Clone Sequence Records
BS12914.3prime Sequence
734 bp (536 high quality bases) assembled on 2006-10-13
> BS12914.3prime
ATGGTCTAGAAAGCTTTTAGTATGGAACATTTGAGAAGAGATACGAGACA
CTCTCGCCGTTGTGTGTCCTTCTGACGGCCTCGGCGAACATCATCGAGAC
ATCAATGCACTGGATTTTGGGACAGTCCCGCATGTGTCCATCCTGCGGTA
TGGTATTGGTCACCACTACCGCCTCGAAACAGGCATTATTGATCCGCGAG
ATCGCCGGACCCGAGAAAATGCCATGCGTCAGAATAGCATACACCTTGGT
GGCTCCCGCCTCCACCAGGCGATCGGCGGCATGCACAATGGTGCCGCATG
TGTCGGCCATGTCATCGACCAGAATGGCAATCTTGTCCTTGACATCACCC
ACCAGTACCATAGAGGCCACTTCGTTGGCCTTCTTGCGCTCCTTGTGTAT
CAGAGCGAACTCCACGTTCAGTCGATCGGCAATTGAGGTGACACGCTTGG
CACCGCCAGCATCGGGCGACACAATGATCGAGTTCTTCCACTCGGGAATG
TTCTCCTTGATCCACTTGAGTACCGCCGGCTCGGCATAGAGATTATCAAC
TGGTATATCAAAGAAGCCCTGAATCTGTGAGGCGTGCAGATCCATGGTGA
TGATGTGATCCGCTCCAGCAACGGACAGCATGTTGGCCACCAATTTGGGC
GAGAGGGGCGCACGACTCTTGTCTTTTTTACTTTGGCGGGCATATGGAAA
GCAAGGGAATCCCAGCTGTAACACAAAAGGCTGA
BS12914.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-PA | 1053 | CG6767-RA | 364..1053 | 706..17 | 3350 | 99.4 | Minus |
CG6767-PB | 1167 | CG6767-RB | 516..1167 | 668..17 | 3210 | 99.6 | Minus |
CG6767-PB | 1167 | CG6767-RB | 409..447 | 706..668 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-RH | 1847 | CG6767-RH | 344..1061 | 734..16 | 3465 | 98.9 | Minus |
CG6767-RA | 2010 | CG6767-RA | 507..1224 | 734..16 | 3465 | 98.9 | Minus |
CG6767-RF | 2106 | CG6767-RF | 591..1320 | 734..16 | 3335 | 97.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9684522..9684856 | 110..444 | 1675 | 100 | Plus |
3L | 28110227 | 3L | 9684921..9685048 | 444..571 | 640 | 100 | Plus |
3L | 28110227 | 3L | 9684365..9684461 | 16..112 | 485 | 100 | Plus |
3L | 28110227 | 3L | 9686364..9686465 | 568..669 | 480 | 98 | Plus |
3L | 28110227 | 3L | 9689265..9689330 | 668..734 | 210 | 91 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:19:38 has no hits.
BS12914.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:53 Download gff for
BS12914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-PA | 338..1053 | 17..733 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:50 Download gff for
BS12914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 508..1224 | 16..733 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:53 Download gff for
BS12914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 508..1224 | 16..733 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:53 Download gff for
BS12914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9684365..9684458 | 16..109 | 100 | <- | Plus |
3L | 9684522..9684855 | 110..443 | 100 | <- | Plus |
3L | 9684921..9685045 | 444..568 | 100 | <- | Plus |
3L | 9686365..9686463 | 569..667 | 97 | <- | Plus |
3L | 9689265..9689329 | 668..733 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:50 Download gff for
BS12914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9677465..9677558 | 16..109 | 100 | <- | Plus |
arm_3L | 9677622..9677955 | 110..443 | 100 | <- | Plus |
arm_3L | 9678021..9678145 | 444..568 | 100 | <- | Plus |
arm_3L | 9679465..9679563 | 569..667 | 97 | <- | Plus |
arm_3L | 9682365..9682429 | 668..733 | 91 | | Plus |
BS12914.5prime Sequence
768 bp (715 high quality bases) assembled on 2006-10-13
> BS12914.5prime
GAAGTTATCAGTCGACATGCCAGTTCGCTCTGCTAATCCGATACGCGCTA
GAAGTTTGATCCGAGACAATTTGGAGAAACAGGCTGGTTGTCTAAATTTA
ATCCACTCCAGAATGCCGAACATCAAAGTGTTTTCGGGCACCTCGCATCC
GGATTTGGCCCAGCGGATAGTCGATCGCCTGGGAATCGATCTCGGCAAGG
TGGTTACGAAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTGGGGAA
TCGGTGCGCGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGAT
CAACGATAACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTG
CCTCAGCCTCTCGTGTTACAGCTGTGATTCCTTGCTTTCCATATGCCCGC
CAAGATAAAAAAGACAAGAGTCGTGCGCCCATCTCGGCCAAATTGGTGGC
