100 Plus
CG6767-PC 354 CG6767-PC 1..354 1..350 1769 98.9 Plus
CG6767-PJ 354 CG6767-PJ 1..354 1..350 1769 98.9 Plus
CG6767-PF 369 CG6767-PF 16..369 1..350 1769 98.9 Plus