CAACATGCTGTCCGTTGCTGGAGCGGATCACATCATCACCATGGATCTGC
ACGCCTCACAGATTCAGGGCTTCTTTGATATACCAGTTGATAATCTCTAT
GCCGAGCCGGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAA
GAACTCGATCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCT
CAATTGCCGATCGACTGAACGTGGAGTTCGCTCTGATACACAAGGAGCGC
AAGAAGGCCAACGAAGTGGCCTCTATGGTACTGGTGGGTGATGTCAAGGA
CAAGATTGCCATTCTGGT
BS12914.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-PA | 1053 | CG6767-RA | 1..752 | 17..768 | 3760 | 100 | Plus |
CG6767-PB | 1167 | CG6767-RB | 46..447 | 17..418 | 2010 | 100 | Plus |
CG6767-PB | 1167 | CG6767-RB | 516..866 | 418..768 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-RH | 1847 | CG6767-RH | 8..759 | 17..768 | 3760 | 100 | Plus |
CG6767-RA | 2010 | CG6767-RA | 171..922 | 17..768 | 3760 | 100 | Plus |
CG6767-RF | 2106 | CG6767-RF | 255..1018 | 17..768 | 3630 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9694233..9694450 | 234..17 | 1090 | 100 | Minus |
3L | 28110227 | 3L | 9689265..9689449 | 418..234 | 925 | 100 | Minus |
3L | 28110227 | 3L | 9684921..9685048 | 642..515 | 640 | 100 | Minus |
3L | 28110227 | 3L | 9684730..9684856 | 768..642 | 635 | 100 | Minus |
3L | 28110227 | 3L | 9686364..9686465 | 518..417 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:03:11 has no hits.
BS12914.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:53 Download gff for
BS12914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-PA | 1..752 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:25 Download gff for
BS12914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 166..922 | 11..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:53 Download gff for
BS12914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 166..922 | 11..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:53 Download gff for
BS12914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9689265..9689448 | 235..418 | 100 | <- | Minus |
3L | 9686365..9686463 | 419..517 | 100 | <- | Minus |
3L | 9684921..9685045 | 518..642 | 100 | <- | Minus |
3L | 9684730..9684855 | 643..768 | 100 | <- | Minus |
3L | 9694233..9694453 | 11..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:25 Download gff for
BS12914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9687333..9687553 | 11..234 | 98 | | Minus |
arm_3L | 9677830..9677955 | 643..768 | 100 | <- | Minus |
arm_3L | 9678021..9678145 | 518..642 | 100 | <- | Minus |
arm_3L | 9679465..9679563 | 419..517 | 100 | <- | Minus |
arm_3L | 9682365..9682548 | 235..418 | 100 | <- | Minus |
BS12914.complete Sequence
1085 bp assembled on 2006-11-01
GenBank Submission: FJ637334
> BS12914.complete
GAAGTTATCAGTCGACATGCCAGTTCGCTCTGCTAATCCGATACGCGCTA
GAAGTTTGATCCGAGACAATTTGGAGAAACAGGCTGGTTGTCTAAATTTA
ATCCACTCCAGAATGCCGAACATCAAAGTGTTTTCGGGCACCTCGCATCC
GGATTTGGCCCAGCGGATAGTCGATCGCCTGGGAATCGATCTCGGCAAGG
TGGTTACGAAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTGGGGAA
TCGGTGCGCGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGAT
CAACGATAACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTG
CCTCAGCCTCTCGTGTTACAGCTGTGATTCCTTGCTTTCCATATGCCCGC
CAAGATAAAAAAGACAAGAGTCGTGCGCCCATCTCGGCCAAATTGGTGGC
CAACATGCTGTCCGTTGCTGGAGCGGATCACATCATCACCATGGATCTGC
ACGCCTCACAGATTCAGGGCTTCTTTGATATACCAGTTGATAATCTCTAT
GCCGAGCCGGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAA
GAACTCGATCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCT
CAATTGCCGATCGACTGAACGTGGAGTTCGCTCTGATACACAAGGAGCGC
AAGAAGGCCAACGAAGTGGCCTCTATGGTACTGGTGGGTGATGTCAAGGA
CAAGATTGCCATTCTGGTCGATGACATGGCCGACACATGCGGCACCATTG
TGCATGCCGCCGATCGCCTGGTGGAGGCGGGAGCCACCAAGGTGTATGCT
ATTCTGACGCATGGCATTTTCTCGGGTCCGGCGATCTCGCGGATCAATAA
TGCCTGTTTCGAGGCGGTAGTGGTGACCAATACCATACCGCAGGATGGAC
ACATGCGGGACTGTCCCAAAATCCAGTGCATTGATGTCTCGATGATGTTC
GCCGAGGCCGTCAGAAGGACACACAACGGCGAGAGTGTCTCGTATCTCTT
CTCAAATGTTCCATACTAAAAGCTTTCTAGACCAT
BS12914.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-RH | 1053 | CG6767-PH | 1..1053 | 17..1069 | 5265 | 100 | Plus |
CG6767-RA | 1053 | CG6767-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
CG6767-RF | 1110 | CG6767-PF | 46..1110 | 17..1069 | 5110 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-RH | 1847 | CG6767-RH | 8..1061 | 17..1070 | 5270 | 100 | Plus |
CG6767-RA | 2010 | CG6767-RA | 171..1224 | 17..1070 | 5270 | 100 | Plus |
CG6767-RF | 2106 | CG6767-RF | 255..1320 | 17..1070 | 5115 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9684522..9684856 | 976..642 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 9694233..9694450 | 234..17 | 1090 | 100 | Minus |
3L | 28110227 | 3L | 9689265..9689449 | 418..234 | 925 | 100 | Minus |
3L | 28110227 | 3L | 9684921..9685048 | 642..515 | 640 | 100 | Minus |
3L | 28110227 | 3L | 9686364..9686465 | 518..417 | 510 | 100 | Minus |
3L | 28110227 | 3L | 9684365..9684461 | 1070..974 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:20:56 has no hits.
BS12914.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:30 Download gff for
BS12914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 1..1053 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:16 Download gff for
BS12914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 164..1214 | 17..1067 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:39 Download gff for
BS12914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 171..1221 | 17..1067 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:30 Download gff for
BS12914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 159..1217 | 11..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:01 Download gff for
BS12914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 171..1221 | 17..1067 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:01 Download gff for
BS12914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9684368..9684458 | 977..1067 | 100 | <- | Minus |
3L | 9684522..9684855 | 643..976 | 100 | <- | Minus |
3L | 9684921..9685045 | 518..642 | 100 | <- | Minus |
3L | 9686365..9686463 | 419..517 | 100 | <- | Minus |
3L | 9689265..9689448 | 235..418 | 100 | <- | Minus |
3L | 9694233..9694450 | 17..234 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:39 Download gff for
BS12914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9677468..9677558 | 977..1067 | 100 | <- | Minus |
arm_3L | 9677622..9677955 | 643..976 | 100 | <- | Minus |
arm_3L | 9678021..9678145 | 518..642 | 100 | <- | Minus |
arm_3L | 9679465..9679563 | 419..517 | 100 | <- | Minus |
arm_3L | 9682365..9682548 | 235..418 | 100 | <- | Minus |
arm_3L | 9687333..9687550 | 17..234 | 100 | | Minus |
BS12914.pep Sequence
Translation from 16 to 1068
> BS12914.pep
MPVRSANPIRARSLIRDNLEKQAGCLNLIHSRMPNIKVFSGTSHPDLAQR
IVDRLGIDLGKVVTKKFSNLETCVEIGESVRGEDVYIVQSGSGEINDNLM
ELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSV
AGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIV
SPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDKIAIL
VDDMADTCGTIVHAADRLVEAGATKVYAILTHGIFSGPAISRINNACFEA
VVVTNTIPQDGHMRDCPKIQCIDVSMMFAEAVRRTHNGESVSYLFSNVPY
*
BS12914.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-PH | 350 | CG6767-PH | 1..350 | 1..350 | 1784 | 100 | Plus |
CG6767-PA | 350 | CG6767-PA | 1..350 | 1..350 | 1784 | 100 | Plus |
CG6767-PC | 354 | CG6767-PC | 1..354 | 1..350 | 1769 | 98.9 | Plus |
CG6767-PJ | 354 | CG6767-PJ | 1..354 | 1..350 | 1769 | 98.9 | Plus |
CG6767-PF | 369 | CG6767-PF | 16..369 | 1..350 | 1769 | 98.9 | Plus |